Wall clock time and date at job start Wed Apr 1 2020 01:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00049 * 2 1 4 4 C 1.52999 * 109.47273 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47760 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47394 * 179.97438 * 5 4 3 7 7 C 1.50707 * 109.46993 * 180.02562 * 6 5 4 8 8 O 1.21280 * 119.99658 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00034 * 180.02562 * 7 6 5 10 10 C 1.48146 * 127.83527 * 0.02562 * 9 7 6 11 11 C 1.54389 * 104.71947 * 219.63954 * 10 9 7 12 12 H 1.08997 * 110.34484 * 94.94604 * 11 10 9 13 13 C 1.52994 * 110.34346 * 217.20744 * 11 10 9 14 14 C 1.54289 * 104.96102 * 336.07694 * 11 10 9 15 15 H 1.08999 * 110.34342 * 118.97038 * 14 11 10 16 16 N 1.46901 * 110.34318 * 241.12958 * 14 11 10 17 17 C 1.46890 * 110.99958 * 204.99856 * 16 14 11 18 18 C 1.50703 * 109.47189 * 180.02562 * 17 16 14 19 19 O 1.21290 * 119.99702 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99856 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99925 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99991 * 359.97438 * 21 20 18 23 23 C 1.38950 * 120.00224 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99650 * 180.02562 * 23 21 20 25 25 Si 1.86799 * 119.99897 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47118 * 89.99827 * 25 23 21 27 27 H 1.48505 * 109.46958 * 209.99667 * 25 23 21 28 28 H 1.48495 * 109.47141 * 329.99652 * 25 23 21 29 29 C 1.48427 * 127.98094 * 180.10683 * 9 7 6 30 30 H 1.09001 * 109.47120 * 300.00042 * 1 2 3 31 31 H 1.09002 * 109.46927 * 59.99513 * 1 2 3 32 32 H 1.08994 * 109.47070 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47350 * 60.00619 * 3 2 1 34 34 H 1.09002 * 109.47719 * 300.00010 * 3 2 1 35 35 H 1.09010 * 109.46915 * 60.00099 * 4 3 2 36 36 H 1.08999 * 109.47678 * 300.00436 * 4 3 2 37 37 H 1.09006 * 109.46386 * 60.00087 * 5 4 3 38 38 H 1.08999 * 109.46840 * 300.00899 * 5 4 3 39 39 H 1.08996 * 109.46752 * 60.00619 * 6 5 4 40 40 H 1.08998 * 109.47172 * 299.99995 * 6 5 4 41 41 H 1.09002 * 110.40776 * 100.79701 * 10 9 7 42 42 H 1.09002 * 110.40863 * 338.48109 * 10 9 7 43 43 H 1.09001 * 109.47260 * 58.54481 * 13 11 10 44 44 H 1.09000 * 109.47306 * 178.54617 * 13 11 10 45 45 H 1.09004 * 109.46825 * 298.54469 * 13 11 10 46 46 H 1.00898 * 110.99741 * 328.95095 * 16 14 11 47 47 H 1.08998 * 109.47283 * 299.99784 * 17 16 14 48 48 H 1.08999 * 109.47630 * 59.99810 * 17 16 14 49 49 H 0.96994 * 120.00764 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99674 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.39413 * 21.58122 * 29 9 7 52 52 H 1.09000 * 110.39150 * 259.16906 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1579 2.5823 0.0013 6 6 5.6831 2.4614 0.0026 7 6 6.2961 3.8382 0.0039 8 8 5.5832 4.8193 0.0033 9 7 7.6365 3.9790 0.0046 10 6 8.6625 2.9104 0.0038 11 6 9.7633 3.4227 0.9575 12 1 9.6111 3.0243 1.9606 13 6 11.1461 3.0315 0.4326 14 6 9.6051 4.9575 0.9603 15 1 9.3771 5.3130 1.9652 16 7 10.8282 5.5978 0.4583 17 6 10.9576 6.9657 0.9778 18 6 12.2206 7.5892 0.4419 19 8 12.9421 6.9561 -0.2995 20 7 12.5487 8.8499 0.7873 21 6 13.6980 9.4170 0.3002 22 1 14.3406 8.8533 -0.3600 23 6 14.0361 10.7170 0.6559 24 7 15.1375 11.2606 0.1885 25 14 12.9252 11.6917 1.7983 26 1 13.3398 11.4633 3.2057 27 1 13.0334 13.1380 1.4789 28 1 11.5193 11.2489 1.6183 29 6 8.4226 5.2380 0.0080 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8908 37 1 3.8358 3.1229 0.8914 38 1 3.8365 3.1235 -0.8886 39 1 6.0054 1.9207 -0.8872 40 1 6.0039 1.9204 0.8928 41 1 9.0642 2.7699 -0.9997 42 1 8.2400 1.9776 0.3773 43 1 11.2877 3.4487 -0.5644 44 1 11.9126 3.4219 1.1020 45 1 11.2231 1.9452 0.3863 46 1 11.6431 5.0470 0.6831 47 1 10.0984 7.5572 0.6617 48 1 10.9991 6.9384 2.0667 49 1 11.9719 9.3561 1.3805 50 1 15.3737 12.1680 0.4371 51 1 7.8178 6.0625 0.3858 52 1 8.7869 5.4610 -0.9948 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281379795.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:11 Heat of formation + Delta-G solvation = -138.641920 kcal Electronic energy + Delta-G solvation = -29205.936546 eV Core-core repulsion = 25011.536412 eV Total energy + Delta-G solvation = -4194.400134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.26076 -40.30742 -39.29072 -38.86627 -36.22882 -35.69978 -35.60014 -33.77218 -33.20157 -31.34464 -29.86790 -28.24311 -27.28135 -27.16408 -25.71895 -24.81788 -23.60578 -22.10983 -21.32235 -20.47397 -20.33488 -20.09596 -18.23044 -17.66861 -17.39602 -17.23866 -17.02166 -16.99680 -16.70843 -16.56833 -16.27100 -15.75633 -15.67541 -15.41889 -15.06960 -14.88265 -14.64541 -14.42415 -14.16910 -13.80140 -13.61012 -13.53897 -13.48650 -13.10295 -13.03352 -12.91187 -12.75900 -12.58691 -12.42567 -12.42053 -12.33005 -12.05598 -11.97286 -11.87461 -11.74736 -11.65487 -11.58962 -11.51732 -10.89820 -10.62461 -10.42978 -10.25328 -9.80501 -9.36446 -8.41998 -6.02590 1.30018 1.33980 1.43209 1.62232 1.88684 1.94649 2.21883 2.71883 2.82971 3.14765 3.38609 3.43519 3.61097 3.81531 3.93123 3.97532 4.00570 4.13478 4.28080 4.30824 4.34541 4.39398 4.40137 4.43524 4.51589 4.52769 4.54316 4.54904 4.64631 4.71776 4.75074 4.81495 4.82024 4.84396 4.86258 4.95572 4.99088 5.05462 5.18268 5.22550 5.29048 5.39656 5.50298 5.53264 5.90147 6.03410 6.22052 6.39517 6.58833 6.59681 6.87324 7.13597 7.39124 7.94881 8.75533 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.022629 B = 0.001612 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.065422 B =17363.887344 C =18308.126015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.125 4.125 7 C 0.525 3.475 8 O -0.593 6.593 9 N -0.624 5.624 10 C 0.107 3.893 11 C -0.100 4.100 12 H 0.104 0.896 13 C -0.145 4.145 14 C 0.077 3.923 15 H 0.066 0.934 16 N -0.675 5.675 17 C 0.058 3.942 18 C 0.450 3.550 19 O -0.610 6.610 20 N -0.592 5.592 21 C -0.329 4.329 22 H 0.058 0.942 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.256 1.256 27 H -0.276 1.276 28 H -0.235 1.235 29 C 0.112 3.888 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.357 0.643 47 H 0.104 0.896 48 H 0.079 0.921 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.063 0.937 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.551 -23.993 6.041 36.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.022 4.022 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.164 4.164 7 C 0.317 3.683 8 O -0.474 6.474 9 N -0.357 5.357 10 C -0.015 4.015 11 C -0.119 4.119 12 H 0.122 0.878 13 C -0.202 4.202 14 C -0.033 4.033 15 H 0.084 0.916 16 N -0.313 5.313 17 C -0.075 4.075 18 C 0.238 3.762 19 O -0.495 6.495 20 N -0.233 5.233 21 C -0.458 4.458 22 H 0.076 0.924 23 C -0.211 4.211 24 N -0.574 5.574 25 Si 0.782 3.218 26 H -0.180 1.180 27 H -0.201 1.201 28 H -0.158 1.158 29 C -0.012 4.012 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.135 0.865 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.102 0.898 46 H 0.182 0.818 47 H 0.122 0.878 48 H 0.096 0.904 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.081 0.919 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.575 -23.732 4.935 35.970 hybrid contribution 0.188 1.576 1.043 1.899 sum -26.387 -22.157 5.978 34.971 Atomic orbital electron populations 1.22912 0.79735 1.03782 1.00706 1.87815 1.21291 1.28952 1.95596 1.22640 0.94692 0.84208 1.00631 1.21437 0.92541 0.96670 1.04047 1.21164 0.93309 0.96384 1.02682 1.21664 0.95885 0.92009 1.06835 1.21135 0.79828 0.92824 0.74533 1.90696 1.60985 1.43043 1.52666 1.49141 1.04858 1.09351 1.72397 1.22697 0.87045 0.91202 1.00511 1.22262 0.96025 0.92645 1.01000 0.87821 1.21717 0.94614 1.02506 1.01410 1.22425 0.89364 0.95301 0.96256 0.91599 1.60256 1.05888 1.01757 1.63427 1.21706 0.95084 0.92012 0.98679 1.20897 0.89033 0.82094 0.84158 1.90538 1.55249 1.63158 1.40531 1.42050 1.22216 1.13680 1.45393 1.19026 1.00001 0.98414 1.28364 0.92431 1.26063 0.98273 0.97242 0.99528 1.69799 1.25674 1.16162 1.45754 0.85400 0.79514 0.78120 0.78726 1.18000 1.20077 1.15823 1.22341 0.91218 0.87412 1.00212 0.93361 0.93443 0.88497 0.92961 0.93105 0.90424 0.90207 0.92141 0.92425 0.86534 0.86061 0.90191 0.86686 0.92595 0.92854 0.89815 0.81750 0.87772 0.90365 0.77583 0.91153 0.91873 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.42 -6.32 10.70 -148.98 -1.59 -7.92 16 3 C 0.05 0.68 5.94 71.98 0.43 1.11 16 4 C -0.11 -1.12 5.58 30.59 0.17 -0.95 16 5 C -0.10 -1.26 4.50 30.59 0.14 -1.12 16 6 C -0.12 -1.36 4.68 29.85 0.14 -1.22 16 7 C 0.53 10.84 7.92 87.66 0.69 11.54 16 8 O -0.59 -17.94 16.27 -3.03 -0.05 -17.99 16 9 N -0.62 -11.70 3.33 -807.18 -2.69 -14.39 16 10 C 0.11 1.27 6.45 86.53 0.56 1.83 16 11 C -0.10 -1.37 3.66 -9.89 -0.04 -1.40 16 12 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.14 -2.21 7.75 71.98 0.56 -1.65 16 14 C 0.08 1.56 3.39 45.83 0.16 1.71 16 15 H 0.07 1.24 7.82 -2.39 -0.02 1.22 16 16 N -0.68 -18.51 5.27 -490.89 -2.59 -21.09 16 17 C 0.06 1.74 6.02 85.56 0.51 2.26 16 18 C 0.45 20.09 7.82 87.66 0.69 20.78 16 19 O -0.61 -33.14 15.78 -3.06 -0.05 -33.19 16 20 N -0.59 -27.91 5.09 -306.98 -1.56 -29.47 16 21 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 22 H 0.06 4.00 7.39 -2.91 -0.02 3.98 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.93 -56.31 13.96 21.66 0.30 -56.00 16 25 Si 0.96 39.09 27.74 68.60 1.90 40.99 16 26 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 27 H -0.28 -11.16 7.11 99.48 0.71 -10.46 16 28 H -0.23 -8.17 6.52 99.48 0.65 -7.52 16 29 C 0.11 2.59 6.76 86.48 0.58 3.18 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.59 16 35 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 38 H 0.06 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.12 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.12 0.71 7.95 -2.39 -0.02 0.69 16 41 H 0.08 0.98 7.86 -2.39 -0.02 0.96 16 42 H 0.11 0.57 7.30 -2.39 -0.02 0.55 16 43 H 0.05 1.14 7.65 -2.39 -0.02 1.12 16 44 H 0.05 0.93 6.89 -2.39 -0.02 0.91 16 45 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.36 10.08 5.26 -89.70 -0.47 9.61 16 47 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 48 H 0.08 1.91 8.07 -2.39 -0.02 1.89 16 49 H 0.39 15.31 5.76 -92.71 -0.53 14.78 16 50 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 51 H 0.06 1.64 7.90 -2.38 -0.02 1.62 16 52 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 Total: -1.00 -82.88 417.97 0.68 -82.20 By element: Atomic # 1 Polarization: 38.11 SS G_CDS: -0.15 Total: 37.96 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 7.16 Total: 18.90 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.53 Total: -120.96 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -1.69 Total: -59.10 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.90 Total: 40.99 kcal Total: -82.88 0.68 -82.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379795.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.443 kcal (2) G-P(sol) polarization free energy of solvation -82.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds