Wall clock time and date at job start Wed Apr 1 2020 01:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99841 * 2 1 4 4 C 1.50703 * 109.46915 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00211 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99659 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00516 * 0.02562 * 6 4 3 8 8 C 1.46501 * 119.99531 * 180.02562 * 6 4 3 9 9 C 1.50693 * 109.47367 * 270.00098 * 8 6 4 10 10 O 1.21289 * 120.00156 * 359.97438 * 9 8 6 11 11 N 1.34775 * 120.00434 * 180.02562 * 9 8 6 12 12 C 1.46505 * 120.00413 * 180.27832 * 11 9 8 13 13 H 1.09005 * 109.46577 * 324.72007 * 12 11 9 14 14 C 1.52998 * 109.47450 * 84.71683 * 12 11 9 15 15 C 1.52999 * 109.47070 * 204.72530 * 12 11 9 16 16 C 1.53048 * 109.45545 * 300.05925 * 15 12 11 17 17 C 1.53195 * 109.30996 * 178.61508 * 16 15 12 18 18 N 1.46926 * 108.77228 * 54.63813 * 17 16 15 19 19 C 1.36938 * 120.62871 * 126.41255 * 18 17 16 20 20 H 1.08011 * 120.00122 * 331.80729 * 19 18 17 21 21 C 1.38810 * 120.00235 * 151.80773 * 19 18 17 22 22 N 1.31616 * 120.00086 * 343.08042 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 163.07913 * 21 19 18 24 24 H 1.48493 * 109.47392 * 90.00124 * 23 21 19 25 25 H 1.48504 * 109.47184 * 210.00515 * 23 21 19 26 26 H 1.48508 * 109.47341 * 330.00078 * 23 21 19 27 27 C 1.46917 * 118.74388 * 306.38864 * 18 17 16 28 28 C 1.53039 * 109.45955 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.46695 * 299.99465 * 1 2 3 30 30 H 1.08999 * 109.47026 * 59.99257 * 1 2 3 31 31 H 1.08996 * 109.46528 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47072 * 60.00620 * 3 2 1 33 33 H 1.08997 * 109.47348 * 300.00221 * 3 2 1 34 34 H 1.09001 * 109.46701 * 269.99975 * 7 6 4 35 35 H 1.09003 * 109.46740 * 29.99433 * 7 6 4 36 36 H 1.08995 * 109.47568 * 149.99790 * 7 6 4 37 37 H 1.09005 * 109.46991 * 149.99843 * 8 6 4 38 38 H 1.08999 * 109.47740 * 30.00385 * 8 6 4 39 39 H 0.97006 * 119.99784 * 359.97438 * 11 9 8 40 40 H 1.08999 * 109.46770 * 300.00323 * 14 12 11 41 41 H 1.09006 * 109.46739 * 60.00060 * 14 12 11 42 42 H 1.08995 * 109.46744 * 180.02562 * 14 12 11 43 43 H 1.08991 * 109.46575 * 60.01722 * 15 12 11 44 44 H 1.08997 * 109.50189 * 298.56846 * 16 15 12 45 45 H 1.09002 * 109.49209 * 58.67105 * 16 15 12 46 46 H 1.08999 * 109.58776 * 294.85107 * 17 16 15 47 47 H 1.09002 * 109.70180 * 174.49139 * 17 16 15 48 48 H 0.96995 * 120.00443 * 179.97438 * 22 21 19 49 49 H 1.09001 * 109.58787 * 293.82520 * 27 18 17 50 50 H 1.08999 * 109.59221 * 173.39586 * 27 18 17 51 51 H 1.08994 * 109.49795 * 301.33293 * 28 15 12 52 52 H 1.09001 * 109.49834 * 61.39820 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2765 2.2969 -0.0002 7 6 3.6465 3.6195 0.0014 8 6 5.7369 2.1812 -0.0014 9 6 6.2387 2.1402 1.4189 10 8 5.4538 2.2021 2.3415 11 7 7.5599 2.0358 1.6642 12 6 8.0473 1.9899 3.0450 13 1 7.4258 2.6301 3.6711 14 6 7.9806 0.5514 3.5618 15 6 9.4952 2.4819 3.0913 16 6 10.3673 1.5838 2.2108 17 6 11.8095 2.1000 2.2322 18 7 12.2573 2.1943 3.6284 19 6 13.4127 1.5810 4.0334 20 1 13.7600 0.6936 3.5250 21 6 14.1378 2.0999 5.0973 22 7 13.9218 3.3337 5.5015 23 14 15.4201 1.0469 5.9555 24 1 16.7359 1.2306 5.2923 25 1 15.5225 1.4544 7.3799 26 1 15.0211 -0.3814 5.8769 27 6 11.4423 2.9596 4.5816 28 6 10.0039 2.4344 4.5339 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.4895 3.9483 -1.0259 35 1 2.6871 3.5642 0.5158 36 1 4.2940 4.3298 0.5154 37 1 6.1690 3.0401 -0.5149 38 1 6.0285 1.2658 -0.5163 39 1 8.1877 1.9867 0.9263 40 1 6.9490 0.2010 3.5288 41 1 8.6021 -0.0888 2.9356 42 1 8.3428 0.5174 4.5893 43 1 9.5425 3.5068 2.7235 44 1 10.3404 0.5633 2.5927 45 1 9.9901 1.6003 1.1883 46 1 11.8520 3.0850 1.7675 47 1 12.4546 1.4107 1.6873 48 1 14.4281 3.6961 6.2452 49 1 11.4548 4.0147 4.3085 50 1 11.8434 2.8356 5.5874 51 1 9.3683 3.0560 5.1645 52 1 9.9799 1.4061 4.8945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279136273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:03 Heat of formation + Delta-G solvation = -114.557454 kcal Electronic energy + Delta-G solvation = -30650.246511 eV Core-core repulsion = 26456.890758 eV Total energy + Delta-G solvation = -4193.355754 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.52509 -40.61996 -39.42091 -38.41069 -36.91455 -36.36757 -34.48023 -32.94926 -31.57150 -31.09949 -30.21011 -28.80717 -27.37880 -27.14159 -26.31130 -24.85381 -23.92131 -22.48226 -21.56681 -20.52498 -20.10610 -18.71325 -18.46085 -18.35562 -17.81855 -17.22711 -17.14445 -16.74762 -16.47061 -15.94061 -15.85743 -15.68997 -15.43592 -15.32853 -15.28830 -14.76631 -14.57353 -14.15415 -14.10177 -13.97849 -13.86613 -13.68960 -13.34297 -13.14788 -13.03949 -12.98431 -12.92829 -12.87310 -12.60569 -12.45255 -12.34195 -12.15582 -11.95950 -11.65642 -11.60970 -11.24578 -11.08221 -10.96902 -10.91354 -10.77759 -10.51669 -10.08646 -9.75785 -8.64496 -7.86066 -5.30541 1.37208 1.45739 1.47951 1.57042 1.62446 1.67908 2.31819 2.51998 2.97540 3.28582 3.55670 3.70466 3.73866 3.86998 3.89545 4.06426 4.07457 4.19040 4.21663 4.30445 4.37187 4.39373 4.41536 4.49288 4.56462 4.58794 4.61617 4.73984 4.74680 4.80035 4.86046 4.92470 4.93544 4.95134 5.03923 5.16685 5.21998 5.28630 5.29292 5.32344 5.45125 5.54263 5.58939 5.68473 5.81773 5.98534 6.27460 6.41420 6.56560 7.05226 7.17362 7.26064 7.90122 8.40753 9.19999 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030562 B = 0.001909 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.935743 B =14667.634539 C =14870.580190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.049 3.951 4 C 0.507 3.493 5 O -0.575 6.575 6 N -0.598 5.598 7 C 0.071 3.929 8 C 0.097 3.903 9 C 0.493 3.507 10 O -0.580 6.580 11 N -0.711 5.711 12 C 0.160 3.840 13 H 0.070 0.930 14 C -0.156 4.156 15 C -0.071 4.071 16 C -0.117 4.117 17 C 0.140 3.860 18 N -0.610 5.610 19 C -0.260 4.260 20 H 0.065 0.935 21 C -0.051 4.051 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.284 1.284 25 H -0.294 1.294 26 H -0.272 1.272 27 C 0.179 3.821 28 C -0.123 4.123 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.155 0.845 38 H 0.112 0.888 39 H 0.414 0.586 40 H 0.038 0.962 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.016 0.984 47 H 0.052 0.948 48 H 0.249 0.751 49 H -0.004 1.004 50 H 0.050 0.950 51 H 0.062 0.938 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.271 2.242 -15.802 30.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.030 4.030 4 C 0.296 3.704 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.070 4.070 8 C -0.029 4.029 9 C 0.279 3.721 10 O -0.459 6.459 11 N -0.364 5.364 12 C 0.055 3.945 13 H 0.088 0.912 14 C -0.215 4.215 15 C -0.090 4.090 16 C -0.156 4.156 17 C 0.015 3.985 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.247 4.247 22 N -0.581 5.581 23 Si 0.791 3.209 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.053 3.947 28 C -0.163 4.163 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.095 0.905 37 H 0.173 0.827 38 H 0.130 0.870 39 H 0.251 0.749 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.034 0.966 47 H 0.071 0.929 48 H 0.058 0.942 49 H 0.014 0.986 50 H 0.068 0.932 51 H 0.081 0.919 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -26.385 1.636 -15.052 30.420 hybrid contribution 1.262 -0.146 0.812 1.508 sum -25.123 1.490 -14.240 28.916 Atomic orbital electron populations 1.23040 0.78159 1.04168 1.01732 1.87968 1.22310 1.26930 1.95783 1.22407 0.88951 0.86669 1.05003 1.21014 0.90526 0.83748 0.75138 1.90701 1.75658 1.28443 1.50521 1.47481 1.05298 1.07580 1.72733 1.22177 0.99380 0.81406 1.04051 1.21490 0.81262 1.07696 0.92482 1.21772 0.82368 0.74992 0.92983 1.90672 1.56312 1.51292 1.47633 1.46071 1.07302 1.73963 1.09085 1.20758 0.94198 0.96599 0.82909 0.91227 1.22156 1.00653 0.96698 1.01948 1.21140 0.92062 0.99618 0.96205 1.21988 0.95110 0.99018 0.99440 1.21075 0.94453 0.97606 0.85403 1.44299 1.23492 1.60780 1.04792 1.19495 1.00053 1.04957 1.14513 0.91727 1.25755 1.00249 0.96324 1.02341 1.70172 1.44450 1.14225 1.29267 0.85349 0.79240 0.78828 0.77470 1.21101 1.22023 1.19726 1.20546 0.88342 0.91559 0.94273 1.22064 0.97064 1.01077 0.96084 0.92555 0.91623 0.88882 0.88304 0.86436 0.88796 0.89752 0.90466 0.82722 0.86976 0.74856 0.94331 0.91617 0.91585 0.91019 0.92336 0.89566 0.96556 0.92894 0.94209 0.98601 0.93177 0.91945 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.68 10.24 -129.94 -1.33 -10.01 16 3 C 0.05 0.73 4.97 71.24 0.35 1.08 16 4 C 0.51 11.61 7.75 87.66 0.68 12.29 16 5 O -0.57 -19.38 16.08 16.02 0.26 -19.12 16 6 N -0.60 -9.84 2.36 -851.14 -2.01 -11.85 16 7 C 0.07 0.52 10.24 127.77 1.31 1.83 16 8 C 0.10 1.53 5.89 85.63 0.50 2.04 16 9 C 0.49 11.77 7.86 87.66 0.69 12.46 16 10 O -0.58 -18.95 16.10 -3.06 -0.05 -19.00 16 11 N -0.71 -15.43 5.00 -442.52 -2.21 -17.64 16 12 C 0.16 4.33 2.40 44.99 0.11 4.44 16 13 H 0.07 2.11 7.58 -2.38 -0.02 2.09 16 14 C -0.16 -4.49 8.78 71.98 0.63 -3.86 16 15 C -0.07 -2.10 2.14 -10.76 -0.02 -2.13 16 16 C -0.12 -3.44 4.82 30.68 0.15 -3.29 16 17 C 0.14 5.43 6.52 86.36 0.56 6.00 16 18 N -0.61 -30.04 2.99 -699.10 -2.09 -32.14 16 19 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 20 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 21 C -0.05 -2.88 4.92 84.86 0.42 -2.47 16 22 N -0.93 -55.48 11.20 21.65 0.24 -55.24 16 23 Si 0.96 45.17 29.59 68.60 2.03 47.20 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.18 8.52 5.30 86.37 0.46 8.98 16 28 C -0.12 -4.51 4.97 30.67 0.15 -4.36 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 1.10 7.40 -2.39 -0.02 1.09 16 33 H 0.12 0.80 8.11 -2.39 -0.02 0.78 16 34 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.08 0.43 6.44 -2.39 -0.02 0.42 16 36 H 0.08 0.61 8.07 -2.39 -0.02 0.59 16 37 H 0.16 1.02 8.07 -2.38 -0.02 1.00 16 38 H 0.11 1.91 7.42 -2.39 -0.02 1.89 16 39 H 0.41 6.61 6.84 -92.70 -0.63 5.98 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.06 1.81 6.46 -2.38 -0.02 1.80 16 42 H 0.07 1.94 6.46 -2.39 -0.02 1.92 16 43 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 44 H 0.06 1.85 6.51 -2.39 -0.02 1.84 16 45 H 0.09 1.85 6.46 -2.39 -0.02 1.83 16 46 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 48 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 49 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 50 H 0.05 2.75 6.06 -2.39 -0.01 2.73 16 51 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.06 2.12 6.51 -2.39 -0.02 2.11 16 Total: -1.00 -84.37 407.81 3.16 -81.21 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.28 Total: 15.51 kcal Atomic # 6 Polarization: 13.04 SS G_CDS: 8.04 Total: 21.08 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -6.07 Total: -116.88 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -1.12 Total: -48.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -84.37 3.16 -81.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279136273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.344 kcal (2) G-P(sol) polarization free energy of solvation -84.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds