Wall clock time and date at job start Wed Apr 1 2020 01:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99626 * 2 1 4 4 H 1.09003 * 109.47617 * 10.02680 * 3 2 1 5 5 C 1.50703 * 109.47024 * 130.02498 * 3 2 1 6 6 O 1.21282 * 119.99631 * 3.14475 * 5 3 2 7 7 N 1.34776 * 120.00345 * 183.14484 * 5 3 2 8 8 C 1.46499 * 120.00195 * 174.73560 * 7 5 3 9 9 H 1.08993 * 109.46961 * 35.00174 * 8 7 5 10 10 C 1.53004 * 109.47094 * 274.99944 * 8 7 5 11 11 C 1.52998 * 109.46884 * 155.00230 * 8 7 5 12 12 C 1.53517 * 114.17102 * 180.02562 * 11 8 7 13 13 N 1.47474 * 87.93487 * 139.66778 * 12 11 8 14 14 C 1.46899 * 110.99818 * 221.29898 * 13 12 11 15 15 C 1.50708 * 109.46974 * 170.00361 * 14 13 12 16 16 O 1.21286 * 119.99838 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99745 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99702 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00275 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99979 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99841 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47140 * 59.99861 * 22 20 18 24 24 H 1.48497 * 109.46702 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46987 * 299.99650 * 22 20 18 26 26 C 1.47483 * 87.83853 * 332.98970 * 13 12 11 27 27 C 1.52993 * 109.47333 * 250.02271 * 3 2 1 28 28 C 1.53005 * 109.47392 * 302.53043 * 27 3 2 29 29 C 1.53003 * 109.46950 * 62.52670 * 27 3 2 30 30 H 1.09003 * 109.46905 * 184.64631 * 1 2 3 31 31 H 1.08998 * 109.47383 * 304.65083 * 1 2 3 32 32 H 1.09002 * 109.47146 * 64.65071 * 1 2 3 33 33 H 0.96999 * 119.99449 * 354.73695 * 7 5 3 34 34 H 1.08998 * 109.46957 * 299.99994 * 10 8 7 35 35 H 1.09001 * 109.47165 * 60.00119 * 10 8 7 36 36 H 1.08996 * 109.46664 * 180.02562 * 10 8 7 37 37 H 1.08995 * 113.25843 * 47.04959 * 11 8 7 38 38 H 1.08999 * 113.47504 * 24.89928 * 12 11 8 39 39 H 1.08998 * 113.47162 * 254.43831 * 12 11 8 40 40 H 1.09004 * 109.46875 * 289.99508 * 14 13 12 41 41 H 1.08993 * 109.47669 * 50.00121 * 14 13 12 42 42 H 0.96996 * 120.00810 * 359.97438 * 17 15 14 43 43 H 0.97007 * 120.00194 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.47960 * 141.77437 * 26 13 12 45 45 H 1.09000 * 113.47567 * 272.24685 * 26 13 12 46 46 H 1.08997 * 109.47575 * 182.52754 * 27 3 2 47 47 H 1.08995 * 109.46919 * 64.22078 * 28 27 3 48 48 H 1.09001 * 109.47137 * 184.22535 * 28 27 3 49 49 H 1.08997 * 109.46609 * 304.22467 * 28 27 3 50 50 H 1.09000 * 109.47415 * 57.98987 * 29 27 3 51 51 H 1.09001 * 109.47196 * 177.99198 * 29 27 3 52 52 H 1.08994 * 109.47353 * 297.98992 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2334 2.0491 0.1789 5 6 3.0492 1.3928 1.0880 6 8 3.3109 0.4152 1.7564 7 7 3.6877 2.5572 1.3183 8 6 4.6125 2.6744 2.4485 9 1 5.1325 1.7274 2.5922 10 6 3.8283 3.0231 3.7151 11 6 5.6326 3.7777 2.1603 12 6 6.6597 3.9925 3.2809 13 7 7.6857 4.1619 2.2352 14 6 8.9333 3.4813 2.6066 15 6 9.8675 3.4641 1.4241 16 8 9.5270 3.9687 0.3750 17 7 11.0806 2.8870 1.5320 18 6 11.9301 2.8709 0.4561 19 1 11.6271 3.3202 -0.4780 20 6 13.1812 2.2764 0.5675 21 7 13.5501 1.7302 1.7042 22 14 14.3384 2.2539 -0.8987 23 1 14.6392 3.6476 -1.3135 24 1 15.6000 1.5666 -0.5229 25 1 13.6962 1.5298 -2.0251 26 6 6.8576 3.3085 1.3628 27 6 2.6678 1.5710 -1.3556 28 6 3.7146 0.4907 -1.6351 29 6 1.6022 1.5447 -2.4533 30 1 -0.3633 -1.0243 0.0832 31 1 -0.3634 0.5843 0.8454 32 1 -0.3633 0.4400 -0.9287 33 1 3.5349 3.3175 0.7357 34 1 3.3083 3.9702 3.5713 35 1 3.1015 2.2371 3.9204 36 1 4.5165 3.1108 4.5558 37 1 5.1793 4.6964 1.7879 38 1 6.8148 3.1107 3.9025 39 1 6.4821 4.8952 3.8654 40 1 9.4044 4.0122 3.4339 41 1 8.7126 2.4580 2.9102 42 1 11.3527 2.4831 2.3708 43 1 14.4236 1.3155 1.7822 44 1 6.8478 3.6315 0.3219 45 1 7.0655 2.2441 1.4726 46 1 3.1497 2.5486 -1.3405 47 1 3.2222 -0.4776 -1.7248 48 1 4.2352 0.7211 -2.5646 49 1 4.4318 0.4591 -0.8150 50 1 0.8374 2.2902 -2.2353 51 1 2.0649 1.7691 -3.4143 52 1 1.1450 0.5560 -2.4922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282735488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:25 Heat of formation + Delta-G solvation = -88.450697 kcal Electronic energy + Delta-G solvation = -30684.418599 eV Core-core repulsion = 26492.194919 eV Total energy + Delta-G solvation = -4192.223680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78552 -40.01407 -38.15931 -37.65428 -35.42447 -34.93601 -33.87648 -31.68089 -31.18811 -29.54488 -28.44477 -27.35771 -26.40340 -25.87941 -25.43670 -24.10980 -22.20639 -21.20271 -20.37992 -19.58104 -19.18814 -17.92930 -17.56750 -17.13620 -16.61041 -16.08665 -15.83972 -15.35459 -15.25393 -14.94404 -14.63062 -14.60187 -14.29049 -14.12663 -13.83579 -13.69458 -13.55144 -13.24263 -13.05789 -12.70929 -12.64528 -12.45759 -12.35187 -12.25146 -11.97024 -11.78709 -11.72402 -11.54228 -11.46247 -11.33743 -11.07140 -11.05257 -10.92403 -10.68930 -10.43952 -10.42789 -10.35253 -10.19744 -9.52799 -9.47962 -9.25810 -8.69561 -8.23495 -7.94975 -6.40067 -3.80924 2.43168 2.68363 3.21158 3.26678 3.31065 3.59618 3.91034 4.03767 4.20340 4.29377 4.33901 4.42754 4.52061 4.63448 4.76427 4.88457 4.95252 4.97657 5.05473 5.07043 5.18832 5.21609 5.24563 5.27045 5.32343 5.40834 5.43362 5.48823 5.52537 5.56280 5.68068 5.70082 5.72584 5.77444 5.80446 5.82860 5.94863 5.96696 6.09065 6.18175 6.21484 6.27488 6.37304 6.59808 6.68875 7.22307 7.31805 7.56290 8.06796 8.06940 8.62945 9.19287 9.55647 10.07439 10.77671 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002323 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.373863 B =12048.751856 C =13348.241692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.076 3.924 4 H 0.087 0.913 5 C 0.509 3.491 6 O -0.519 6.519 7 N -0.722 5.722 8 C 0.153 3.847 9 H 0.090 0.910 10 C -0.160 4.160 11 C -0.128 4.128 12 C 0.006 3.994 13 N -0.444 5.444 14 C 0.009 3.991 15 C 0.444 3.556 16 O -0.580 6.580 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C 0.021 3.979 27 C -0.105 4.105 28 C -0.145 4.145 29 C -0.147 4.147 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.400 0.600 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.062 0.938 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.870 1.097 0.500 26.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.268 6.268 3 C 0.014 3.986 4 H 0.105 0.895 5 C 0.294 3.706 6 O -0.394 6.394 7 N -0.376 5.376 8 C 0.048 3.952 9 H 0.108 0.892 10 C -0.219 4.219 11 C -0.148 4.148 12 C -0.124 4.124 13 N -0.166 5.166 14 C -0.124 4.124 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.108 4.108 27 C -0.124 4.124 28 C -0.202 4.202 29 C -0.204 4.204 30 H 0.107 0.893 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.360 1.091 0.133 26.383 hybrid contribution 0.509 -0.524 -0.052 0.733 sum -25.851 0.567 0.081 25.857 Atomic orbital electron populations 1.22963 0.80912 1.03213 0.99935 1.88044 1.19391 1.24854 1.94557 1.22117 0.95204 0.87241 0.93993 0.89529 1.20672 0.82415 0.83029 0.84473 1.90726 1.63914 1.35613 1.49119 1.46026 1.45752 1.14027 1.31782 1.20991 0.89396 0.99333 0.85485 0.89204 1.22142 1.00779 1.01669 0.97295 1.23082 0.94004 0.98748 0.98915 1.23845 0.91826 1.01657 0.95077 1.68822 0.99760 1.40838 1.07146 1.22495 0.93268 0.97872 0.98720 1.19659 0.83533 0.84481 0.89369 1.90512 1.76092 1.49723 1.30006 1.41863 1.13233 1.50648 1.14384 1.19639 0.95191 1.34973 0.93059 0.88019 1.25263 0.97900 0.96718 0.98073 1.69604 1.21912 1.38006 1.24816 0.85919 0.78909 0.78581 0.80819 1.19890 1.20965 1.19914 1.23717 0.90463 0.96519 1.00080 1.21507 0.97243 1.00533 0.93070 1.21749 0.97922 0.98726 1.01805 1.21852 0.98150 1.02148 0.98296 0.89266 0.93997 0.93705 0.76610 0.92324 0.92385 0.91250 0.87611 0.91263 0.89517 0.89087 0.92677 0.77493 0.91820 0.89186 0.91605 0.89804 0.91658 0.92304 0.92480 0.92833 0.91877 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.45 101.05 1.06 1.23 16 2 O -0.35 -3.71 8.71 -55.12 -0.48 -4.19 16 3 C 0.08 0.67 2.37 -27.89 -0.07 0.61 16 4 H 0.09 0.53 7.59 -51.93 -0.39 0.14 16 5 C 0.51 5.86 5.95 -10.98 -0.07 5.79 16 6 O -0.52 -8.35 16.13 -14.34 -0.23 -8.58 16 7 N -0.72 -6.65 5.01 -53.81 -0.27 -6.92 16 8 C 0.15 1.56 2.51 -67.93 -0.17 1.39 16 9 H 0.09 1.15 7.26 -51.93 -0.38 0.78 16 10 C -0.16 -1.40 9.29 37.16 0.35 -1.06 16 11 C -0.13 -1.38 3.64 -90.08 -0.33 -1.70 16 12 C 0.01 0.07 6.36 -7.54 -0.05 0.02 16 13 N -0.44 -7.32 6.06 -246.07 -1.49 -8.81 16 14 C 0.01 0.15 5.31 -4.97 -0.03 0.13 16 15 C 0.44 10.73 7.62 -10.98 -0.08 10.64 16 16 O -0.58 -15.93 15.34 5.55 0.09 -15.85 16 17 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 18 C -0.30 -8.47 9.68 -14.93 -0.14 -8.62 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 26 C 0.02 0.32 6.28 -7.54 -0.05 0.27 16 27 C -0.10 -0.83 2.73 -90.62 -0.25 -1.07 16 28 C -0.14 -1.50 8.82 37.16 0.33 -1.17 16 29 C -0.15 -0.93 8.44 37.16 0.31 -0.61 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.04 0.22 7.00 -51.93 -0.36 -0.14 16 33 H 0.40 2.65 8.04 -40.82 -0.33 2.32 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.56 7.48 -51.93 -0.39 0.17 16 37 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 0.91 7.56 -51.93 -0.39 0.52 16 42 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 43 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.09 1.52 8.13 -51.93 -0.42 1.10 16 45 H 0.07 1.05 7.49 -51.93 -0.39 0.67 16 46 H 0.08 0.56 7.57 -51.93 -0.39 0.17 16 47 H 0.06 0.71 7.75 -51.93 -0.40 0.31 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.71 7.16 -51.93 -0.37 0.34 16 50 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.06 0.42 7.03 -51.93 -0.36 0.06 16 LS Contribution 417.94 15.07 6.30 6.30 Total: -1.00 -35.27 417.94 -8.77 -44.04 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -9.05 Total: 10.16 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.72 Total: 6.35 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: -1.10 Total: -54.56 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.63 Total: -28.62 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -35.27 -8.77 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282735488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.407 kcal (2) G-P(sol) polarization free energy of solvation -35.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds