Wall clock time and date at job start Wed Apr 1 2020 00:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 O 1.42905 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00036 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47252 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99465 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00065 * 180.27746 * 6 5 4 9 9 C 1.46498 * 119.99716 * 179.72451 * 8 6 5 10 10 H 1.09002 * 109.57584 * 325.24465 * 9 8 6 11 11 C 1.50462 * 109.57431 * 85.62396 * 9 8 6 12 12 C 1.54297 * 113.03421 * 211.95953 * 11 9 8 13 13 C 1.54058 * 112.29205 * 318.29998 * 12 11 9 14 14 N 1.44278 * 111.97406 * 318.91720 * 13 12 11 15 15 C 1.46901 * 110.99788 * 219.30764 * 14 13 12 16 16 C 1.50697 * 109.47442 * 301.97567 * 15 14 13 17 17 O 1.21289 * 120.00059 * 4.75044 * 16 15 14 18 18 N 1.34777 * 119.99684 * 184.75371 * 16 15 14 19 19 C 1.37099 * 119.99700 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00158 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99929 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00009 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00031 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47128 * 119.99738 * 23 21 19 26 26 H 1.48499 * 109.47099 * 240.00035 * 23 21 19 27 27 C 1.47806 * 109.45550 * 96.44428 * 14 13 12 28 28 C 1.45862 * 112.92046 * 276.72426 * 27 14 13 29 29 H 1.09000 * 109.46834 * 59.99435 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46866 * 300.00021 * 1 2 3 32 32 H 1.09011 * 109.46718 * 240.00253 * 2 1 3 33 33 H 1.09000 * 109.46834 * 120.00565 * 2 1 3 34 34 H 1.08997 * 109.46891 * 60.00517 * 3 2 1 35 35 H 1.09000 * 109.47638 * 300.00072 * 3 2 1 36 36 H 1.08998 * 109.47025 * 60.00121 * 5 4 3 37 37 H 1.09002 * 109.47167 * 300.00249 * 5 4 3 38 38 H 0.97000 * 119.99948 * 359.72265 * 8 6 5 39 39 H 1.09000 * 108.77051 * 332.87483 * 11 9 8 40 40 H 1.08994 * 108.77058 * 91.04463 * 11 9 8 41 41 H 1.09000 * 108.91778 * 197.57281 * 12 11 9 42 42 H 1.08999 * 108.84197 * 78.97662 * 12 11 9 43 43 H 1.08990 * 108.98407 * 198.27368 * 13 12 11 44 44 H 1.09008 * 108.98142 * 79.55733 * 13 12 11 45 45 H 1.09002 * 109.46588 * 61.97588 * 15 14 13 46 46 H 1.08998 * 109.46854 * 181.96728 * 15 14 13 47 47 H 0.96998 * 120.00181 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99720 * 179.97438 * 22 21 19 49 49 H 1.08999 * 108.78898 * 155.83373 * 27 14 13 50 50 H 1.08996 * 108.70363 * 37.55013 * 27 14 13 51 51 H 1.08998 * 109.05682 * 300.77801 * 28 27 14 52 52 H 1.09000 * 109.05329 * 181.87083 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0504 2.7478 0.0012 6 6 5.5527 2.6287 0.0012 7 8 6.0742 1.5337 0.0012 8 7 6.3167 3.7390 0.0074 9 6 7.7771 3.6232 0.0135 10 1 8.0719 2.7516 0.5980 11 6 8.2772 3.4791 -1.3983 12 6 9.5506 2.6140 -1.5024 13 6 10.5573 2.9182 -0.3766 14 7 10.6574 4.3325 -0.1094 15 6 12.0489 4.7205 0.1577 16 6 12.5754 3.9294 1.3272 17 8 11.8927 3.0614 1.8289 18 7 13.8049 4.1864 1.8158 19 6 14.2838 3.4670 2.8801 20 1 13.6756 2.6947 3.3273 21 6 15.5516 3.7316 3.3835 22 7 16.2918 4.6710 2.8390 23 14 16.2043 2.7509 4.8332 24 1 15.1849 1.7584 5.2587 25 1 17.4467 2.0429 4.4327 26 1 16.5004 3.6713 5.9603 27 6 9.7823 4.6815 1.0295 28 6 8.3946 4.8960 0.6347 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.7284 3.2884 0.8912 37 1 3.7291 3.2890 -0.8887 38 1 5.8996 4.6148 0.0078 39 1 7.4933 3.0236 -2.0033 40 1 8.4931 4.4704 -1.7967 41 1 10.0281 2.8024 -2.4639 42 1 9.2674 1.5629 -1.4488 43 1 11.5382 2.5420 -0.6669 44 1 10.2381 2.4075 0.5320 45 1 12.6582 4.5166 -0.7228 46 1 12.0910 5.7846 0.3902 47 1 14.3510 4.8803 1.4144 48 1 17.1767 4.8559 3.1907 49 1 10.1595 5.5915 1.4960 50 1 9.8188 3.8725 1.7590 51 1 8.3532 5.7045 -0.0952 52 1 7.8149 5.1809 1.5126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280711903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:42 Heat of formation + Delta-G solvation = -120.966478 kcal Electronic energy + Delta-G solvation = -30163.807222 eV Core-core repulsion = 25970.173552 eV Total energy + Delta-G solvation = -4193.633670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.28996 -39.34098 -38.17430 -37.31179 -35.17431 -34.03987 -33.84862 -32.55359 -31.95820 -31.28026 -28.92590 -27.59167 -26.02544 -25.24036 -24.28199 -23.75585 -21.97531 -20.90151 -20.53956 -19.77116 -18.98081 -17.83643 -17.39890 -17.12791 -16.84288 -16.09815 -15.98850 -15.51818 -15.28091 -15.08494 -14.68343 -14.56770 -14.20387 -14.15271 -13.85177 -13.74420 -13.49093 -13.43533 -12.76554 -12.63525 -12.49707 -12.42175 -12.36232 -12.21628 -11.70588 -11.51581 -11.46395 -11.31676 -11.27353 -11.17222 -10.97621 -10.71325 -10.57130 -10.36765 -10.34031 -10.26129 -10.05736 -10.04962 -9.79022 -9.52384 -9.11757 -9.08968 -8.00334 -7.55033 -6.45331 -3.86423 2.51642 2.60119 3.13278 3.24704 3.31952 3.66705 3.84979 4.14907 4.28382 4.48442 4.53803 4.64135 4.72380 4.76801 4.83543 4.90369 5.00626 5.04748 5.06381 5.14743 5.21471 5.30161 5.30943 5.42587 5.50575 5.58703 5.58998 5.67939 5.72433 5.75997 5.81858 5.92374 6.00052 6.10097 6.13037 6.20989 6.25123 6.31686 6.39691 6.45246 6.52222 6.58432 6.72392 6.74166 7.35878 7.42273 7.51733 7.53711 8.01728 8.14593 8.56300 9.13719 9.49996 10.00489 10.71466 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.001848 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.155096 B =15149.670760 C =15935.886665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.045 3.955 6 C 0.510 3.490 7 O -0.514 6.514 8 N -0.725 5.725 9 C 0.148 3.852 10 H 0.090 0.910 11 C -0.113 4.113 12 C -0.107 4.107 13 C 0.057 3.943 14 N -0.504 5.504 15 C 0.042 3.958 16 C 0.406 3.594 17 O -0.594 6.594 18 N -0.558 5.558 19 C -0.301 4.301 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.899 5.899 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.047 3.953 28 C -0.112 4.112 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.397 0.603 39 H 0.052 0.948 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.066 0.934 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.865 2.580 -8.787 27.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.282 6.282 5 C -0.035 4.035 6 C 0.294 3.706 7 O -0.388 6.388 8 N -0.378 5.378 9 C 0.044 3.956 10 H 0.108 0.892 11 C -0.152 4.152 12 C -0.146 4.146 13 C -0.072 4.072 14 N -0.227 5.227 15 C -0.090 4.090 16 C 0.191 3.809 17 O -0.480 6.480 18 N -0.194 5.194 19 C -0.431 4.431 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.540 5.540 23 Si 0.755 3.245 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.081 4.081 28 C -0.150 4.150 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.231 0.769 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -25.800 1.331 -8.826 27.300 hybrid contribution 0.796 0.362 1.189 1.476 sum -25.004 1.694 -7.636 26.199 Atomic orbital electron populations 1.21696 0.94666 1.02356 1.01935 1.21457 0.95578 0.95407 1.03790 1.22635 0.80541 0.98339 1.00167 1.88027 1.19505 1.25236 1.95407 1.22199 0.91956 0.86954 1.02394 1.20211 0.88456 0.84890 0.76996 1.90765 1.74470 1.26395 1.47121 1.46053 1.07380 1.08313 1.76101 1.20841 0.77270 0.99760 0.97695 0.89158 1.21550 0.97024 1.00951 0.95637 1.21934 0.94843 0.98759 0.99024 1.21885 0.98688 0.88399 0.98246 1.62045 1.05695 1.17539 1.37380 1.22222 0.89561 0.99844 0.97339 1.21081 0.83696 0.87997 0.88149 1.90504 1.58162 1.36140 1.63244 1.42023 1.13979 1.33852 1.29536 1.19766 0.99344 1.16237 1.07733 0.87949 1.25272 0.96190 0.97097 0.99268 1.69616 1.11279 1.31262 1.41845 0.85819 0.78784 0.79369 0.80497 1.19256 1.20702 1.20724 1.20937 0.91979 1.02200 0.93005 1.20841 0.96541 0.96777 1.00874 0.92558 0.91919 0.92529 0.90926 0.90888 0.93186 0.93208 0.90385 0.90441 0.76934 0.92925 0.91452 0.92329 0.92275 0.92180 0.91845 0.89211 0.89474 0.77418 0.91864 0.91596 0.91732 0.91101 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.89 6.30 -26.73 -0.17 -1.06 16 3 C 0.06 0.45 5.94 37.16 0.22 0.67 16 4 O -0.36 -4.13 9.88 -55.14 -0.54 -4.67 16 5 C 0.05 0.39 6.42 36.01 0.23 0.62 16 6 C 0.51 6.29 7.73 -10.98 -0.08 6.21 16 7 O -0.51 -9.09 16.16 -14.36 -0.23 -9.32 16 8 N -0.73 -7.27 4.99 -54.27 -0.27 -7.54 16 9 C 0.15 1.87 2.12 -68.41 -0.15 1.73 16 10 H 0.09 1.48 6.60 -51.93 -0.34 1.14 16 11 C -0.11 -1.44 5.12 -27.32 -0.14 -1.58 16 12 C -0.11 -1.53 6.15 -25.50 -0.16 -1.69 16 13 C 0.06 0.97 3.75 -4.67 -0.02 0.95 16 14 N -0.50 -8.06 4.45 -241.00 -1.07 -9.13 16 15 C 0.04 0.73 5.54 -4.98 -0.03 0.70 16 16 C 0.41 9.19 7.03 -10.99 -0.08 9.11 16 17 O -0.59 -15.21 11.97 5.55 0.07 -15.14 16 18 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.56 16 23 Si 0.93 21.06 29.55 -169.99 -5.02 16.04 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.05 0.72 4.20 -6.70 -0.03 0.69 16 28 C -0.11 -1.31 5.02 -29.32 -0.15 -1.45 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 2.51 8.61 -40.82 -0.35 2.15 16 39 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 40 H 0.07 0.81 7.38 -51.93 -0.38 0.42 16 41 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.11 7.32 -51.93 -0.38 0.73 16 44 H 0.06 1.27 5.46 -51.92 -0.28 0.99 16 45 H 0.09 1.43 8.10 -51.93 -0.42 1.01 16 46 H 0.09 1.35 7.95 -51.93 -0.41 0.93 16 47 H 0.39 9.37 7.90 -40.82 -0.32 9.04 16 48 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.07 1.00 7.68 -51.93 -0.40 0.60 16 50 H 0.06 1.22 5.90 -51.93 -0.31 0.91 16 51 H 0.07 0.73 7.59 -51.93 -0.39 0.34 16 52 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 408.55 15.07 6.16 6.16 Total: -1.00 -33.84 408.55 -9.65 -43.49 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.99 Total: 11.01 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -0.41 Total: 6.59 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.68 Total: -54.16 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.71 Total: -29.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.84 -9.65 -43.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280711903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.472 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds