Wall clock time and date at job start Wed Apr 1 2020 00:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47141 * 2 1 4 4 O 1.42893 * 109.47245 * 180.02562 * 3 2 1 5 5 C 1.42902 * 114.00260 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47246 * 179.97438 * 5 4 3 7 7 O 1.21279 * 120.00197 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99970 * 180.02562 * 6 5 4 9 9 C 1.47020 * 125.64685 * 0.02562 * 8 6 5 10 10 C 1.54328 * 107.27058 * 178.89805 * 9 8 6 11 11 C 1.55151 * 102.94142 * 337.81064 * 10 9 8 12 12 H 1.09008 * 111.00550 * 277.38887 * 11 10 9 13 13 C 1.52998 * 111.00503 * 153.57633 * 11 10 9 14 14 H 1.08994 * 109.47258 * 298.38401 * 13 11 10 15 15 C 1.53001 * 109.47146 * 178.38915 * 13 11 10 16 16 N 1.46897 * 109.47235 * 58.38606 * 13 11 10 17 17 C 1.46896 * 111.00125 * 204.99627 * 16 13 11 18 18 C 1.50700 * 109.47256 * 179.97438 * 17 16 13 19 19 O 1.21293 * 119.99895 * 0.02562 * 18 17 16 20 20 N 1.34780 * 120.00108 * 180.02562 * 18 17 16 21 21 C 1.37096 * 119.99914 * 180.02562 * 20 18 17 22 22 H 1.08007 * 120.00270 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00225 * 180.02562 * 21 20 18 24 24 N 1.31412 * 120.00334 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99675 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47710 * 270.00413 * 25 23 21 27 27 H 1.48499 * 109.46864 * 150.00147 * 25 23 21 28 28 H 1.48500 * 109.46867 * 30.00536 * 25 23 21 29 29 C 1.47425 * 125.64686 * 179.97438 * 8 6 5 30 30 H 1.09002 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47411 * 300.00169 * 1 2 3 32 32 H 1.09000 * 109.47065 * 60.00394 * 1 2 3 33 33 H 1.08995 * 109.47343 * 239.99485 * 2 1 3 34 34 H 1.09007 * 109.46722 * 119.99448 * 2 1 3 35 35 H 1.08995 * 109.47423 * 59.99533 * 3 2 1 36 36 H 1.09007 * 109.46862 * 299.99362 * 3 2 1 37 37 H 1.09009 * 109.46716 * 59.99864 * 5 4 3 38 38 H 1.08996 * 109.47280 * 300.00008 * 5 4 3 39 39 H 1.09001 * 109.88123 * 59.48184 * 9 8 6 40 40 H 1.09002 * 110.01506 * 298.38909 * 9 8 6 41 41 H 1.09000 * 110.71974 * 219.44847 * 10 9 8 42 42 H 1.08997 * 110.71758 * 96.17451 * 10 9 8 43 43 H 1.09003 * 109.47405 * 184.72518 * 15 13 11 44 44 H 1.09004 * 109.47030 * 304.72259 * 15 13 11 45 45 H 1.08994 * 109.47559 * 64.72124 * 15 13 11 46 46 H 1.00900 * 110.99644 * 81.04844 * 16 13 11 47 47 H 1.09011 * 109.46714 * 60.00460 * 17 16 13 48 48 H 1.08998 * 109.47568 * 300.00379 * 17 16 13 49 49 H 0.96993 * 119.99793 * 0.02562 * 20 18 17 50 50 H 0.96995 * 119.99804 * 179.97438 * 24 23 21 51 51 H 1.09007 * 110.36603 * 85.33628 * 29 8 6 52 52 H 1.08992 * 110.36725 * 323.01264 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5525 2.6290 -0.0012 7 8 6.0741 1.5341 -0.0012 8 7 6.3164 3.7393 -0.0012 9 6 5.8178 5.1224 -0.0007 10 6 7.0486 6.0531 0.0274 11 6 8.1599 5.1420 0.6121 12 1 8.1078 5.1116 1.7005 13 6 9.5441 5.5965 0.1448 14 1 9.6024 5.5254 -0.9412 15 6 10.6139 4.7008 0.7726 16 7 9.7674 6.9887 0.5570 17 6 10.7441 7.6474 -0.3204 18 6 10.9464 9.0705 0.1320 19 8 10.3371 9.4943 1.0914 20 7 11.8042 9.8725 -0.5294 21 6 11.9886 11.1671 -0.1175 22 1 11.4467 11.5442 0.7373 23 6 12.8725 11.9941 -0.7997 24 7 13.0496 13.2348 -0.4045 25 14 13.8103 11.3417 -2.2776 26 1 15.0972 10.7534 -1.8272 27 1 14.0788 12.4542 -3.2239 28 1 13.0002 10.2988 -2.9569 29 6 7.7904 3.7681 -0.0007 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9563 -0.8901 37 1 3.7289 3.2892 0.8888 38 1 3.7282 3.2886 -0.8912 39 1 5.2028 5.2944 0.8825 40 1 5.2329 5.3084 -0.9015 41 1 6.8698 6.9093 0.6779 42 1 7.3079 6.3800 -0.9796 43 1 11.6027 5.0753 0.5075 44 1 10.5020 4.7065 1.8569 45 1 10.4994 3.6827 0.4009 46 1 10.0576 7.0378 1.5222 47 1 10.3734 7.6416 -1.3456 48 1 11.6928 7.1127 -0.2741 49 1 12.2911 9.5337 -1.2969 50 1 13.6670 13.8119 -0.8806 51 1 8.1717 3.6921 -1.0190 52 1 8.1854 2.9597 0.6145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278983354.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:42 Heat of formation + Delta-G solvation = -144.747232 kcal Electronic energy + Delta-G solvation = -29230.444604 eV Core-core repulsion = 25035.779723 eV Total energy + Delta-G solvation = -4194.664881 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.26025 -40.31762 -39.42220 -38.50335 -37.04373 -35.91623 -34.60091 -33.74412 -33.15344 -31.27984 -30.07715 -28.55214 -27.99815 -26.58792 -25.71535 -24.28705 -22.85102 -22.48090 -21.43045 -21.08261 -20.38643 -20.18094 -18.40672 -17.91278 -17.62332 -17.50608 -16.98073 -16.72012 -16.49668 -16.40678 -16.04734 -15.72048 -15.21382 -14.96236 -14.86394 -14.66004 -14.59273 -14.55404 -14.28851 -13.87448 -13.70865 -13.58700 -13.51791 -13.21856 -13.04166 -13.03113 -12.98476 -12.88834 -12.73813 -12.39302 -12.13362 -11.97481 -11.86370 -11.84265 -11.80119 -11.69522 -11.50061 -11.47558 -10.93807 -10.70414 -10.38994 -10.22061 -9.71931 -9.24631 -8.39247 -5.99752 1.31794 1.36925 1.45811 1.48464 1.63349 2.00097 2.24643 2.72912 2.83505 3.17923 3.31967 3.52869 3.68092 3.79028 4.00381 4.02170 4.08237 4.16539 4.18710 4.19386 4.30753 4.34890 4.38871 4.40822 4.42748 4.47331 4.55710 4.57557 4.62586 4.63783 4.72421 4.84129 4.86141 4.88084 5.03390 5.06558 5.15344 5.16153 5.22418 5.28195 5.35148 5.36301 5.46519 5.55451 5.94654 6.07679 6.11928 6.42157 6.45250 6.62605 6.91263 7.05659 7.43386 8.00273 8.78441 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027899 B = 0.001556 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.372669 B =17993.799209 C =18357.284249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.055 3.945 4 O -0.402 6.402 5 C 0.052 3.948 6 C 0.521 3.479 7 O -0.578 6.578 8 N -0.616 5.616 9 C 0.093 3.907 10 C -0.108 4.108 11 C -0.079 4.079 12 H 0.080 0.920 13 C 0.100 3.900 14 H 0.093 0.907 15 C -0.184 4.184 16 N -0.672 5.672 17 C 0.063 3.937 18 C 0.450 3.550 19 O -0.613 6.613 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.936 5.936 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.277 1.277 28 H -0.230 1.230 29 C 0.115 3.885 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.344 0.656 47 H 0.114 0.886 48 H 0.074 0.926 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.075 0.925 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.155 -24.682 -4.612 31.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C -0.020 4.020 4 O -0.321 6.321 5 C -0.027 4.027 6 C 0.310 3.690 7 O -0.458 6.458 8 N -0.350 5.350 9 C -0.029 4.029 10 C -0.146 4.146 11 C -0.099 4.099 12 H 0.098 0.902 13 C -0.010 4.010 14 H 0.111 0.889 15 C -0.242 4.242 16 N -0.303 5.303 17 C -0.069 4.069 18 C 0.238 3.762 19 O -0.497 6.497 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.577 5.577 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.202 1.202 28 H -0.153 1.153 29 C -0.008 4.008 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.163 0.837 47 H 0.132 0.868 48 H 0.092 0.908 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.094 0.906 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.710 -24.766 -4.334 31.947 hybrid contribution 1.609 0.229 -0.094 1.628 sum -18.101 -24.537 -4.428 30.811 Atomic orbital electron populations 1.21670 0.92928 1.02872 1.02733 1.21483 0.97056 0.95220 1.02599 1.22835 0.78712 0.98745 1.01750 1.87956 1.21659 1.26739 1.95777 1.22267 0.88876 0.86585 1.04960 1.20539 0.89829 0.82739 0.75851 1.90704 1.75704 1.27880 1.51473 1.48522 1.07499 1.06540 1.72472 1.22400 0.97959 0.78951 1.03557 1.22458 0.92439 0.97148 1.02537 1.22210 0.94521 0.92795 1.00386 0.90189 1.21508 0.93198 0.85845 1.00485 0.88896 1.22528 0.99191 1.01055 1.01471 1.60109 1.48265 1.15182 1.06757 1.21645 0.96633 0.89537 0.99103 1.21022 0.81242 0.89196 0.84738 1.90547 1.50761 1.77335 1.31039 1.42048 1.40561 1.10953 1.29909 1.19014 1.24762 0.87636 1.14292 0.92623 1.26084 0.98084 0.95162 1.01935 1.69804 1.37415 1.07700 1.42732 0.85389 0.79342 0.79380 0.77562 1.18322 1.20209 1.15305 1.22248 0.79501 0.97757 1.01301 0.91575 0.91790 0.91728 0.92047 0.92122 0.91635 0.91536 0.87790 0.87580 0.89664 0.89128 0.89907 0.90330 0.92410 0.92501 0.90915 0.83687 0.86798 0.90835 0.77538 0.91231 0.90648 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.91 71.98 0.71 -0.35 16 2 C -0.13 -1.53 6.30 30.59 0.19 -1.33 16 3 C 0.06 0.68 5.94 71.98 0.43 1.10 16 4 O -0.40 -8.15 9.88 -129.94 -1.28 -9.43 16 5 C 0.05 0.77 5.61 71.24 0.40 1.17 16 6 C 0.52 11.64 7.93 87.66 0.69 12.33 16 7 O -0.58 -18.81 16.75 16.01 0.27 -18.55 16 8 N -0.62 -10.89 3.33 -811.78 -2.70 -13.59 16 9 C 0.09 1.11 6.49 86.73 0.56 1.67 16 10 C -0.11 -1.67 6.05 31.78 0.19 -1.48 16 11 C -0.08 -1.31 2.75 -9.40 -0.03 -1.33 16 12 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 13 C 0.10 1.74 2.13 44.92 0.10 1.83 16 14 H 0.09 1.43 7.70 -2.39 -0.02 1.41 16 15 C -0.18 -2.94 9.00 71.98 0.65 -2.29 16 16 N -0.67 -16.81 5.49 -495.59 -2.72 -19.53 16 17 C 0.06 1.72 5.96 85.56 0.51 2.23 16 18 C 0.45 19.21 7.82 87.66 0.69 19.89 16 19 O -0.61 -32.45 15.78 -3.07 -0.05 -32.50 16 20 N -0.59 -26.94 5.09 -306.97 -1.56 -28.50 16 21 C -0.33 -18.82 10.16 84.04 0.85 -17.97 16 22 H 0.06 3.82 7.39 -2.91 -0.02 3.80 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 24 N -0.94 -55.82 13.96 21.66 0.30 -55.52 16 25 Si 0.96 37.97 27.74 68.60 1.90 39.88 16 26 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 28 H -0.23 -7.53 6.52 99.48 0.65 -6.88 16 29 C 0.11 2.02 5.78 86.85 0.50 2.52 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 37 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 43 H 0.06 0.95 7.36 -2.39 -0.02 0.93 16 44 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 45 H 0.07 1.02 7.76 -2.39 -0.02 1.00 16 46 H 0.34 9.65 8.18 -89.69 -0.73 8.92 16 47 H 0.11 2.58 8.06 -2.38 -0.02 2.56 16 48 H 0.07 1.66 7.37 -2.39 -0.02 1.64 16 49 H 0.39 14.56 5.76 -92.71 -0.53 14.02 16 50 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 51 H 0.08 1.25 7.96 -2.38 -0.02 1.23 16 52 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 Total: -1.00 -83.11 421.96 0.66 -82.45 By element: Atomic # 1 Polarization: 38.02 SS G_CDS: -0.42 Total: 37.60 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 6.92 Total: 17.70 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -6.68 Total: -117.15 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -1.06 Total: -60.48 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.88 kcal Total: -83.11 0.66 -82.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278983354.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.301 kcal (2) G-P(sol) polarization free energy of solvation -83.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds