Wall clock time and date at job start Wed Apr 1 2020 00:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47167 * 2 1 4 4 O 1.42902 * 109.47511 * 180.02562 * 3 2 1 5 5 C 1.42901 * 114.00114 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.46972 * 180.02562 * 5 4 3 7 7 O 1.21281 * 120.00124 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00048 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00198 * 179.97438 * 8 6 5 10 10 H 1.09007 * 108.74072 * 36.53909 * 9 8 6 11 11 C 1.54170 * 108.85320 * 278.08829 * 9 8 6 12 12 C 1.53826 * 111.96596 * 197.68134 * 11 9 8 13 13 C 1.50813 * 111.62090 * 319.03778 * 12 11 9 14 14 N 1.47643 * 108.05273 * 95.06216 * 13 12 11 15 15 C 1.46899 * 111.00084 * 150.34561 * 14 13 12 16 16 C 1.50698 * 109.46987 * 298.88720 * 15 14 13 17 17 O 1.21293 * 120.00006 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99538 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 15 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47425 * 90.00231 * 23 21 19 25 25 H 1.48499 * 109.47218 * 210.00087 * 23 21 19 26 26 H 1.48505 * 109.47256 * 330.00093 * 23 21 19 27 27 C 1.39782 * 114.75444 * 277.19814 * 14 13 12 28 28 C 1.50745 * 108.85663 * 154.99747 * 9 8 6 29 29 H 1.08998 * 109.46662 * 299.99670 * 1 2 3 30 30 H 1.09002 * 109.47357 * 59.99689 * 1 2 3 31 31 H 1.08995 * 109.47080 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47188 * 240.00996 * 2 1 3 33 33 H 1.08990 * 109.47702 * 120.00180 * 2 1 3 34 34 H 1.09000 * 109.46859 * 60.00075 * 3 2 1 35 35 H 1.09002 * 109.47236 * 300.00385 * 3 2 1 36 36 H 1.09003 * 109.46989 * 59.99630 * 5 4 3 37 37 H 1.08999 * 109.46888 * 300.00039 * 5 4 3 38 38 H 0.96996 * 119.99820 * 359.97438 * 8 6 5 39 39 H 1.08994 * 108.98172 * 318.31492 * 11 9 8 40 40 H 1.08997 * 108.98404 * 77.12716 * 11 9 8 41 41 H 1.09002 * 109.05273 * 79.59407 * 12 11 9 42 42 H 1.09003 * 109.04868 * 198.49251 * 12 11 9 43 43 H 1.08997 * 109.75357 * 335.42446 * 13 12 11 44 44 H 1.09003 * 109.74844 * 214.69613 * 13 12 11 45 45 H 1.09003 * 109.46477 * 178.89210 * 15 14 13 46 46 H 1.08993 * 109.47002 * 58.89536 * 15 14 13 47 47 H 0.97001 * 120.00485 * 0.02562 * 18 16 15 48 48 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 49 49 H 1.08995 * 109.02130 * 182.86051 * 27 14 13 50 50 H 1.09002 * 109.02005 * 301.68493 * 27 14 13 51 51 H 1.09000 * 109.54966 * 93.95894 * 28 9 8 52 52 H 1.09003 * 109.54430 * 333.69096 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0502 2.7481 -0.0001 6 6 5.5525 2.6291 -0.0014 7 8 6.0741 1.5342 -0.0022 8 7 6.3164 3.7395 -0.0007 9 6 7.7768 3.6239 -0.0014 10 1 8.0603 2.7700 -0.6169 11 6 8.2579 3.3785 1.4426 12 6 9.7583 3.6750 1.6075 13 6 10.5564 3.1739 0.4301 14 7 10.7298 4.2945 -0.5154 15 6 11.9841 4.1592 -1.2679 16 6 13.1484 4.1792 -0.3113 17 8 12.9524 4.2943 0.8801 18 7 14.4072 4.0681 -0.7797 19 6 15.4668 4.0919 0.0900 20 1 15.2924 4.1952 1.1509 21 6 16.7650 3.9831 -0.3933 22 7 16.9772 3.8579 -1.6842 23 14 18.2086 4.0149 0.7917 24 1 18.5205 2.6306 1.2292 25 1 19.3935 4.5982 0.1129 26 1 17.8594 4.8412 1.9752 27 6 9.6493 4.5061 -1.3766 28 6 8.3643 4.8748 -0.6034 29 1 -0.3632 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 3.7289 3.2885 0.8904 37 1 3.7282 3.2895 -0.8896 38 1 5.8992 4.6151 0.0004 39 1 7.6933 4.0208 2.1184 40 1 8.0725 2.3372 1.7060 41 1 9.9000 4.7517 1.7011 42 1 10.1193 3.1898 2.5144 43 1 10.0210 2.3597 -0.0582 44 1 11.5316 2.8235 0.7685 45 1 12.0771 4.9871 -1.9708 46 1 11.9795 3.2166 -1.8152 47 1 14.5639 3.9756 -1.7325 48 1 17.8834 3.7817 -2.0215 49 1 9.8955 5.3161 -2.0631 50 1 9.4697 3.5974 -1.9512 51 1 8.6063 5.5823 0.1897 52 1 7.6436 5.3238 -1.2869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280711900.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:37 Heat of formation + Delta-G solvation = -141.265434 kcal Electronic energy + Delta-G solvation = -29826.893207 eV Core-core repulsion = 25632.379308 eV Total energy + Delta-G solvation = -4194.513899 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39682 -40.56869 -39.37868 -38.62200 -36.54967 -35.79407 -34.59591 -34.12228 -33.20570 -32.51595 -29.89743 -28.75721 -27.00273 -26.63101 -25.85660 -24.98385 -22.52949 -22.22057 -21.41805 -21.06452 -20.54360 -19.84793 -18.26336 -18.03002 -17.62350 -17.48136 -17.09921 -16.73715 -16.63444 -16.41353 -16.05842 -15.75948 -15.64552 -15.43930 -15.12930 -14.97973 -14.65529 -14.38176 -14.23620 -13.76779 -13.50221 -13.47331 -13.19902 -13.07076 -13.00852 -12.92717 -12.88593 -12.70607 -12.48338 -12.38663 -12.12856 -12.08467 -11.87391 -11.82060 -11.79483 -11.70630 -11.36438 -11.30991 -10.82245 -10.67329 -10.20925 -10.08742 -9.95240 -9.08341 -8.44170 -5.92209 1.38733 1.42229 1.54822 1.57468 1.81431 2.09480 2.30224 2.82769 2.98230 3.23113 3.37664 3.66956 3.76622 3.88290 4.03138 4.05704 4.10582 4.13820 4.21982 4.24637 4.30521 4.33234 4.41652 4.44455 4.48506 4.55902 4.56933 4.60021 4.64922 4.69966 4.74053 4.79260 4.84115 4.92432 5.06818 5.13818 5.16246 5.22181 5.22590 5.34783 5.39709 5.43479 5.48280 5.50509 5.94776 6.11366 6.13741 6.57554 6.59545 6.64931 7.16066 7.26892 7.60385 8.16074 8.73373 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.032606 B = 0.001618 C = 0.001607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.536052 B =17303.156415 C =17420.185675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.047 3.953 6 C 0.504 3.496 7 O -0.578 6.578 8 N -0.708 5.708 9 C 0.153 3.847 10 H 0.054 0.946 11 C -0.116 4.116 12 C -0.096 4.096 13 C 0.072 3.928 14 N -0.541 5.541 15 C 0.060 3.940 16 C 0.441 3.559 17 O -0.608 6.608 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.922 5.922 23 Si 0.991 3.009 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.073 3.927 28 C -0.112 4.112 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.420 0.580 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.030 0.970 44 H 0.056 0.944 45 H 0.114 0.886 46 H 0.059 0.941 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.094 0.906 50 H 0.016 0.984 51 H 0.086 0.914 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.177 2.417 -1.464 32.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.325 6.325 5 C -0.032 4.032 6 C 0.291 3.709 7 O -0.457 6.457 8 N -0.362 5.362 9 C 0.049 3.951 10 H 0.072 0.928 11 C -0.155 4.155 12 C -0.134 4.134 13 C -0.055 4.055 14 N -0.266 5.266 15 C -0.070 4.070 16 C 0.229 3.771 17 O -0.494 6.494 18 N -0.214 5.214 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.563 5.563 23 Si 0.815 3.185 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.057 4.057 28 C -0.150 4.150 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.259 0.741 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.132 0.868 46 H 0.077 0.923 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.112 0.888 50 H 0.034 0.966 51 H 0.104 0.896 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -31.675 1.917 -0.529 31.737 hybrid contribution 1.031 -0.585 -0.383 1.245 sum -30.644 1.332 -0.912 30.686 Atomic orbital electron populations 1.21663 0.92854 1.02811 1.02796 1.21495 0.97138 0.95525 1.02421 1.22813 0.78811 0.98476 1.01817 1.87980 1.21599 1.27092 1.95806 1.22349 0.88797 0.86596 1.05447 1.21032 0.90307 0.84211 0.75315 1.90734 1.75851 1.28867 1.50256 1.45987 1.06189 1.09172 1.74869 1.20787 0.79154 0.99150 0.96053 0.92779 1.22215 0.95610 1.00928 0.96760 1.21121 0.93254 1.02213 0.96826 1.21741 0.99738 0.90475 0.93540 1.58406 1.01922 1.44785 1.21493 1.21719 0.88155 1.02787 0.94351 1.20757 0.84464 0.82083 0.89827 1.90479 1.85215 1.55421 1.18240 1.41945 1.04757 1.64841 1.09859 1.19656 0.85691 1.49046 0.91578 0.90278 1.26000 1.00706 0.96449 0.98123 1.69677 1.23305 1.50145 1.13199 0.84951 0.77151 0.78565 0.77811 1.19896 1.19579 1.19728 1.21040 0.90249 1.00436 0.93962 1.21723 0.96069 0.96185 1.01062 0.91673 0.91623 0.91761 0.92282 0.92351 0.91492 0.91392 0.87230 0.87039 0.74135 0.90249 0.94066 0.90873 0.93045 0.95207 0.92509 0.86800 0.92263 0.77147 0.91425 0.88803 0.96618 0.89574 0.87260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.13 -1.62 6.30 30.60 0.19 -1.43 16 3 C 0.06 0.67 5.94 71.98 0.43 1.10 16 4 O -0.41 -8.12 9.88 -129.94 -1.28 -9.40 16 5 C 0.05 0.61 6.42 71.23 0.46 1.06 16 6 C 0.50 10.70 7.82 87.66 0.69 11.39 16 7 O -0.58 -19.53 16.17 16.00 0.26 -19.28 16 8 N -0.71 -10.83 4.95 -444.13 -2.20 -13.03 16 9 C 0.15 3.27 1.94 44.66 0.09 3.35 16 10 H 0.05 1.52 6.02 -2.38 -0.01 1.50 16 11 C -0.12 -2.89 5.43 31.27 0.17 -2.72 16 12 C -0.10 -2.91 5.41 30.16 0.16 -2.75 16 13 C 0.07 2.49 4.62 85.45 0.39 2.89 16 14 N -0.54 -17.18 3.76 -917.79 -3.45 -20.63 16 15 C 0.06 2.11 5.45 85.56 0.47 2.57 16 16 C 0.44 21.00 7.20 87.66 0.63 21.63 16 17 O -0.61 -33.03 13.87 -3.07 -0.04 -33.07 16 18 N -0.58 -29.76 5.29 -306.98 -1.62 -31.38 16 19 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 22 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 23 Si 0.99 43.47 29.55 68.60 2.03 45.49 16 24 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.07 1.68 4.93 88.07 0.43 2.11 16 28 C -0.11 -1.96 5.20 30.35 0.16 -1.80 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.42 2.75 8.49 -92.71 -0.79 1.96 16 39 H 0.08 1.65 8.13 -2.39 -0.02 1.63 16 40 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 2.31 7.26 -2.39 -0.02 2.30 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.03 1.01 6.66 -2.39 -0.02 0.99 16 44 H 0.06 2.44 5.61 -2.39 -0.01 2.43 16 45 H 0.11 3.39 7.83 -2.39 -0.02 3.37 16 46 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.39 19.47 7.90 -92.71 -0.73 18.73 16 48 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 49 H 0.09 1.83 7.80 -2.39 -0.02 1.81 16 50 H 0.02 0.38 7.54 -2.39 -0.02 0.36 16 51 H 0.09 1.59 7.11 -2.39 -0.02 1.57 16 52 H 0.11 1.17 7.88 -2.39 -0.02 1.15 16 Total: -1.00 -79.02 410.98 -0.36 -79.38 By element: Atomic # 1 Polarization: 33.78 SS G_CDS: -0.59 Total: 33.19 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 6.26 Total: 18.73 kcal Atomic # 7 Polarization: -108.06 SS G_CDS: -6.99 Total: -115.05 kcal Atomic # 8 Polarization: -60.69 SS G_CDS: -1.07 Total: -61.75 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -79.02 -0.36 -79.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280711900.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.885 kcal (2) G-P(sol) polarization free energy of solvation -79.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds