Wall clock time and date at job start Wed Apr 1 2020 01:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99841 * 2 1 4 4 C 1.50703 * 109.46915 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00211 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99659 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00516 * 0.02562 * 6 4 3 8 8 C 1.46501 * 119.99531 * 180.02562 * 6 4 3 9 9 C 1.50693 * 109.47367 * 270.00098 * 8 6 4 10 10 O 1.21289 * 120.00156 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00434 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00413 * 180.27832 * 11 9 8 13 13 H 1.09005 * 109.46577 * 324.72007 * 12 11 9 14 14 C 1.52998 * 109.47450 * 84.71683 * 12 11 9 15 15 C 1.52999 * 109.47070 * 204.72530 * 12 11 9 16 16 C 1.53048 * 109.45545 * 300.05925 * 15 12 11 17 17 C 1.53195 * 109.30996 * 178.61508 * 16 15 12 18 18 N 1.46926 * 108.77228 * 54.63813 * 17 16 15 19 19 C 1.36938 * 120.62871 * 126.41255 * 18 17 16 20 20 H 1.08011 * 120.00122 * 331.80729 * 19 18 17 21 21 C 1.38810 * 120.00235 * 151.80773 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08042 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.07913 * 21 19 18 24 24 H 1.48493 * 109.47392 * 90.00124 * 23 21 19 25 25 H 1.48504 * 109.47184 * 210.00515 * 23 21 19 26 26 H 1.48508 * 109.47341 * 330.00078 * 23 21 19 27 27 C 1.46917 * 118.74388 * 306.38864 * 18 17 16 28 28 C 1.53039 * 109.45955 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.46695 * 299.99465 * 1 2 3 30 30 H 1.08999 * 109.47026 * 59.99257 * 1 2 3 31 31 H 1.08996 * 109.46528 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47072 * 60.00620 * 3 2 1 33 33 H 1.08997 * 109.47348 * 300.00221 * 3 2 1 34 34 H 1.09001 * 109.46701 * 269.99975 * 7 6 4 35 35 H 1.09003 * 109.46740 * 29.99433 * 7 6 4 36 36 H 1.08995 * 109.47568 * 149.99790 * 7 6 4 37 37 H 1.09005 * 109.46991 * 149.99843 * 8 6 4 38 38 H 1.08999 * 109.47740 * 30.00385 * 8 6 4 39 39 H 0.97006 * 119.99784 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.46770 * 300.00323 * 14 12 11 41 41 H 1.09006 * 109.46739 * 60.00060 * 14 12 11 42 42 H 1.08995 * 109.46744 * 180.02562 * 14 12 11 43 43 H 1.08991 * 109.46575 * 60.01722 * 15 12 11 44 44 H 1.08997 * 109.50189 * 298.56846 * 16 15 12 45 45 H 1.09002 * 109.49209 * 58.67105 * 16 15 12 46 46 H 1.08999 * 109.58776 * 294.85107 * 17 16 15 47 47 H 1.09002 * 109.70180 * 174.49139 * 17 16 15 48 48 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.58787 * 293.82520 * 27 18 17 50 50 H 1.08999 * 109.59221 * 173.39586 * 27 18 17 51 51 H 1.08994 * 109.49795 * 301.33293 * 28 15 12 52 52 H 1.09001 * 109.49834 * 61.39820 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 3.6465 3.6195 0.0014 8 6 5.7369 2.1812 -0.0014 9 6 6.2387 2.1402 1.4189 10 8 5.4538 2.2021 2.3415 11 7 7.5599 2.0358 1.6642 12 6 8.0473 1.9899 3.0450 13 1 7.4258 2.6301 3.6711 14 6 7.9806 0.5514 3.5618 15 6 9.4952 2.4819 3.0913 16 6 10.3673 1.5838 2.2108 17 6 11.8095 2.1000 2.2322 18 7 12.2573 2.1943 3.6284 19 6 13.4127 1.5810 4.0334 20 1 13.7600 0.6936 3.5250 21 6 14.1378 2.0999 5.0973 22 7 13.9218 3.3337 5.5015 23 14 15.4201 1.0469 5.9555 24 1 16.7359 1.2306 5.2923 25 1 15.5225 1.4544 7.3799 26 1 15.0211 -0.3814 5.8769 27 6 11.4423 2.9596 4.5816 28 6 10.0039 2.4344 4.5339 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.4895 3.9483 -1.0259 35 1 2.6871 3.5642 0.5158 36 1 4.2940 4.3298 0.5154 37 1 6.1690 3.0401 -0.5149 38 1 6.0285 1.2658 -0.5163 39 1 8.1877 1.9867 0.9263 40 1 6.9490 0.2010 3.5288 41 1 8.6021 -0.0888 2.9356 42 1 8.3428 0.5174 4.5893 43 1 9.5425 3.5068 2.7235 44 1 10.3404 0.5633 2.5927 45 1 9.9901 1.6003 1.1883 46 1 11.8520 3.0850 1.7675 47 1 12.4546 1.4107 1.6873 48 1 14.4281 3.6961 6.2452 49 1 11.4548 4.0147 4.3085 50 1 11.8434 2.8356 5.5874 51 1 9.3683 3.0560 5.1645 52 1 9.9799 1.4061 4.8945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279136273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:04 Heat of formation + Delta-G solvation = -88.810811 kcal Electronic energy + Delta-G solvation = -30649.130053 eV Core-core repulsion = 26456.890758 eV Total energy + Delta-G solvation = -4192.239295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.63269 -39.58080 -38.14866 -37.63326 -35.79083 -35.17003 -32.91605 -31.40895 -30.38339 -29.73438 -28.91469 -28.15204 -26.82192 -25.76777 -25.29859 -23.33944 -22.37394 -21.13090 -20.28676 -19.69249 -18.65712 -17.77366 -17.58267 -17.09328 -16.67301 -16.52425 -16.17576 -15.65634 -15.10522 -14.93016 -14.80313 -14.57745 -14.23053 -13.94491 -13.68195 -13.55546 -13.35565 -13.29556 -13.13401 -12.90899 -12.73972 -12.59926 -12.47702 -12.17536 -12.05708 -11.83425 -11.61543 -11.38234 -11.22355 -10.90675 -10.69037 -10.43767 -10.23985 -10.19643 -10.17038 -10.09726 -10.06267 -9.88726 -9.52144 -9.41413 -9.02350 -8.92276 -8.45704 -6.65410 -5.78212 -3.20413 2.15488 2.36035 2.60320 3.24573 3.37741 3.45048 3.47597 3.53090 4.18412 4.50358 4.54784 4.64150 4.66037 4.76695 4.78382 4.89051 4.93886 4.99699 5.08949 5.13783 5.17867 5.25098 5.27429 5.35313 5.41079 5.54744 5.69831 5.76134 5.87530 5.90456 6.05532 6.13661 6.18983 6.30543 6.40387 6.44864 6.53021 6.58991 6.65367 6.74971 6.78415 6.83034 6.92572 7.00066 7.38951 7.52302 7.67098 7.80333 7.83918 8.22160 8.46307 9.22561 9.86223 10.42943 11.30266 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.001909 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.935743 B =14667.634539 C =14870.580190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.520 3.480 5 O -0.513 6.513 6 N -0.600 5.600 7 C 0.079 3.921 8 C 0.096 3.904 9 C 0.495 3.505 10 O -0.537 6.537 11 N -0.720 5.720 12 C 0.147 3.853 13 H 0.081 0.919 14 C -0.162 4.162 15 C -0.084 4.084 16 C -0.129 4.129 17 C 0.146 3.854 18 N -0.591 5.591 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.400 0.600 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.065 0.935 45 H 0.044 0.956 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.016 0.984 50 H 0.087 0.913 51 H 0.049 0.951 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.652 1.758 -13.709 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.307 3.693 5 O -0.387 6.387 6 N -0.335 5.335 7 C -0.064 4.064 8 C -0.030 4.030 9 C 0.280 3.720 10 O -0.413 6.413 11 N -0.373 5.373 12 C 0.043 3.957 13 H 0.100 0.900 14 C -0.220 4.220 15 C -0.103 4.103 16 C -0.168 4.168 17 C 0.019 3.981 18 N -0.314 5.314 19 C -0.381 4.381 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.214 1.214 25 H -0.216 1.216 26 H -0.205 1.205 27 C 0.046 3.954 28 C -0.174 4.174 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.235 0.765 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.105 0.895 51 H 0.068 0.932 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.751 1.117 -12.906 27.936 hybrid contribution 0.780 -0.051 0.199 0.807 sum -23.971 1.066 -12.707 27.152 Atomic orbital electron populations 1.22848 0.80246 1.03437 1.00122 1.88027 1.19883 1.25186 1.95409 1.22243 0.91399 0.87026 1.02548 1.20230 0.88819 0.84038 0.76191 1.90742 1.74394 1.26153 1.47391 1.47274 1.05213 1.06660 1.74368 1.21868 0.99137 0.83576 1.01777 1.21335 0.80900 1.05813 0.94966 1.21079 0.82784 0.76354 0.91819 1.90688 1.55314 1.49348 1.45969 1.46221 1.06937 1.74364 1.09729 1.21111 0.95585 0.97393 0.81589 0.90043 1.22217 1.01503 0.96307 1.01990 1.21312 0.91397 0.99247 0.98336 1.22124 0.97843 0.99888 0.96978 1.20881 0.92032 0.97325 0.87851 1.44029 1.23798 1.60879 1.02695 1.19166 0.99439 1.04932 1.14570 0.91803 1.25035 0.97958 0.95300 1.01371 1.70025 1.43186 1.12725 1.28832 0.86328 0.81507 0.80124 0.78992 1.21439 1.21579 1.20501 1.20760 0.85820 0.92447 0.96364 1.22263 1.00049 1.01559 0.93524 0.93711 0.93800 0.88996 0.89954 0.90194 0.92009 0.90891 0.90456 0.87183 0.86741 0.76506 0.93035 0.92093 0.91135 0.91488 0.91662 0.93749 0.96709 0.92911 0.93670 0.96567 0.89470 0.93242 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.02 10.24 -55.14 -0.56 -4.58 16 3 C 0.05 0.40 4.97 36.01 0.18 0.58 16 4 C 0.52 6.23 7.75 -10.98 -0.09 6.15 16 5 O -0.51 -8.53 16.08 -14.35 -0.23 -8.76 16 6 N -0.60 -5.63 2.36 -182.96 -0.43 -6.06 16 7 C 0.08 0.43 10.24 59.85 0.61 1.04 16 8 C 0.10 0.88 5.89 -5.20 -0.03 0.85 16 9 C 0.50 6.36 7.86 -10.99 -0.09 6.27 16 10 O -0.54 -8.98 16.10 5.55 0.09 -8.89 16 11 N -0.72 -8.68 5.00 -53.80 -0.27 -8.95 16 12 C 0.15 2.11 2.40 -67.93 -0.16 1.94 16 13 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 14 C -0.16 -2.40 8.78 37.16 0.33 -2.08 16 15 C -0.08 -1.31 2.14 -90.58 -0.19 -1.51 16 16 C -0.13 -2.05 4.82 -26.61 -0.13 -2.18 16 17 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 18 N -0.59 -14.48 2.99 -172.32 -0.52 -14.99 16 19 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 20 H 0.06 1.71 7.89 -52.48 -0.41 1.30 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 22 N -0.90 -26.07 11.20 55.49 0.62 -25.45 16 23 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 28 C -0.13 -2.48 4.97 -26.61 -0.13 -2.61 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.55 7.40 -51.93 -0.38 0.17 16 33 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 35 H 0.07 0.31 6.44 -51.93 -0.33 -0.02 16 36 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 37 H 0.11 0.60 8.07 -51.93 -0.42 0.18 16 38 H 0.11 1.08 7.42 -51.93 -0.39 0.69 16 39 H 0.40 3.91 6.84 -40.82 -0.28 3.63 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 0.89 6.46 -51.93 -0.34 0.55 16 42 H 0.07 1.05 6.46 -51.93 -0.34 0.72 16 43 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 1.11 6.51 -51.93 -0.34 0.77 16 45 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 51 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 52 H 0.06 1.16 6.51 -51.93 -0.34 0.83 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -36.77 407.81 -7.85 -44.62 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -8.80 Total: 0.67 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 1.14 Total: 9.63 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.60 Total: -55.45 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.71 Total: -22.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.77 -7.85 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279136273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.190 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds