Wall clock time and date at job start Wed Apr 1 2020 00:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 O 1.42893 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00260 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47246 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00197 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99970 * 180.02562 * 6 5 4 9 9 C 1.47020 * 125.64685 * 0.02562 * 8 6 5 10 10 C 1.54328 * 107.27058 * 178.89805 * 9 8 6 11 11 C 1.55151 * 102.94142 * 337.81064 * 10 9 8 12 12 H 1.09008 * 111.00550 * 277.38887 * 11 10 9 13 13 C 1.52998 * 111.00503 * 153.57633 * 11 10 9 14 14 H 1.08994 * 109.47258 * 298.38401 * 13 11 10 15 15 C 1.53001 * 109.47146 * 178.38915 * 13 11 10 16 16 N 1.46897 * 109.47235 * 58.38606 * 13 11 10 17 17 C 1.46896 * 111.00125 * 204.99627 * 16 13 11 18 18 C 1.50700 * 109.47256 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99895 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00108 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99914 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00270 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00225 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00334 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99675 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47710 * 270.00413 * 25 23 21 27 27 H 1.48499 * 109.46864 * 150.00147 * 25 23 21 28 28 H 1.48500 * 109.46867 * 30.00536 * 25 23 21 29 29 C 1.47425 * 125.64686 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47411 * 300.00169 * 1 2 3 32 32 H 1.09000 * 109.47065 * 60.00394 * 1 2 3 33 33 H 1.08995 * 109.47343 * 239.99485 * 2 1 3 34 34 H 1.09007 * 109.46722 * 119.99448 * 2 1 3 35 35 H 1.08995 * 109.47423 * 59.99533 * 3 2 1 36 36 H 1.09007 * 109.46862 * 299.99362 * 3 2 1 37 37 H 1.09009 * 109.46716 * 59.99864 * 5 4 3 38 38 H 1.08996 * 109.47280 * 300.00008 * 5 4 3 39 39 H 1.09001 * 109.88123 * 59.48184 * 9 8 6 40 40 H 1.09002 * 110.01506 * 298.38909 * 9 8 6 41 41 H 1.09000 * 110.71974 * 219.44847 * 10 9 8 42 42 H 1.08997 * 110.71758 * 96.17451 * 10 9 8 43 43 H 1.09003 * 109.47405 * 184.72518 * 15 13 11 44 44 H 1.09004 * 109.47030 * 304.72259 * 15 13 11 45 45 H 1.08994 * 109.47559 * 64.72124 * 15 13 11 46 46 H 1.00900 * 110.99644 * 81.04844 * 16 13 11 47 47 H 1.09011 * 109.46714 * 60.00460 * 17 16 13 48 48 H 1.08998 * 109.47568 * 300.00379 * 17 16 13 49 49 H 0.96993 * 119.99793 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99804 * 179.97438 * 24 23 21 51 51 H 1.09007 * 110.36603 * 85.33628 * 29 8 6 52 52 H 1.08992 * 110.36725 * 323.01264 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0012 7 8 6.0741 1.5341 -0.0012 8 7 6.3164 3.7393 -0.0012 9 6 5.8178 5.1224 -0.0007 10 6 7.0486 6.0531 0.0274 11 6 8.1599 5.1420 0.6121 12 1 8.1078 5.1116 1.7005 13 6 9.5441 5.5965 0.1448 14 1 9.6024 5.5254 -0.9412 15 6 10.6139 4.7008 0.7726 16 7 9.7674 6.9887 0.5570 17 6 10.7441 7.6474 -0.3204 18 6 10.9464 9.0705 0.1320 19 8 10.3371 9.4943 1.0914 20 7 11.8042 9.8725 -0.5294 21 6 11.9886 11.1671 -0.1175 22 1 11.4467 11.5442 0.7373 23 6 12.8725 11.9941 -0.7997 24 7 13.0496 13.2348 -0.4045 25 14 13.8103 11.3417 -2.2776 26 1 15.0972 10.7534 -1.8272 27 1 14.0788 12.4542 -3.2239 28 1 13.0002 10.2988 -2.9569 29 6 7.7904 3.7681 -0.0007 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.7289 3.2892 0.8888 38 1 3.7282 3.2886 -0.8912 39 1 5.2028 5.2944 0.8825 40 1 5.2329 5.3084 -0.9015 41 1 6.8698 6.9093 0.6779 42 1 7.3079 6.3800 -0.9796 43 1 11.6027 5.0753 0.5075 44 1 10.5020 4.7065 1.8569 45 1 10.4994 3.6827 0.4009 46 1 10.0576 7.0378 1.5222 47 1 10.3734 7.6416 -1.3456 48 1 11.6928 7.1127 -0.2741 49 1 12.2911 9.5337 -1.2969 50 1 13.6670 13.8119 -0.8806 51 1 8.1717 3.6921 -1.0190 52 1 8.1854 2.9597 0.6145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278983354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:43 Heat of formation + Delta-G solvation = -118.760904 kcal Electronic energy + Delta-G solvation = -29229.317752 eV Core-core repulsion = 25035.779723 eV Total energy + Delta-G solvation = -4193.538029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45731 -38.93867 -38.38660 -37.65048 -36.02353 -34.11919 -33.98658 -32.24234 -31.65755 -30.44262 -29.34452 -27.83177 -26.61574 -26.02538 -24.27048 -23.30650 -22.06481 -22.00190 -20.46739 -19.64341 -19.36986 -18.35435 -17.66158 -17.13187 -16.84984 -16.40936 -15.78752 -15.76417 -15.45985 -15.11043 -14.86814 -14.73101 -14.29811 -14.05985 -13.85123 -13.83184 -13.42809 -13.23270 -13.06192 -12.86733 -12.82090 -12.53267 -12.52224 -12.41708 -12.34503 -12.32397 -12.06711 -11.73177 -11.39737 -11.36529 -11.33348 -11.20015 -11.05466 -10.96314 -10.74064 -10.61700 -10.13384 -10.04458 -9.99646 -9.59440 -8.94099 -8.62028 -8.21915 -8.15254 -6.33334 -3.84849 2.31590 2.33180 3.00560 3.04697 3.13369 3.42554 3.71897 3.90183 4.08091 4.18919 4.38772 4.47233 4.50123 4.56477 4.67527 4.69158 4.74148 4.84353 4.93255 4.94320 4.99036 5.01397 5.05647 5.08967 5.17851 5.19814 5.24914 5.33308 5.35066 5.53224 5.54734 5.58426 5.62818 5.65888 5.70181 5.74055 5.74631 5.85757 5.89829 5.94174 6.01134 6.09922 6.20247 6.63347 7.07127 7.18755 7.54128 7.56415 7.87859 8.12285 8.57477 8.92829 9.40295 9.80432 10.79800 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.001556 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.372669 B =17993.799209 C =18357.284249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.366 6.366 5 C 0.050 3.950 6 C 0.529 3.471 7 O -0.522 6.522 8 N -0.618 5.618 9 C 0.092 3.908 10 C -0.110 4.110 11 C -0.087 4.087 12 H 0.086 0.914 13 C 0.094 3.906 14 H 0.080 0.920 15 C -0.187 4.187 16 N -0.660 5.660 17 C 0.048 3.952 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.591 5.591 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.352 0.648 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.069 0.931 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.640 -23.011 -2.192 29.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.017 4.017 4 O -0.284 6.284 5 C -0.030 4.030 6 C 0.316 3.684 7 O -0.397 6.397 8 N -0.355 5.355 9 C -0.031 4.031 10 C -0.148 4.148 11 C -0.107 4.107 12 H 0.104 0.896 13 C -0.017 4.017 14 H 0.098 0.902 15 C -0.246 4.246 16 N -0.292 5.292 17 C -0.084 4.084 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.230 5.230 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.009 4.009 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.172 0.828 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.170 -23.095 -1.908 30.075 hybrid contribution 1.533 -0.326 -0.984 1.850 sum -17.637 -23.421 -2.892 29.462 Atomic orbital electron populations 1.21699 0.94590 1.02375 1.02040 1.21451 0.95654 0.95336 1.03690 1.22649 0.80333 0.98382 1.00337 1.87994 1.19691 1.25271 1.95452 1.22142 0.91367 0.86835 1.02615 1.19869 0.88335 0.83279 0.76875 1.90736 1.74527 1.25836 1.48635 1.48435 1.07433 1.05893 1.73696 1.22268 0.98345 0.80867 1.01634 1.22507 0.91903 0.97375 1.02978 1.22323 0.94652 0.92920 1.00757 0.89592 1.21479 0.92657 0.87770 0.99746 0.90190 1.22575 0.99690 1.00659 1.01695 1.60116 1.48710 1.13005 1.07390 1.21728 0.94483 0.94245 0.97977 1.19718 0.83461 0.86987 0.86279 1.90565 1.49416 1.75704 1.28991 1.42212 1.39482 1.12463 1.28867 1.19432 1.24039 0.84964 1.15003 0.86286 1.25033 0.97528 0.95366 0.98160 1.69619 1.36241 1.05689 1.40572 0.86678 0.80705 0.79147 0.82892 1.19670 1.20169 1.19488 1.22278 0.79210 0.98165 1.01210 0.91910 0.92480 0.92488 0.90961 0.90950 0.93074 0.93105 0.90234 0.90269 0.91284 0.91314 0.88788 0.90280 0.92338 0.92114 0.92021 0.82792 0.89566 0.93739 0.79713 0.91607 0.91251 0.90343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.79 6.30 -26.73 -0.17 -0.95 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 O -0.37 -3.88 9.88 -55.14 -0.54 -4.42 16 5 C 0.05 0.43 5.61 36.01 0.20 0.63 16 6 C 0.53 6.18 7.93 -10.98 -0.09 6.09 16 7 O -0.52 -8.39 16.75 -14.35 -0.24 -8.63 16 8 N -0.62 -6.02 3.33 -170.52 -0.57 -6.59 16 9 C 0.09 0.67 6.49 -3.06 -0.02 0.66 16 10 C -0.11 -0.97 6.05 -24.90 -0.15 -1.12 16 11 C -0.09 -0.79 2.75 -88.48 -0.24 -1.03 16 12 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 13 C 0.09 0.94 2.13 -67.71 -0.14 0.80 16 14 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 15 C -0.19 -1.71 9.00 37.16 0.33 -1.38 16 16 N -0.66 -8.89 5.49 -108.00 -0.59 -9.48 16 17 C 0.05 0.73 5.96 -4.98 -0.03 0.70 16 18 C 0.45 9.73 7.82 -10.98 -0.09 9.65 16 19 O -0.56 -14.55 15.78 5.55 0.09 -14.47 16 20 N -0.59 -13.65 5.09 -10.96 -0.06 -13.71 16 21 C -0.31 -8.49 10.16 -14.93 -0.15 -8.64 16 22 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 23 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 24 N -0.88 -25.44 13.96 55.50 0.77 -24.66 16 25 Si 0.88 19.03 27.74 -169.99 -4.71 14.32 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.27 -5.29 6.52 56.52 0.37 -4.93 16 29 C 0.11 1.09 5.78 -2.53 -0.01 1.07 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.73 8.04 -51.93 -0.42 0.32 16 43 H 0.06 0.56 7.36 -51.93 -0.38 0.18 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.50 7.76 -51.93 -0.40 0.10 16 46 H 0.35 5.09 8.18 -39.29 -0.32 4.77 16 47 H 0.09 1.17 8.06 -51.92 -0.42 0.75 16 48 H 0.04 0.60 7.37 -51.93 -0.38 0.21 16 49 H 0.37 7.50 5.76 -40.82 -0.24 7.27 16 50 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 51 H 0.07 0.65 7.96 -51.92 -0.41 0.23 16 52 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 LS Contribution 421.96 15.07 6.36 6.36 Total: -1.00 -35.09 421.96 -8.83 -43.91 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -9.26 Total: 9.51 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -0.07 Total: 7.85 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.44 Total: -54.44 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.70 Total: -27.51 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.32 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -35.09 -8.83 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.848 kcal (2) G-P(sol) polarization free energy of solvation -35.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds