Wall clock time and date at job start Wed Apr 1 2020 00:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47299 * 2 1 4 4 O 1.42905 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.42895 * 114.00036 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47252 * 180.02562 * 5 4 3 7 7 O 1.21283 * 119.99465 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00065 * 180.27746 * 6 5 4 9 9 C 1.46498 * 119.99716 * 179.72451 * 8 6 5 10 10 H 1.09002 * 109.57584 * 325.24465 * 9 8 6 11 11 C 1.50462 * 109.57431 * 85.62396 * 9 8 6 12 12 C 1.54297 * 113.03421 * 211.95953 * 11 9 8 13 13 C 1.54058 * 112.29205 * 318.29998 * 12 11 9 14 14 N 1.44278 * 111.97406 * 318.91720 * 13 12 11 15 15 C 1.46901 * 110.99788 * 219.30764 * 14 13 12 16 16 C 1.50697 * 109.47442 * 301.97567 * 15 14 13 17 17 O 1.21289 * 120.00059 * 4.75044 * 16 15 14 18 18 N 1.34777 * 119.99684 * 184.75371 * 16 15 14 19 19 C 1.37099 * 119.99700 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00158 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99929 * 179.97438 * 19 18 16 22 22 N 1.31409 * 120.00009 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00031 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47128 * 119.99738 * 23 21 19 26 26 H 1.48499 * 109.47099 * 240.00035 * 23 21 19 27 27 C 1.47806 * 109.45550 * 96.44428 * 14 13 12 28 28 C 1.45862 * 112.92046 * 276.72426 * 27 14 13 29 29 H 1.09000 * 109.46834 * 59.99435 * 1 2 3 30 30 H 1.08991 * 109.47437 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46866 * 300.00021 * 1 2 3 32 32 H 1.09011 * 109.46718 * 240.00253 * 2 1 3 33 33 H 1.09000 * 109.46834 * 120.00565 * 2 1 3 34 34 H 1.08997 * 109.46891 * 60.00517 * 3 2 1 35 35 H 1.09000 * 109.47638 * 300.00072 * 3 2 1 36 36 H 1.08998 * 109.47025 * 60.00121 * 5 4 3 37 37 H 1.09002 * 109.47167 * 300.00249 * 5 4 3 38 38 H 0.97000 * 119.99948 * 359.72265 * 8 6 5 39 39 H 1.09000 * 108.77051 * 332.87483 * 11 9 8 40 40 H 1.08994 * 108.77058 * 91.04463 * 11 9 8 41 41 H 1.09000 * 108.91778 * 197.57281 * 12 11 9 42 42 H 1.08999 * 108.84197 * 78.97662 * 12 11 9 43 43 H 1.08990 * 108.98407 * 198.27368 * 13 12 11 44 44 H 1.09008 * 108.98142 * 79.55733 * 13 12 11 45 45 H 1.09002 * 109.46588 * 61.97588 * 15 14 13 46 46 H 1.08998 * 109.46854 * 181.96728 * 15 14 13 47 47 H 0.96998 * 120.00181 * 359.97438 * 18 16 15 48 48 H 0.96998 * 119.99720 * 179.97438 * 22 21 19 49 49 H 1.08999 * 108.78898 * 155.83373 * 27 14 13 50 50 H 1.08996 * 108.70363 * 37.55013 * 27 14 13 51 51 H 1.08998 * 109.05682 * 300.77801 * 28 27 14 52 52 H 1.09000 * 109.05329 * 181.87083 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0504 2.7478 0.0012 6 6 5.5527 2.6287 0.0012 7 8 6.0742 1.5337 0.0012 8 7 6.3167 3.7390 0.0074 9 6 7.7771 3.6232 0.0135 10 1 8.0719 2.7516 0.5980 11 6 8.2772 3.4791 -1.3983 12 6 9.5506 2.6140 -1.5024 13 6 10.5573 2.9182 -0.3766 14 7 10.6574 4.3325 -0.1094 15 6 12.0489 4.7205 0.1577 16 6 12.5754 3.9294 1.3272 17 8 11.8927 3.0614 1.8289 18 7 13.8049 4.1864 1.8158 19 6 14.2838 3.4670 2.8801 20 1 13.6756 2.6947 3.3273 21 6 15.5516 3.7316 3.3835 22 7 16.2918 4.6710 2.8390 23 14 16.2043 2.7509 4.8332 24 1 15.1849 1.7584 5.2587 25 1 17.4467 2.0429 4.4327 26 1 16.5004 3.6713 5.9603 27 6 9.7823 4.6815 1.0295 28 6 8.3946 4.8960 0.6347 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6768 1.9562 0.8900 35 1 1.6768 1.9564 -0.8899 36 1 3.7284 3.2884 0.8912 37 1 3.7291 3.2890 -0.8887 38 1 5.8996 4.6148 0.0078 39 1 7.4933 3.0236 -2.0033 40 1 8.4931 4.4704 -1.7967 41 1 10.0281 2.8024 -2.4639 42 1 9.2674 1.5629 -1.4488 43 1 11.5382 2.5420 -0.6669 44 1 10.2381 2.4075 0.5320 45 1 12.6582 4.5166 -0.7228 46 1 12.0910 5.7846 0.3902 47 1 14.3510 4.8803 1.4144 48 1 17.1767 4.8559 3.1907 49 1 10.1595 5.5915 1.4960 50 1 9.8188 3.8725 1.7590 51 1 8.3532 5.7045 -0.0952 52 1 7.8149 5.1809 1.5126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280711903.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:41 Heat of formation + Delta-G solvation = -146.613972 kcal Electronic energy + Delta-G solvation = -30164.919381 eV Core-core repulsion = 25970.173552 eV Total energy + Delta-G solvation = -4194.745829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43703 -40.68877 -39.23703 -38.53279 -36.51738 -35.70996 -34.59066 -33.76502 -33.32388 -33.05097 -29.91522 -28.79390 -27.01941 -26.55873 -25.44069 -25.23263 -22.51706 -22.11454 -21.52774 -21.22471 -20.59006 -19.77346 -18.24421 -18.01582 -17.76470 -17.47379 -17.04852 -16.75481 -16.60871 -16.22489 -16.03843 -15.74523 -15.68839 -15.57018 -15.12942 -14.86071 -14.69998 -14.36512 -14.07611 -13.95799 -13.69203 -13.48913 -13.09814 -13.06614 -12.99839 -12.89266 -12.75357 -12.68357 -12.44948 -12.31756 -12.15609 -11.91394 -11.83514 -11.81541 -11.79269 -11.64149 -11.38672 -11.26457 -10.88251 -10.80575 -10.67055 -10.09220 -10.02066 -9.15898 -8.48729 -5.98063 1.32182 1.38121 1.51532 1.59163 1.82081 2.01718 2.26763 2.94132 3.00341 3.17799 3.25200 3.62900 3.76374 3.98071 4.03154 4.08132 4.11138 4.21420 4.24216 4.31280 4.35785 4.37870 4.41762 4.44613 4.47652 4.54223 4.56925 4.65100 4.67646 4.78212 4.84218 4.92017 4.93825 5.04427 5.14633 5.16212 5.21450 5.22592 5.25957 5.34822 5.36336 5.39515 5.40904 5.55557 5.90224 6.04151 6.11944 6.12647 6.57373 6.61620 7.10265 7.29463 7.53885 8.09435 8.67164 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019601 B = 0.001848 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.155096 B =15149.670760 C =15935.886665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.056 3.944 4 O -0.406 6.406 5 C 0.049 3.951 6 C 0.503 3.497 7 O -0.580 6.580 8 N -0.706 5.706 9 C 0.151 3.849 10 H 0.043 0.957 11 C -0.106 4.106 12 C -0.101 4.101 13 C 0.067 3.933 14 N -0.485 5.485 15 C 0.050 3.950 16 C 0.405 3.595 17 O -0.627 6.627 18 N -0.570 5.570 19 C -0.334 4.334 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.989 3.011 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.269 1.269 27 C 0.050 3.950 28 C -0.103 4.103 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.421 0.579 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.023 0.977 45 H 0.110 0.890 46 H 0.117 0.883 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.073 0.927 50 H 0.020 0.980 51 H 0.102 0.898 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.592 5.312 -9.815 29.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.325 6.325 5 C -0.030 4.030 6 C 0.290 3.710 7 O -0.458 6.458 8 N -0.360 5.360 9 C 0.046 3.954 10 H 0.062 0.938 11 C -0.144 4.144 12 C -0.140 4.140 13 C -0.063 4.063 14 N -0.207 5.207 15 C -0.082 4.082 16 C 0.192 3.808 17 O -0.515 6.515 18 N -0.207 5.207 19 C -0.464 4.464 20 H 0.092 0.908 21 C -0.210 4.210 22 N -0.557 5.557 23 Si 0.813 3.187 24 H -0.203 1.203 25 H -0.196 1.196 26 H -0.194 1.194 27 C -0.078 4.078 28 C -0.141 4.141 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.258 0.742 39 H 0.070 0.930 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.042 0.958 45 H 0.128 0.872 46 H 0.135 0.865 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.091 0.909 50 H 0.038 0.962 51 H 0.120 0.880 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -27.555 4.135 -9.872 29.561 hybrid contribution 1.294 -0.519 1.510 2.055 sum -26.261 3.616 -8.362 27.797 Atomic orbital electron populations 1.21661 0.92770 1.02822 1.02818 1.21503 0.97203 0.95530 1.02399 1.22818 0.78778 0.98487 1.01849 1.87984 1.21644 1.27104 1.95808 1.22337 0.88613 0.86590 1.05482 1.21062 0.90369 0.84165 0.75441 1.90744 1.75902 1.28920 1.50258 1.45809 1.06130 1.09186 1.74828 1.20598 0.79031 0.98599 0.97127 0.93850 1.21498 0.95853 1.01473 0.95586 1.21855 0.95236 0.98401 0.98489 1.21735 0.98304 0.88709 0.97504 1.62226 1.05055 1.16323 1.37066 1.22358 0.90119 1.00394 0.95344 1.22209 0.82594 0.87359 0.88610 1.90514 1.58841 1.37638 1.64517 1.42080 1.14870 1.34178 1.29524 1.19648 1.00109 1.17034 1.09573 0.90820 1.25974 0.95820 0.97850 1.01338 1.69664 1.11624 1.31762 1.42678 0.84934 0.77970 0.78028 0.77773 1.20288 1.19592 1.19381 1.20978 0.94231 1.00657 0.91952 1.20755 0.93983 0.96816 1.02509 0.91531 0.91743 0.91705 0.92227 0.92477 0.91550 0.91240 0.87278 0.86855 0.74153 0.92965 0.89297 0.90468 0.93865 0.94051 0.95833 0.87167 0.86504 0.76910 0.91256 0.90864 0.96204 0.87953 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.91 71.98 0.71 -0.52 16 2 C -0.13 -1.81 6.30 30.59 0.19 -1.62 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 O -0.41 -8.92 9.88 -129.94 -1.28 -10.20 16 5 C 0.05 0.73 6.42 71.24 0.46 1.18 16 6 C 0.50 12.09 7.73 87.66 0.68 12.77 16 7 O -0.58 -21.52 16.16 16.00 0.26 -21.26 16 8 N -0.71 -12.84 4.99 -443.99 -2.21 -15.05 16 9 C 0.15 3.75 2.12 44.68 0.09 3.84 16 10 H 0.04 1.52 6.60 -2.39 -0.02 1.50 16 11 C -0.11 -2.55 5.12 30.21 0.15 -2.39 16 12 C -0.10 -2.92 6.15 31.39 0.19 -2.73 16 13 C 0.07 2.37 3.75 87.15 0.33 2.70 16 14 N -0.49 -15.10 4.45 -916.40 -4.08 -19.18 16 15 C 0.05 1.65 5.54 85.56 0.47 2.12 16 16 C 0.41 18.84 7.03 87.66 0.62 19.45 16 17 O -0.63 -33.91 11.97 -3.06 -0.04 -33.94 16 18 N -0.57 -28.97 5.29 -306.99 -1.62 -30.60 16 19 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 20 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 21 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 22 N -0.92 -49.33 13.05 21.66 0.28 -49.05 16 23 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 C 0.05 1.51 4.20 83.94 0.35 1.86 16 28 C -0.10 -2.17 5.02 28.92 0.15 -2.02 16 29 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.42 3.74 8.61 -92.71 -0.80 2.94 16 39 H 0.05 1.28 7.81 -2.39 -0.02 1.27 16 40 H 0.09 1.80 7.38 -2.39 -0.02 1.78 16 41 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.04 1.59 7.32 -2.39 -0.02 1.57 16 44 H 0.02 1.02 5.46 -2.38 -0.01 1.01 16 45 H 0.11 3.30 8.10 -2.39 -0.02 3.28 16 46 H 0.12 3.29 7.95 -2.39 -0.02 3.27 16 47 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 48 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 49 H 0.07 2.11 7.68 -2.39 -0.02 2.09 16 50 H 0.02 0.78 5.90 -2.39 -0.01 0.77 16 51 H 0.10 1.63 7.59 -2.39 -0.02 1.61 16 52 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.86 408.55 -1.17 -81.03 By element: Atomic # 1 Polarization: 35.77 SS G_CDS: -0.61 Total: 35.16 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: 6.11 Total: 17.53 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -7.63 Total: -113.88 kcal Atomic # 8 Polarization: -64.34 SS G_CDS: -1.06 Total: -65.40 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.86 -1.17 -81.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280711903.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.586 kcal (2) G-P(sol) polarization free energy of solvation -79.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds