Wall clock time and date at job start Wed Apr 1 2020 01:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00049 * 2 1 4 4 C 1.52999 * 109.47273 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47760 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47394 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46993 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.48146 * 127.83527 * 0.02562 * 9 7 6 11 11 C 1.54389 * 104.71947 * 219.63954 * 10 9 7 12 12 H 1.08997 * 110.34484 * 94.94604 * 11 10 9 13 13 C 1.52994 * 110.34346 * 217.20744 * 11 10 9 14 14 C 1.54289 * 104.96102 * 336.07694 * 11 10 9 15 15 H 1.08999 * 110.34342 * 118.97038 * 14 11 10 16 16 N 1.46901 * 110.34318 * 241.12958 * 14 11 10 17 17 C 1.46890 * 110.99958 * 204.99856 * 16 14 11 18 18 C 1.50703 * 109.47189 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99702 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99856 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99991 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00224 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99650 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99897 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47118 * 89.99827 * 25 23 21 27 27 H 1.48505 * 109.46958 * 209.99667 * 25 23 21 28 28 H 1.48495 * 109.47141 * 329.99652 * 25 23 21 29 29 C 1.48427 * 127.98094 * 180.10683 * 9 7 6 30 30 H 1.09001 * 109.47120 * 300.00042 * 1 2 3 31 31 H 1.09002 * 109.46927 * 59.99513 * 1 2 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47350 * 60.00619 * 3 2 1 34 34 H 1.09002 * 109.47719 * 300.00010 * 3 2 1 35 35 H 1.09010 * 109.46915 * 60.00099 * 4 3 2 36 36 H 1.08999 * 109.47678 * 300.00436 * 4 3 2 37 37 H 1.09006 * 109.46386 * 60.00087 * 5 4 3 38 38 H 1.08999 * 109.46840 * 300.00899 * 5 4 3 39 39 H 1.08996 * 109.46752 * 60.00619 * 6 5 4 40 40 H 1.08998 * 109.47172 * 299.99995 * 6 5 4 41 41 H 1.09002 * 110.40776 * 100.79701 * 10 9 7 42 42 H 1.09002 * 110.40863 * 338.48109 * 10 9 7 43 43 H 1.09001 * 109.47260 * 58.54481 * 13 11 10 44 44 H 1.09000 * 109.47306 * 178.54617 * 13 11 10 45 45 H 1.09004 * 109.46825 * 298.54469 * 13 11 10 46 46 H 1.00898 * 110.99741 * 328.95095 * 16 14 11 47 47 H 1.08998 * 109.47283 * 299.99784 * 17 16 14 48 48 H 1.08999 * 109.47630 * 59.99810 * 17 16 14 49 49 H 0.96994 * 120.00764 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99674 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.39413 * 21.58122 * 29 9 7 52 52 H 1.09000 * 110.39150 * 259.16906 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 6 5.6831 2.4614 0.0026 7 6 6.2961 3.8382 0.0039 8 8 5.5832 4.8193 0.0033 9 7 7.6365 3.9790 0.0046 10 6 8.6625 2.9104 0.0038 11 6 9.7633 3.4227 0.9575 12 1 9.6111 3.0243 1.9606 13 6 11.1461 3.0315 0.4326 14 6 9.6051 4.9575 0.9603 15 1 9.3771 5.3130 1.9652 16 7 10.8282 5.5978 0.4583 17 6 10.9576 6.9657 0.9778 18 6 12.2206 7.5892 0.4419 19 8 12.9421 6.9561 -0.2995 20 7 12.5487 8.8499 0.7873 21 6 13.6980 9.4170 0.3002 22 1 14.3406 8.8533 -0.3600 23 6 14.0361 10.7170 0.6559 24 7 15.1375 11.2606 0.1885 25 14 12.9252 11.6917 1.7983 26 1 13.3398 11.4633 3.2057 27 1 13.0334 13.1380 1.4789 28 1 11.5193 11.2489 1.6183 29 6 8.4226 5.2380 0.0080 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 3.8358 3.1229 0.8914 38 1 3.8365 3.1235 -0.8886 39 1 6.0054 1.9207 -0.8872 40 1 6.0039 1.9204 0.8928 41 1 9.0642 2.7699 -0.9997 42 1 8.2400 1.9776 0.3773 43 1 11.2877 3.4487 -0.5644 44 1 11.9126 3.4219 1.1020 45 1 11.2231 1.9452 0.3863 46 1 11.6431 5.0470 0.6831 47 1 10.0984 7.5572 0.6617 48 1 10.9991 6.9384 2.0667 49 1 11.9719 9.3561 1.3805 50 1 15.3737 12.1680 0.4371 51 1 7.8178 6.0625 0.3858 52 1 8.7869 5.4610 -0.9948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281379795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:12 Heat of formation + Delta-G solvation = -111.933673 kcal Electronic energy + Delta-G solvation = -29204.778390 eV Core-core repulsion = 25011.536412 eV Total energy + Delta-G solvation = -4193.241978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41150 -38.85755 -38.40899 -37.99843 -35.12487 -34.86124 -33.88568 -32.36687 -31.64767 -30.69784 -28.93423 -27.22339 -26.65950 -26.12179 -24.53396 -23.70367 -22.81666 -21.58172 -19.65337 -19.46873 -19.31681 -18.38992 -17.35859 -16.85567 -16.73803 -16.36338 -15.97397 -15.88668 -15.65033 -15.50466 -15.19273 -14.91413 -14.62563 -14.21709 -13.94751 -13.76516 -13.32464 -13.22209 -12.97487 -12.88132 -12.63984 -12.45443 -12.35385 -12.10631 -12.03156 -11.97648 -11.90909 -11.86917 -11.77202 -11.39818 -11.21925 -11.20671 -11.07879 -10.94697 -10.87379 -10.59777 -10.13107 -10.02126 -9.98311 -9.58308 -8.95416 -8.60294 -8.24628 -8.17905 -6.32183 -3.83665 2.43555 2.66335 3.02945 3.06414 3.15046 3.29114 3.72386 4.04545 4.10038 4.15253 4.31269 4.43537 4.45980 4.51748 4.66379 4.78724 4.79743 4.84431 4.89701 4.90340 4.97329 5.11688 5.14610 5.17451 5.17882 5.24325 5.27379 5.28402 5.30784 5.33608 5.48296 5.52109 5.59712 5.66747 5.69714 5.75923 5.79757 5.85571 5.88549 5.91577 5.96314 6.03727 6.22486 6.68531 7.04697 7.35251 7.52376 7.57041 7.95735 8.13188 8.58406 8.93699 9.41350 9.80992 10.80870 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.001612 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.065422 B =17363.887344 C =18308.126015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.134 4.134 7 C 0.533 3.467 8 O -0.543 6.543 9 N -0.625 5.625 10 C 0.108 3.892 11 C -0.107 4.107 12 H 0.081 0.919 13 C -0.149 4.149 14 C 0.074 3.926 15 H 0.056 0.944 16 N -0.661 5.661 17 C 0.044 3.956 18 C 0.450 3.550 19 O -0.565 6.565 20 N -0.590 5.590 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.113 3.887 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.359 0.641 47 H 0.087 0.913 48 H 0.046 0.954 49 H 0.371 0.629 50 H 0.273 0.727 51 H 0.078 0.922 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.979 -22.255 3.738 32.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.174 4.174 7 C 0.322 3.678 8 O -0.420 6.420 9 N -0.360 5.360 10 C -0.016 4.016 11 C -0.127 4.127 12 H 0.099 0.901 13 C -0.206 4.206 14 C -0.037 4.037 15 H 0.074 0.926 16 N -0.299 5.299 17 C -0.089 4.089 18 C 0.236 3.764 19 O -0.447 6.447 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.201 1.201 28 H -0.194 1.194 29 C -0.010 4.010 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.184 0.816 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.097 0.903 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.994 -21.946 2.628 32.623 hybrid contribution -0.663 1.126 1.874 2.284 sum -24.657 -20.820 4.501 32.584 Atomic orbital electron populations 1.22742 0.80938 1.02770 1.00067 1.87857 1.19813 1.28274 1.95464 1.22561 0.94158 0.84508 1.00468 1.21527 0.93098 0.97500 1.03475 1.21249 0.92754 0.96042 1.03994 1.21618 0.96720 0.94471 1.04545 1.20323 0.79999 0.91747 0.75745 1.90719 1.59853 1.41101 1.50362 1.49052 1.04548 1.09278 1.73105 1.22504 0.87981 0.90739 1.00340 1.22244 0.96040 0.94894 0.99539 0.90109 1.21778 0.94645 1.01098 1.03111 1.22409 0.91454 0.93380 0.96483 0.92600 1.60303 1.04686 1.02358 1.62540 1.21803 0.98649 0.91252 0.97158 1.19668 0.87913 0.82947 0.85885 1.90559 1.53225 1.62144 1.38795 1.42209 1.23089 1.12908 1.44709 1.19435 0.98479 0.97783 1.27751 0.86251 1.25032 0.96563 0.96578 0.97888 1.69622 1.23196 1.15366 1.43888 0.86680 0.80564 0.80755 0.81461 1.19669 1.20141 1.19443 1.22492 0.90768 0.86625 1.01097 0.94039 0.94027 0.89612 0.93167 0.93126 0.90927 0.90979 0.90919 0.90854 0.88735 0.88826 0.90240 0.90353 0.90196 0.91904 0.92263 0.81563 0.89492 0.93634 0.79675 0.91602 0.90317 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.40 -3.26 10.70 -35.23 -0.38 -3.64 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.73 5.58 -26.73 -0.15 -0.88 16 5 C -0.10 -0.74 4.50 -26.73 -0.12 -0.86 16 6 C -0.13 -0.93 4.68 -27.88 -0.13 -1.06 16 7 C 0.53 5.93 7.92 -10.98 -0.09 5.84 16 8 O -0.54 -8.23 16.27 5.56 0.09 -8.14 16 9 N -0.63 -6.49 3.33 -169.06 -0.56 -7.06 16 10 C 0.11 0.82 6.45 -2.41 -0.02 0.80 16 11 C -0.11 -0.91 3.66 -89.22 -0.33 -1.23 16 12 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 13 C -0.15 -1.29 7.75 37.15 0.29 -1.00 16 14 C 0.07 0.83 3.39 -66.30 -0.22 0.60 16 15 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 16 N -0.66 -9.42 5.27 -106.51 -0.56 -9.98 16 17 C 0.04 0.71 6.02 -4.98 -0.03 0.68 16 18 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 19 O -0.57 -14.76 15.78 5.55 0.09 -14.67 16 20 N -0.59 -13.92 5.09 -10.96 -0.06 -13.98 16 21 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 22 H 0.12 3.83 7.39 -52.48 -0.39 3.44 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.66 13.96 55.50 0.77 -24.88 16 25 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 26 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 28 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 29 C 0.11 1.36 6.76 -2.25 -0.02 1.35 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.49 7.95 -51.93 -0.41 0.08 16 41 H 0.08 0.60 7.86 -51.93 -0.41 0.19 16 42 H 0.08 0.41 7.30 -51.93 -0.38 0.03 16 43 H 0.08 0.84 7.65 -51.93 -0.40 0.44 16 44 H 0.06 0.59 6.89 -51.93 -0.36 0.23 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.36 5.19 5.26 -39.29 -0.21 4.98 16 47 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.05 0.64 8.07 -51.93 -0.42 0.22 16 49 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.08 1.03 7.90 -51.93 -0.41 0.62 16 52 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 LS Contribution 417.97 15.07 6.30 6.30 Total: -1.00 -34.92 417.97 -7.93 -42.85 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -9.10 Total: 10.19 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 0.19 Total: 8.35 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: -0.40 Total: -55.89 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.20 Total: -26.45 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -34.92 -7.93 -42.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.084 kcal (2) G-P(sol) polarization free energy of solvation -34.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds