Wall clock time and date at job start Wed Apr 1 2020 01:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47128 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46953 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00452 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99981 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64893 * 180.02562 * 9 7 6 11 11 C 1.54327 * 107.27203 * 181.02382 * 10 9 7 12 12 H 1.08996 * 110.72059 * 263.82990 * 11 10 9 13 13 N 1.46899 * 110.71981 * 140.73185 * 11 10 9 14 14 C 1.46902 * 110.99782 * 86.45260 * 13 11 10 15 15 C 1.50703 * 109.47149 * 179.97438 * 14 13 11 16 16 O 1.21298 * 119.99565 * 0.02562 * 15 14 13 17 17 N 1.34772 * 120.00058 * 180.02562 * 15 14 13 18 18 C 1.37104 * 120.00131 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99574 * 0.02562 * 18 17 15 20 20 C 1.38948 * 120.00013 * 180.02562 * 18 17 15 21 21 N 1.31410 * 120.00282 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99855 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46857 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46953 * 120.00168 * 22 20 18 25 25 H 1.48496 * 109.47105 * 239.99895 * 22 20 18 26 26 C 1.55157 * 102.93936 * 22.19427 * 11 10 9 27 27 H 1.09000 * 111.00304 * 82.57458 * 26 11 10 28 28 C 1.52999 * 111.00255 * 206.38256 * 26 11 10 29 29 C 1.47422 * 125.64603 * 359.69792 * 9 7 6 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 34 34 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 35 35 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 36 36 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 37 37 H 1.09005 * 109.47059 * 299.99976 * 5 4 3 38 38 H 1.08999 * 109.46874 * 59.99868 * 5 4 3 39 39 H 1.08997 * 109.47286 * 300.00215 * 6 5 4 40 40 H 1.09008 * 109.47201 * 60.00434 * 6 5 4 41 41 H 1.09001 * 109.88434 * 300.44468 * 10 9 7 42 42 H 1.09000 * 109.88428 * 61.60683 * 10 9 7 43 43 H 1.00900 * 111.00013 * 210.40754 * 13 11 10 44 44 H 1.08999 * 109.47420 * 300.00174 * 14 13 11 45 45 H 1.09008 * 109.46736 * 60.00384 * 14 13 11 46 46 H 0.97001 * 120.00036 * 0.02562 * 17 15 14 47 47 H 0.97000 * 120.00077 * 179.97438 * 21 20 18 48 48 H 1.09003 * 109.46654 * 60.00355 * 28 26 11 49 49 H 1.08996 * 109.46957 * 179.97438 * 28 26 11 50 50 H 1.08998 * 109.47376 * 300.00455 * 28 26 11 51 51 H 1.08999 * 110.36573 * 274.73939 * 29 9 7 52 52 H 1.09000 * 110.37015 * 37.06873 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6830 2.4616 0.0013 7 6 6.2959 3.8383 0.0000 8 8 5.5830 4.8196 -0.0013 9 7 7.6363 3.9792 0.0014 10 6 8.3636 5.2570 0.0009 11 6 9.8708 4.9263 -0.0234 12 1 10.2855 4.9428 0.9844 13 7 10.5939 5.8608 -0.8963 14 6 10.9811 7.0734 -0.1632 15 6 11.7195 8.0058 -1.0888 16 8 11.9044 7.6911 -2.2456 17 7 12.1743 9.1891 -0.6313 18 6 12.8455 10.0375 -1.4735 19 1 13.0094 9.7577 -2.5037 20 6 13.3149 11.2572 -1.0016 21 7 13.1159 11.5974 0.2520 22 14 14.2288 12.4135 -2.1493 23 1 14.3198 11.8013 -3.4992 24 1 13.4969 13.7025 -2.2391 25 1 15.5956 12.6562 -1.6221 26 6 9.9017 3.4888 -0.6065 27 1 9.8466 3.5074 -1.6949 28 6 11.1462 2.7330 -0.1362 29 6 8.6160 2.8776 0.0104 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8464 0.8899 35 1 3.8567 0.6439 0.8908 36 1 3.8575 0.6436 -0.8892 37 1 3.8364 3.1228 -0.8905 38 1 3.8358 3.1238 0.8895 39 1 6.0039 1.9214 0.8919 40 1 6.0053 1.9200 -0.8881 41 1 8.0965 5.8352 -0.8837 42 1 8.1223 5.8212 0.9018 43 1 11.3989 5.4173 -1.3127 44 1 10.0878 7.5696 0.2162 45 1 11.6283 6.8024 0.6711 46 1 12.0267 9.4405 0.2939 47 1 13.4438 12.4487 0.5815 48 1 11.1426 2.6688 0.9519 49 1 11.1425 1.7284 -0.5591 50 1 12.0396 3.2632 -0.4660 51 1 8.8032 2.5449 1.0313 52 1 8.2599 2.0482 -0.6006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281379797.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:17 Heat of formation + Delta-G solvation = -156.657526 kcal Electronic energy + Delta-G solvation = -29032.366889 eV Core-core repulsion = 24837.185539 eV Total energy + Delta-G solvation = -4195.181350 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.27734 -40.18399 -39.19974 -38.84500 -36.22587 -35.70910 -35.56884 -33.49514 -33.21023 -31.35522 -29.86710 -28.08578 -27.37886 -27.17408 -25.98240 -24.71452 -22.91051 -22.12871 -21.38425 -20.96791 -20.21772 -19.86999 -18.27111 -17.75477 -17.53257 -17.29514 -17.19045 -16.71893 -16.61961 -16.36169 -16.14284 -15.83099 -15.62876 -15.25372 -15.23148 -14.85526 -14.66531 -14.14180 -14.02150 -13.78545 -13.57725 -13.50191 -13.46971 -13.30987 -13.21108 -12.93663 -12.74175 -12.61630 -12.42509 -12.41776 -12.33873 -12.12655 -12.09526 -11.96990 -11.87835 -11.60055 -11.52637 -11.47664 -10.91280 -10.62723 -10.36748 -10.02924 -9.69139 -9.43272 -8.47982 -5.96858 1.35767 1.41265 1.55478 1.62057 1.90833 2.03135 2.28364 2.80485 2.90314 3.19387 3.32869 3.49979 3.51225 3.80111 3.94442 3.97003 4.08208 4.18330 4.27451 4.29446 4.33899 4.34738 4.40638 4.46008 4.52264 4.54305 4.54999 4.55613 4.60136 4.73199 4.74492 4.76827 4.82687 4.85772 4.89600 4.94067 4.99005 5.03096 5.22281 5.26874 5.28902 5.39353 5.40074 5.43694 5.87278 6.07631 6.21553 6.35844 6.53291 6.58290 7.11217 7.14178 7.54404 8.09383 8.69620 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.001551 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.573292 B =18050.555290 C =18917.193265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.108 4.108 5 C -0.098 4.098 6 C -0.123 4.123 7 C 0.516 3.484 8 O -0.595 6.595 9 N -0.619 5.619 10 C 0.114 3.886 11 C 0.083 3.917 12 H 0.078 0.922 13 N -0.672 5.672 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.623 6.623 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.079 0.921 20 C -0.012 4.012 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.269 1.269 26 C -0.100 4.100 27 H 0.084 0.916 28 C -0.139 4.139 29 C 0.106 3.894 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.353 0.647 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.396 0.604 47 H 0.278 0.722 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.050 0.950 51 H 0.097 0.903 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.857 -26.781 6.004 31.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.162 4.162 7 C 0.307 3.693 8 O -0.475 6.475 9 N -0.352 5.352 10 C -0.011 4.011 11 C -0.028 4.028 12 H 0.096 0.904 13 N -0.306 5.306 14 C -0.067 4.067 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.097 0.903 20 C -0.212 4.212 21 N -0.561 5.561 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.198 1.198 25 H -0.194 1.194 26 C -0.120 4.120 27 H 0.102 0.898 28 C -0.196 4.196 29 C -0.016 4.016 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.141 0.859 40 H 0.136 0.864 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.174 0.826 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.100 0.900 50 H 0.069 0.931 51 H 0.115 0.885 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.588 -26.203 5.087 31.426 hybrid contribution 0.785 1.496 0.387 1.733 sum -15.802 -24.707 5.474 29.835 Atomic orbital electron populations 1.22916 0.79738 1.03805 1.00688 1.87814 1.21288 1.28885 1.95595 1.22637 0.94732 0.84225 1.00593 1.21429 0.92494 0.96538 1.04124 1.21171 0.93421 0.96479 1.02586 1.21665 0.95834 0.91797 1.06912 1.21276 0.80225 0.92954 0.74855 1.90703 1.61273 1.43158 1.52412 1.48592 1.05391 1.08583 1.72619 1.21856 0.91869 0.86576 1.00764 1.22633 0.91894 0.92175 0.96075 0.90427 1.59915 1.31091 1.06101 1.33519 1.21582 0.99496 0.91482 0.94162 1.20838 0.83703 0.83709 0.89238 1.90493 1.62993 1.76772 1.20648 1.41935 1.50055 1.15868 1.13102 1.19715 1.32903 0.98802 0.94979 0.90296 1.26034 0.98329 0.98734 0.98060 1.69677 1.46925 1.24207 1.15293 0.84875 0.78005 0.77579 0.77905 1.19756 1.19782 1.19394 1.22558 0.96091 0.92253 1.01050 0.89752 1.21719 0.95016 1.00709 1.02193 1.22733 0.86459 0.89469 1.02909 0.93370 0.93491 0.88423 0.93194 0.92989 0.90070 0.90346 0.92601 0.92238 0.85924 0.86374 0.93434 0.92586 0.82578 0.88685 0.90846 0.76997 0.91292 0.91028 0.90002 0.93067 0.88481 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.66 10.70 -148.98 -1.59 -8.25 16 3 C 0.05 0.74 5.94 71.98 0.43 1.17 16 4 C -0.11 -1.23 5.58 30.59 0.17 -1.06 16 5 C -0.10 -1.43 4.50 30.59 0.14 -1.30 16 6 C -0.12 -1.52 4.70 29.85 0.14 -1.38 16 7 C 0.52 11.86 7.85 87.66 0.69 12.55 16 8 O -0.59 -19.89 16.31 -3.05 -0.05 -19.94 16 9 N -0.62 -12.81 3.32 -811.30 -2.70 -15.51 16 10 C 0.11 2.97 6.55 86.73 0.57 3.53 16 11 C 0.08 1.81 2.70 46.11 0.12 1.93 16 12 H 0.08 1.48 7.79 -2.39 -0.02 1.46 16 13 N -0.67 -20.47 5.92 -489.43 -2.90 -23.37 16 14 C 0.07 2.22 6.02 85.56 0.52 2.73 16 15 C 0.44 20.92 7.82 87.66 0.69 21.60 16 16 O -0.62 -34.62 15.78 -3.08 -0.05 -34.67 16 17 N -0.57 -29.62 5.29 -306.98 -1.62 -31.24 16 18 C -0.33 -19.17 9.68 84.04 0.81 -18.36 16 19 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 20 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 21 N -0.92 -49.98 13.05 21.66 0.28 -49.69 16 22 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 C -0.10 -1.54 3.10 -9.32 -0.03 -1.57 16 27 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 28 C -0.14 -1.53 9.31 71.98 0.67 -0.86 16 29 C 0.11 1.23 6.17 86.94 0.54 1.77 16 30 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.06 1.01 8.10 -2.38 -0.02 0.99 16 38 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.12 0.95 7.85 -2.38 -0.02 0.93 16 41 H 0.05 1.58 8.03 -2.39 -0.02 1.57 16 42 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.35 10.89 8.20 -89.69 -0.74 10.16 16 44 H 0.10 3.10 8.13 -2.39 -0.02 3.08 16 45 H 0.07 2.11 8.09 -2.38 -0.02 2.09 16 46 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 47 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 48 H 0.07 0.63 8.07 -2.39 -0.02 0.61 16 49 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.10 0.73 7.99 -2.39 -0.02 0.71 16 52 H 0.11 0.70 7.48 -2.39 -0.02 0.68 16 Total: -1.00 -78.09 426.58 0.00 -78.09 By element: Atomic # 1 Polarization: 37.78 SS G_CDS: -0.56 Total: 37.22 kcal Atomic # 6 Polarization: 14.93 SS G_CDS: 7.16 Total: 22.10 kcal Atomic # 7 Polarization: -112.88 SS G_CDS: -6.94 Total: -119.82 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -1.69 Total: -62.87 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -78.09 0.00 -78.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281379797.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.570 kcal (2) G-P(sol) polarization free energy of solvation -78.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds