Wall clock time and date at job start Wed Apr 1 2020 01:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99626 * 2 1 4 4 H 1.09003 * 109.47617 * 10.02680 * 3 2 1 5 5 C 1.50703 * 109.47024 * 130.02498 * 3 2 1 6 6 O 1.21282 * 119.99631 * 3.14475 * 5 3 2 7 7 N 1.34776 * 120.00345 * 183.14484 * 5 3 2 8 8 C 1.46499 * 120.00195 * 174.73560 * 7 5 3 9 9 H 1.08993 * 109.46961 * 35.00174 * 8 7 5 10 10 C 1.53004 * 109.47094 * 274.99944 * 8 7 5 11 11 C 1.52998 * 109.46884 * 155.00230 * 8 7 5 12 12 C 1.53517 * 114.17102 * 180.02562 * 11 8 7 13 13 N 1.47474 * 87.93487 * 139.66778 * 12 11 8 14 14 C 1.46899 * 110.99818 * 221.29898 * 13 12 11 15 15 C 1.50708 * 109.46974 * 170.00361 * 14 13 12 16 16 O 1.21286 * 119.99838 * 359.97438 * 15 14 13 17 17 N 1.34772 * 119.99745 * 180.02562 * 15 14 13 18 18 C 1.37098 * 119.99702 * 179.97438 * 17 15 14 19 19 H 1.07994 * 120.00275 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99979 * 179.97438 * 18 17 15 21 21 N 1.31406 * 119.99841 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99946 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47140 * 59.99861 * 22 20 18 24 24 H 1.48497 * 109.46702 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.46987 * 299.99650 * 22 20 18 26 26 C 1.47483 * 87.83853 * 332.98970 * 13 12 11 27 27 C 1.52993 * 109.47333 * 250.02271 * 3 2 1 28 28 C 1.53005 * 109.47392 * 302.53043 * 27 3 2 29 29 C 1.53003 * 109.46950 * 62.52670 * 27 3 2 30 30 H 1.09003 * 109.46905 * 184.64631 * 1 2 3 31 31 H 1.08998 * 109.47383 * 304.65083 * 1 2 3 32 32 H 1.09002 * 109.47146 * 64.65071 * 1 2 3 33 33 H 0.96999 * 119.99449 * 354.73695 * 7 5 3 34 34 H 1.08998 * 109.46957 * 299.99994 * 10 8 7 35 35 H 1.09001 * 109.47165 * 60.00119 * 10 8 7 36 36 H 1.08996 * 109.46664 * 180.02562 * 10 8 7 37 37 H 1.08995 * 113.25843 * 47.04959 * 11 8 7 38 38 H 1.08999 * 113.47504 * 24.89928 * 12 11 8 39 39 H 1.08998 * 113.47162 * 254.43831 * 12 11 8 40 40 H 1.09004 * 109.46875 * 289.99508 * 14 13 12 41 41 H 1.08993 * 109.47669 * 50.00121 * 14 13 12 42 42 H 0.96996 * 120.00810 * 359.97438 * 17 15 14 43 43 H 0.97007 * 120.00194 * 180.02562 * 21 20 18 44 44 H 1.08995 * 113.47960 * 141.77437 * 26 13 12 45 45 H 1.09000 * 113.47567 * 272.24685 * 26 13 12 46 46 H 1.08997 * 109.47575 * 182.52754 * 27 3 2 47 47 H 1.08995 * 109.46919 * 64.22078 * 28 27 3 48 48 H 1.09001 * 109.47137 * 184.22535 * 28 27 3 49 49 H 1.08997 * 109.46609 * 304.22467 * 28 27 3 50 50 H 1.09000 * 109.47415 * 57.98987 * 29 27 3 51 51 H 1.09001 * 109.47196 * 177.99198 * 29 27 3 52 52 H 1.08994 * 109.47353 * 297.98992 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2334 2.0491 0.1789 5 6 3.0492 1.3928 1.0880 6 8 3.3109 0.4152 1.7564 7 7 3.6877 2.5572 1.3183 8 6 4.6125 2.6744 2.4485 9 1 5.1325 1.7274 2.5922 10 6 3.8283 3.0231 3.7151 11 6 5.6326 3.7777 2.1603 12 6 6.6597 3.9925 3.2809 13 7 7.6857 4.1619 2.2352 14 6 8.9333 3.4813 2.6066 15 6 9.8675 3.4641 1.4241 16 8 9.5270 3.9687 0.3750 17 7 11.0806 2.8870 1.5320 18 6 11.9301 2.8709 0.4561 19 1 11.6271 3.3202 -0.4780 20 6 13.1812 2.2764 0.5675 21 7 13.5501 1.7302 1.7042 22 14 14.3384 2.2539 -0.8987 23 1 14.6392 3.6476 -1.3135 24 1 15.6000 1.5666 -0.5229 25 1 13.6962 1.5298 -2.0251 26 6 6.8576 3.3085 1.3628 27 6 2.6678 1.5710 -1.3556 28 6 3.7146 0.4907 -1.6351 29 6 1.6022 1.5447 -2.4533 30 1 -0.3633 -1.0243 0.0832 31 1 -0.3634 0.5843 0.8454 32 1 -0.3633 0.4400 -0.9287 33 1 3.5349 3.3175 0.7357 34 1 3.3083 3.9702 3.5713 35 1 3.1015 2.2371 3.9204 36 1 4.5165 3.1108 4.5558 37 1 5.1793 4.6964 1.7879 38 1 6.8148 3.1107 3.9025 39 1 6.4821 4.8952 3.8654 40 1 9.4044 4.0122 3.4339 41 1 8.7126 2.4580 2.9102 42 1 11.3527 2.4831 2.3708 43 1 14.4236 1.3155 1.7822 44 1 6.8478 3.6315 0.3219 45 1 7.0655 2.2441 1.4726 46 1 3.1497 2.5486 -1.3405 47 1 3.2222 -0.4776 -1.7248 48 1 4.2352 0.7211 -2.5646 49 1 4.4318 0.4591 -0.8150 50 1 0.8374 2.2902 -2.2353 51 1 2.0649 1.7691 -3.4143 52 1 1.1450 0.5560 -2.4922 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282735488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:24 Heat of formation + Delta-G solvation = -116.290311 kcal Electronic energy + Delta-G solvation = -30685.625815 eV Core-core repulsion = 26492.194919 eV Total energy + Delta-G solvation = -4193.430896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80432 -41.03291 -39.68686 -38.76838 -36.42619 -35.93758 -35.61295 -33.35368 -32.60544 -30.74964 -29.06045 -28.09224 -27.60342 -26.92177 -26.56626 -25.58081 -23.26871 -22.03690 -21.20789 -21.01558 -20.51238 -19.92164 -18.48833 -17.87908 -17.83484 -17.42216 -16.73552 -16.65171 -16.41482 -16.35674 -15.87541 -15.68258 -15.67641 -15.17473 -14.96236 -14.85252 -14.50158 -14.26827 -13.98495 -13.97411 -13.61520 -13.54243 -13.38855 -13.29021 -13.09346 -12.98589 -12.87317 -12.72887 -12.49904 -12.46615 -12.22328 -12.15474 -12.05294 -11.85261 -11.83003 -11.69319 -11.55243 -11.45493 -11.12418 -10.36957 -10.32615 -10.16190 -10.04716 -9.74401 -8.49050 -5.98241 1.37555 1.39075 1.50480 1.56801 1.93249 2.01574 2.26759 2.84578 2.95633 3.16693 3.22969 3.43481 3.65722 3.68183 3.70801 3.87408 4.10024 4.14476 4.16086 4.26028 4.29402 4.32710 4.43769 4.46108 4.48178 4.50349 4.51802 4.57562 4.65958 4.77741 4.78629 4.80329 4.85781 4.86037 4.90621 4.99121 4.99621 5.13869 5.18098 5.29632 5.32769 5.36231 5.38567 5.40955 5.53916 5.88108 6.05896 6.09057 6.56814 6.57412 7.09412 7.25286 7.52332 8.07915 8.68249 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002323 C = 0.002097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.373863 B =12048.751856 C =13348.241692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.384 6.384 3 C 0.079 3.921 4 H 0.122 0.878 5 C 0.505 3.495 6 O -0.574 6.574 7 N -0.710 5.710 8 C 0.156 3.844 9 H 0.059 0.941 10 C -0.153 4.153 11 C -0.097 4.097 12 C 0.012 3.988 13 N -0.469 5.469 14 C 0.021 3.979 15 C 0.440 3.560 16 O -0.618 6.618 17 N -0.575 5.575 18 C -0.334 4.334 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.012 3.988 27 C -0.101 4.101 28 C -0.143 4.143 29 C -0.143 4.143 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.415 0.585 34 H 0.080 0.920 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.129 0.871 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.396 0.604 43 H 0.278 0.722 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.100 0.900 47 H 0.053 0.947 48 H 0.063 0.937 49 H 0.026 0.974 50 H 0.076 0.924 51 H 0.065 0.935 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.542 2.673 0.814 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.302 6.302 3 C 0.018 3.982 4 H 0.139 0.861 5 C 0.291 3.709 6 O -0.453 6.453 7 N -0.364 5.364 8 C 0.051 3.949 9 H 0.077 0.923 10 C -0.211 4.211 11 C -0.117 4.117 12 C -0.117 4.117 13 N -0.191 5.191 14 C -0.111 4.111 15 C 0.227 3.773 16 O -0.504 6.504 17 N -0.212 5.212 18 C -0.464 4.464 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.197 1.197 26 C -0.117 4.117 27 C -0.120 4.120 28 C -0.201 4.201 29 C -0.200 4.200 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.252 0.748 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.098 0.902 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.229 0.771 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.045 0.955 50 H 0.095 0.905 51 H 0.084 0.916 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -28.049 2.699 0.461 28.183 hybrid contribution 1.001 -1.024 -0.152 1.440 sum -27.048 1.675 0.308 27.102 Atomic orbital electron populations 1.23154 0.79135 1.03908 1.01387 1.88013 1.21508 1.26034 1.94650 1.22215 0.95219 0.87705 0.93069 0.86056 1.21292 0.82579 0.82566 0.84417 1.90697 1.65783 1.37493 1.51295 1.45939 1.44738 1.14104 1.31615 1.20866 0.89589 0.97653 0.86791 0.92307 1.22074 1.00486 1.02167 0.96343 1.22942 0.92554 0.99233 0.96922 1.23944 0.89757 1.03353 0.94619 1.68820 0.99927 1.40871 1.09529 1.22386 0.93065 0.99517 0.96138 1.20733 0.83438 0.82513 0.90599 1.90476 1.76812 1.50926 1.32160 1.41954 1.13870 1.51368 1.14039 1.19616 0.96721 1.36772 0.93282 0.90368 1.26074 0.98744 0.95688 1.00868 1.69668 1.22502 1.37837 1.26136 0.84982 0.77137 0.78721 0.77464 1.19534 1.19360 1.19750 1.23693 0.93269 0.95439 0.99288 1.21538 0.97067 1.00073 0.93339 1.21723 0.98112 0.99471 1.00783 1.21820 0.98006 1.02581 0.97567 0.89074 0.93088 0.91643 0.74762 0.90074 0.93846 0.90243 0.85332 0.90267 0.86948 0.87017 0.91072 0.77068 0.91248 0.91686 0.93316 0.88212 0.92795 0.91817 0.95517 0.90502 0.91606 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.45 113.37 1.18 1.42 16 2 O -0.38 -7.94 8.71 -129.96 -1.13 -9.07 16 3 C 0.08 1.30 2.37 29.85 0.07 1.37 16 4 H 0.12 1.10 7.59 -2.39 -0.02 1.09 16 5 C 0.50 11.54 5.95 87.66 0.52 12.06 16 6 O -0.57 -19.26 16.13 15.98 0.26 -19.00 16 7 N -0.71 -12.26 5.01 -442.54 -2.22 -14.48 16 8 C 0.16 3.02 2.51 44.99 0.11 3.13 16 9 H 0.06 1.55 7.26 -2.39 -0.02 1.53 16 10 C -0.15 -2.31 9.29 71.98 0.67 -1.64 16 11 C -0.10 -1.90 3.64 -10.45 -0.04 -1.94 16 12 C 0.01 0.25 6.36 83.58 0.53 0.78 16 13 N -0.47 -15.03 6.06 -932.41 -5.65 -20.68 16 14 C 0.02 0.74 5.31 85.56 0.45 1.20 16 15 C 0.44 21.75 7.62 87.66 0.67 22.42 16 16 O -0.62 -35.16 15.34 -3.05 -0.05 -35.21 16 17 N -0.57 -30.58 5.29 -306.99 -1.62 -32.20 16 18 C -0.33 -19.50 9.68 84.04 0.81 -18.69 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 22 Si 0.99 43.82 29.55 68.60 2.03 45.85 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.01 0.38 6.28 83.58 0.53 0.90 16 27 C -0.10 -1.47 2.73 -10.79 -0.03 -1.50 16 28 C -0.14 -3.08 8.82 71.98 0.63 -2.45 16 29 C -0.14 -1.47 8.44 71.98 0.61 -0.86 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 32 H 0.07 0.49 7.00 -2.39 -0.02 0.48 16 33 H 0.42 4.52 8.04 -92.71 -0.75 3.77 16 34 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.05 7.48 -2.39 -0.02 1.03 16 37 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.08 1.54 7.73 -2.39 -0.02 1.53 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.07 2.32 7.56 -2.39 -0.02 2.30 16 42 H 0.40 20.01 7.90 -92.71 -0.73 19.27 16 43 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 44 H 0.06 2.28 8.13 -2.39 -0.02 2.26 16 45 H 0.05 1.64 7.49 -2.39 -0.02 1.62 16 46 H 0.10 1.12 7.57 -2.39 -0.02 1.10 16 47 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.03 0.71 7.16 -2.39 -0.02 0.69 16 50 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 51 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.06 0.67 7.03 -2.39 -0.02 0.65 16 Total: -1.00 -80.80 417.94 -1.47 -82.26 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -0.56 Total: 37.14 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.19 Total: 15.91 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -9.21 Total: -117.89 kcal Atomic # 8 Polarization: -62.35 SS G_CDS: -0.92 Total: -63.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -80.80 -1.47 -82.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282735488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.028 kcal (2) G-P(sol) polarization free energy of solvation -80.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds