Wall clock time and date at job start Wed Apr 1 2020 00:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 O 1.42902 * 109.47511 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00114 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46972 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00124 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00048 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00198 * 179.97438 * 8 6 5 10 10 H 1.09007 * 108.74072 * 36.53909 * 9 8 6 11 11 C 1.54170 * 108.85320 * 278.08829 * 9 8 6 12 12 C 1.53826 * 111.96596 * 197.68134 * 11 9 8 13 13 C 1.50813 * 111.62090 * 319.03778 * 12 11 9 14 14 N 1.47643 * 108.05273 * 95.06216 * 13 12 11 15 15 C 1.46899 * 111.00084 * 150.34561 * 14 13 12 16 16 C 1.50698 * 109.46987 * 298.88720 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47425 * 90.00231 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00087 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00093 * 23 21 19 27 27 C 1.39782 * 114.75444 * 277.19814 * 14 13 12 28 28 C 1.50745 * 108.85663 * 154.99747 * 9 8 6 29 29 H 1.08998 * 109.46662 * 299.99670 * 1 2 3 30 30 H 1.09002 * 109.47357 * 59.99689 * 1 2 3 31 31 H 1.08995 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47188 * 240.00996 * 2 1 3 33 33 H 1.08990 * 109.47702 * 120.00180 * 2 1 3 34 34 H 1.09000 * 109.46859 * 60.00075 * 3 2 1 35 35 H 1.09002 * 109.47236 * 300.00385 * 3 2 1 36 36 H 1.09003 * 109.46989 * 59.99630 * 5 4 3 37 37 H 1.08999 * 109.46888 * 300.00039 * 5 4 3 38 38 H 0.96996 * 119.99820 * 359.97438 * 8 6 5 39 39 H 1.08994 * 108.98172 * 318.31492 * 11 9 8 40 40 H 1.08997 * 108.98404 * 77.12716 * 11 9 8 41 41 H 1.09002 * 109.05273 * 79.59407 * 12 11 9 42 42 H 1.09003 * 109.04868 * 198.49251 * 12 11 9 43 43 H 1.08997 * 109.75357 * 335.42446 * 13 12 11 44 44 H 1.09003 * 109.74844 * 214.69613 * 13 12 11 45 45 H 1.09003 * 109.46477 * 178.89210 * 15 14 13 46 46 H 1.08993 * 109.47002 * 58.89536 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08995 * 109.02130 * 182.86051 * 27 14 13 50 50 H 1.09002 * 109.02005 * 301.68493 * 27 14 13 51 51 H 1.09000 * 109.54966 * 93.95894 * 28 9 8 52 52 H 1.09003 * 109.54430 * 333.69096 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7481 -0.0001 6 6 5.5525 2.6291 -0.0014 7 8 6.0741 1.5342 -0.0022 8 7 6.3164 3.7395 -0.0007 9 6 7.7768 3.6239 -0.0014 10 1 8.0603 2.7700 -0.6169 11 6 8.2579 3.3785 1.4426 12 6 9.7583 3.6750 1.6075 13 6 10.5564 3.1739 0.4301 14 7 10.7298 4.2945 -0.5154 15 6 11.9841 4.1592 -1.2679 16 6 13.1484 4.1792 -0.3113 17 8 12.9524 4.2943 0.8801 18 7 14.4072 4.0681 -0.7797 19 6 15.4668 4.0919 0.0900 20 1 15.2924 4.1952 1.1509 21 6 16.7650 3.9831 -0.3933 22 7 16.9772 3.8579 -1.6842 23 14 18.2086 4.0149 0.7917 24 1 18.5205 2.6306 1.2292 25 1 19.3935 4.5982 0.1129 26 1 17.8594 4.8412 1.9752 27 6 9.6493 4.5061 -1.3766 28 6 8.3643 4.8748 -0.6034 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7289 3.2885 0.8904 37 1 3.7282 3.2895 -0.8896 38 1 5.8992 4.6151 0.0004 39 1 7.6933 4.0208 2.1184 40 1 8.0725 2.3372 1.7060 41 1 9.9000 4.7517 1.7011 42 1 10.1193 3.1898 2.5144 43 1 10.0210 2.3597 -0.0582 44 1 11.5316 2.8235 0.7685 45 1 12.0771 4.9871 -1.9708 46 1 11.9795 3.2166 -1.8152 47 1 14.5639 3.9756 -1.7325 48 1 17.8834 3.7817 -2.0215 49 1 9.8955 5.3161 -2.0631 50 1 9.4697 3.5974 -1.9512 51 1 8.6063 5.5823 0.1897 52 1 7.6436 5.3238 -1.2869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280711900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:38 Heat of formation + Delta-G solvation = -116.054669 kcal Electronic energy + Delta-G solvation = -29825.799986 eV Core-core repulsion = 25632.379308 eV Total energy + Delta-G solvation = -4193.420678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.39415 -39.30777 -38.20527 -37.50520 -35.38022 -34.09747 -33.84061 -32.98353 -31.48654 -31.18605 -28.94808 -27.60369 -26.04989 -25.47955 -24.53493 -23.66891 -22.03286 -21.17199 -20.51062 -19.55576 -19.10458 -17.83290 -17.49515 -17.20449 -16.91480 -16.19916 -15.96562 -15.64635 -15.31418 -15.20505 -14.89818 -14.55080 -14.33495 -13.91954 -13.89316 -13.83240 -13.56889 -13.51163 -12.97923 -12.64746 -12.55944 -12.42127 -12.19755 -12.12381 -11.99958 -11.72736 -11.46126 -11.38415 -11.33313 -11.31455 -11.11293 -11.00131 -10.64506 -10.41817 -10.33996 -10.19627 -10.18295 -10.12396 -9.89785 -9.42651 -9.18316 -8.33105 -7.92521 -7.74060 -6.38865 -3.79401 2.40483 2.51140 3.19840 3.28402 3.34173 3.57863 3.94301 4.06260 4.27080 4.38536 4.48446 4.58011 4.69037 4.74163 4.75196 4.84621 4.85085 4.99541 5.00217 5.01610 5.11571 5.25760 5.27917 5.31271 5.34033 5.49056 5.50365 5.54590 5.67322 5.70508 5.76600 5.82522 5.87876 5.88790 5.94609 6.05824 6.09780 6.23063 6.28999 6.33935 6.38920 6.64375 6.66610 6.73863 7.27841 7.41073 7.57867 7.78866 8.03077 8.10079 8.65145 9.21240 9.58180 10.09852 10.78955 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.001618 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.536052 B =17303.156415 C =17420.185675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.516 6.516 8 N -0.727 5.727 9 C 0.147 3.853 10 H 0.083 0.917 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.066 3.934 14 N -0.536 5.536 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.575 6.575 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.081 3.919 28 C -0.124 4.124 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.073 0.927 50 H 0.017 0.983 51 H 0.085 0.915 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.954 0.466 -0.701 29.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.035 4.035 6 C 0.295 3.705 7 O -0.390 6.390 8 N -0.381 5.381 9 C 0.044 3.956 10 H 0.101 0.899 11 C -0.166 4.166 12 C -0.142 4.142 13 C -0.060 4.060 14 N -0.261 5.261 15 C -0.080 4.080 16 C 0.228 3.772 17 O -0.459 6.459 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.049 4.049 28 C -0.162 4.162 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.232 0.768 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.035 0.965 51 H 0.104 0.896 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -29.407 -0.085 0.258 29.408 hybrid contribution 0.394 0.039 -0.625 0.740 sum -29.013 -0.047 -0.367 29.015 Atomic orbital electron populations 1.21696 0.94627 1.02388 1.01957 1.21455 0.95616 0.95364 1.03775 1.22644 0.80462 0.98381 1.00203 1.88024 1.19580 1.25192 1.95416 1.22198 0.91872 0.87010 1.02449 1.20249 0.88535 0.84889 0.76826 1.90755 1.74503 1.26448 1.47265 1.46212 1.07362 1.08373 1.76122 1.21024 0.77544 0.99429 0.97607 0.89908 1.22348 0.97271 1.01859 0.95114 1.21238 0.91771 1.03038 0.98172 1.21911 1.01772 0.89825 0.92475 1.58340 1.01389 1.45411 1.20924 1.21796 0.89687 1.01022 0.95470 1.19763 0.83738 0.84321 0.89334 1.90502 1.84562 1.54587 1.16272 1.41882 1.04398 1.63887 1.10031 1.19694 0.84091 1.46921 0.92039 0.87925 1.25246 0.98851 0.97389 0.96451 1.69614 1.22447 1.50217 1.12111 0.85871 0.80116 0.78482 0.79895 1.20471 1.20978 1.19439 1.20833 0.90466 0.99738 0.93859 1.21783 0.96695 0.97113 1.00654 0.92522 0.92533 0.91896 0.90921 0.90909 0.93162 0.93177 0.90349 0.90392 0.76786 0.92239 0.91941 0.90306 0.91825 0.95370 0.88422 0.89507 0.93524 0.77530 0.91932 0.90856 0.96549 0.89615 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.12 -0.82 6.30 -26.73 -0.17 -0.99 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 O -0.36 -3.86 9.88 -55.14 -0.54 -4.41 16 5 C 0.04 0.35 6.42 36.00 0.23 0.58 16 6 C 0.51 5.78 7.82 -10.99 -0.09 5.69 16 7 O -0.52 -8.53 16.17 -14.36 -0.23 -8.77 16 8 N -0.73 -6.51 4.95 -54.31 -0.27 -6.78 16 9 C 0.15 1.68 1.94 -68.45 -0.13 1.55 16 10 H 0.08 1.17 6.02 -51.93 -0.31 0.86 16 11 C -0.13 -1.60 5.43 -25.69 -0.14 -1.74 16 12 C -0.10 -1.55 5.41 -27.40 -0.15 -1.69 16 13 C 0.07 1.12 4.62 -4.51 -0.02 1.10 16 14 N -0.54 -8.69 3.76 -241.44 -0.91 -9.60 16 15 C 0.05 0.90 5.45 -4.98 -0.03 0.88 16 16 C 0.44 10.30 7.20 -10.99 -0.08 10.22 16 17 O -0.58 -15.06 13.87 5.55 0.08 -14.98 16 18 N -0.57 -14.24 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.08 1.03 4.93 -6.74 -0.03 1.00 16 28 C -0.12 -1.27 5.20 -27.11 -0.14 -1.41 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.40 2.15 8.49 -40.82 -0.35 1.80 16 39 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.25 7.26 -51.93 -0.38 0.87 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.03 0.46 6.66 -51.93 -0.35 0.11 16 44 H 0.10 1.98 5.61 -51.93 -0.29 1.69 16 45 H 0.09 1.38 7.83 -51.93 -0.41 0.97 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.07 0.85 7.80 -51.93 -0.40 0.44 16 50 H 0.02 0.22 7.54 -51.93 -0.39 -0.18 16 51 H 0.09 0.93 7.11 -51.93 -0.37 0.56 16 52 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -34.28 410.98 -9.42 -43.70 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -8.98 Total: 9.13 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -0.40 Total: 7.58 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.51 Total: -54.55 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.70 Total: -28.15 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.28 -9.42 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280711900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.354 kcal (2) G-P(sol) polarization free energy of solvation -34.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds