Wall clock time and date at job start Wed Apr 1 2020 01:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00106 * 2 1 4 4 H 1.08999 * 109.47664 * 29.99948 * 3 2 1 5 5 C 1.50702 * 109.47030 * 269.99660 * 3 2 1 6 6 O 1.21278 * 120.00029 * 355.00349 * 5 3 2 7 7 N 1.34785 * 119.99951 * 175.00071 * 5 3 2 8 8 C 1.46493 * 119.99744 * 179.72991 * 7 5 3 9 9 H 1.09008 * 109.47466 * 325.27264 * 8 7 5 10 10 C 1.52996 * 109.47436 * 85.27657 * 8 7 5 11 11 C 1.53005 * 109.47130 * 205.27526 * 8 7 5 12 12 C 1.53931 * 113.73823 * 161.87041 * 11 8 7 13 13 N 1.48182 * 86.10386 * 221.95956 * 12 11 8 14 14 C 1.46907 * 111.07139 * 137.52172 * 13 12 11 15 15 C 1.50701 * 109.47055 * 90.56513 * 14 13 12 16 16 O 1.21295 * 119.99784 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99529 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99367 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00232 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99531 * 179.97438 * 18 17 15 21 21 N 1.31417 * 120.00219 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99690 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47023 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46974 * 120.00253 * 22 20 18 25 25 H 1.48499 * 109.46828 * 240.00113 * 22 20 18 26 26 C 1.47961 * 90.80196 * 24.60094 * 13 12 11 27 27 C 1.52998 * 109.47192 * 150.00403 * 3 2 1 28 28 C 1.53012 * 109.46983 * 299.99787 * 27 3 2 29 29 C 1.52998 * 109.47400 * 59.99376 * 27 3 2 30 30 H 1.08997 * 109.47850 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46983 * 300.00598 * 1 2 3 32 32 H 1.09004 * 109.47105 * 59.99728 * 1 2 3 33 33 H 0.96996 * 120.00037 * 0.02562 * 7 5 3 34 34 H 1.09000 * 109.47388 * 300.14977 * 10 8 7 35 35 H 1.09000 * 109.47243 * 60.15211 * 10 8 7 36 36 H 1.09003 * 109.47172 * 180.15560 * 10 8 7 37 37 H 1.08999 * 112.93541 * 293.44129 * 11 8 7 38 38 H 1.09006 * 113.76075 * 336.24131 * 12 11 8 39 39 H 1.08999 * 113.75979 * 107.60365 * 12 11 8 40 40 H 1.09003 * 109.46446 * 210.56594 * 14 13 12 41 41 H 1.09000 * 109.47154 * 330.56388 * 14 13 12 42 42 H 0.96998 * 120.00364 * 0.02562 * 17 15 14 43 43 H 0.96995 * 119.99674 * 179.97438 * 21 20 18 44 44 H 1.08998 * 113.76365 * 221.09060 * 26 13 12 45 45 H 1.09004 * 113.85895 * 89.72870 * 26 13 12 46 46 H 1.09001 * 109.47399 * 179.97438 * 27 3 2 47 47 H 1.09001 * 109.46927 * 59.99866 * 28 27 3 48 48 H 1.08990 * 109.47288 * 179.97438 * 28 27 3 49 49 H 1.09002 * 109.46416 * 300.00453 * 28 27 3 50 50 H 1.09001 * 109.47307 * 300.00622 * 29 27 3 51 51 H 1.09003 * 109.46924 * 60.00620 * 29 27 3 52 52 H 1.09004 * 109.47285 * 180.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6590 3.0124 -1.6686 8 6 2.8633 3.4564 -3.0496 9 1 3.2129 2.6184 -3.6528 10 6 1.5423 3.9781 -3.6184 11 6 3.9072 4.5747 -3.0766 12 6 4.5230 4.8141 -4.4669 13 7 5.8186 4.9432 -3.7594 14 6 6.8879 4.2429 -4.4835 15 6 7.5439 5.1925 -5.4524 16 8 7.1589 6.3400 -5.5316 17 7 8.5591 4.7670 -6.2301 18 6 9.1563 5.6312 -7.1112 19 1 8.8135 6.6529 -7.1818 20 6 10.2032 5.1927 -7.9126 21 7 10.6207 3.9496 -7.8264 22 14 11.0164 6.3698 -9.1137 23 1 10.3660 7.7014 -9.0187 24 1 12.4580 6.4987 -8.7812 25 1 10.8720 5.8452 -10.4954 26 6 5.3116 4.1219 -2.6379 27 6 3.3589 1.2632 0.7211 28 6 3.1515 0.7972 2.1638 29 6 4.2926 0.2891 0.0000 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.8476 3.6151 -0.9324 34 1 0.7978 3.1823 -3.5967 35 1 1.1941 4.8178 -3.0169 36 1 1.6938 4.3059 -4.6468 37 1 3.5665 5.4858 -2.5849 38 1 4.4674 3.9483 -5.1269 39 1 4.1876 5.7354 -4.9431 40 1 7.6298 3.8789 -3.7726 41 1 6.4648 3.4003 -5.0305 42 1 8.8672 3.8495 -6.1664 43 1 11.3513 3.6434 -8.3861 44 1 5.6051 4.4913 -1.6553 45 1 5.4865 3.0530 -2.7600 46 1 3.8025 2.2588 0.7208 47 1 2.7081 -0.1985 2.1638 48 1 4.1123 0.7667 2.6774 49 1 2.4862 1.4912 2.6775 50 1 3.8492 -0.7067 0.0000 51 1 4.4405 0.6210 -1.0277 52 1 5.2534 0.2586 0.5140 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282735489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:27 Heat of formation + Delta-G solvation = -118.981961 kcal Electronic energy + Delta-G solvation = -30583.927581 eV Core-core repulsion = 26390.379966 eV Total energy + Delta-G solvation = -4193.547615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69200 -40.92621 -39.65417 -38.56980 -36.38435 -35.93321 -35.72802 -33.32201 -32.54367 -30.74646 -28.79499 -28.01299 -27.46559 -27.18701 -26.78143 -25.59106 -23.13214 -21.99203 -21.13848 -21.00003 -20.52842 -19.90644 -18.50534 -17.92607 -17.76265 -17.29044 -16.75235 -16.64655 -16.40265 -16.31787 -15.83655 -15.64003 -15.62542 -15.19629 -14.92038 -14.82044 -14.55848 -14.20845 -14.06686 -13.94342 -13.70471 -13.52630 -13.40893 -13.33317 -13.00937 -12.91459 -12.90683 -12.55863 -12.46052 -12.42004 -12.13650 -12.09806 -11.90775 -11.87119 -11.72665 -11.64301 -11.60981 -11.51080 -11.47068 -10.38937 -10.24921 -10.13541 -10.02224 -9.62274 -8.47730 -5.96713 1.35485 1.40217 1.54915 1.59477 2.03195 2.04659 2.27621 2.76619 2.82865 3.18169 3.33493 3.41416 3.61940 3.74785 3.77011 3.91891 4.10751 4.16416 4.17956 4.20144 4.32525 4.37494 4.39277 4.47945 4.49412 4.50271 4.52320 4.55130 4.70062 4.75854 4.78239 4.82989 4.84316 4.86966 4.95841 4.99412 5.06394 5.18127 5.18737 5.31593 5.39149 5.40218 5.42184 5.50574 5.51953 5.89105 6.05123 6.07676 6.59313 6.60302 7.11934 7.28112 7.55281 8.11463 8.70063 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020049 B = 0.001998 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.234188 B =14011.074569 C =14553.206157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.376 6.376 3 C 0.078 3.922 4 H 0.116 0.884 5 C 0.491 3.509 6 O -0.575 6.575 7 N -0.706 5.706 8 C 0.158 3.842 9 H 0.062 0.938 10 C -0.156 4.156 11 C -0.097 4.097 12 C 0.013 3.987 13 N -0.479 5.479 14 C 0.023 3.977 15 C 0.443 3.557 16 O -0.617 6.617 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.078 0.922 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.013 3.987 27 C -0.083 4.083 28 C -0.141 4.141 29 C -0.145 4.145 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.030 0.970 33 H 0.416 0.584 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.051 0.949 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.047 0.953 51 H 0.033 0.967 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.830 -6.853 22.115 30.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.016 3.984 4 H 0.133 0.867 5 C 0.278 3.722 6 O -0.454 6.454 7 N -0.360 5.360 8 C 0.053 3.947 9 H 0.080 0.920 10 C -0.215 4.215 11 C -0.116 4.116 12 C -0.117 4.117 13 N -0.202 5.202 14 C -0.108 4.108 15 C 0.230 3.770 16 O -0.502 6.502 17 N -0.215 5.215 18 C -0.461 4.461 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.115 4.115 27 C -0.102 4.102 28 C -0.198 4.198 29 C -0.202 4.202 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.254 0.746 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.142 0.858 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.124 0.876 41 H 0.090 0.910 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.090 0.910 46 H 0.128 0.872 47 H 0.070 0.930 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.066 0.934 51 H 0.052 0.948 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.704 -6.273 21.433 29.782 hybrid contribution 0.466 -0.564 -1.196 1.402 sum -19.239 -6.837 20.237 28.747 Atomic orbital electron populations 1.22976 0.79805 1.03882 1.00405 1.87970 1.21063 1.26043 1.94273 1.22340 0.98394 0.86922 0.90718 0.86677 1.21884 0.76039 0.81474 0.92816 1.90707 1.51837 1.55119 1.47704 1.45931 1.67046 1.14156 1.08853 1.20812 0.95191 0.95492 0.83232 0.91987 1.22080 0.96214 1.01279 1.01879 1.23135 0.93135 0.99133 0.96191 1.23987 0.89957 1.01440 0.96268 1.68383 1.02704 1.42336 1.06759 1.22342 0.97217 0.94467 0.96817 1.20787 0.82578 0.89379 0.84252 1.90478 1.66531 1.21513 1.71725 1.41984 1.30879 1.13462 1.35201 1.19695 1.14823 0.95085 1.16528 0.90373 1.26074 0.97205 0.98387 0.99848 1.69685 1.28804 1.16494 1.41336 0.84853 0.77974 0.77796 0.77600 1.19753 1.19509 1.19589 1.24049 0.93414 0.96949 0.97100 1.21299 0.91418 1.01590 0.95882 1.21752 1.02664 1.01824 0.93540 1.21758 0.99674 0.99590 0.99211 0.88755 0.91423 0.95147 0.74632 0.93703 0.90417 0.91488 0.85835 0.91487 0.90399 0.87627 0.90953 0.77144 0.91323 0.87281 0.91039 0.87210 0.92959 0.91451 0.90992 0.93425 0.94760 0.91185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.81 113.37 1.23 1.56 16 2 O -0.38 -6.86 8.54 -129.99 -1.11 -7.97 16 3 C 0.08 1.04 2.26 29.85 0.07 1.11 16 4 H 0.12 0.81 7.79 -2.39 -0.02 0.79 16 5 C 0.49 9.37 5.84 87.66 0.51 9.88 16 6 O -0.58 -17.01 16.17 15.97 0.26 -16.75 16 7 N -0.71 -9.71 4.91 -442.53 -2.17 -11.88 16 8 C 0.16 2.82 2.29 44.99 0.10 2.93 16 9 H 0.06 1.49 7.48 -2.38 -0.02 1.47 16 10 C -0.16 -2.65 9.44 71.98 0.68 -1.97 16 11 C -0.10 -1.77 3.35 -10.14 -0.03 -1.81 16 12 C 0.01 0.36 7.43 86.37 0.64 1.00 16 13 N -0.48 -15.09 5.65 -911.70 -5.15 -20.24 16 14 C 0.02 0.83 5.28 85.56 0.45 1.29 16 15 C 0.44 21.87 7.83 87.66 0.69 22.55 16 16 O -0.62 -35.37 16.01 -3.08 -0.05 -35.42 16 17 N -0.58 -30.63 5.29 -306.98 -1.62 -32.26 16 18 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 21 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 22 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 23 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 26 C 0.01 0.27 7.38 86.41 0.64 0.91 16 27 C -0.08 -0.89 2.77 -10.79 -0.03 -0.92 16 28 C -0.14 -1.17 9.05 71.99 0.65 -0.52 16 29 C -0.14 -2.35 8.80 71.98 0.63 -1.72 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.03 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.42 2.89 8.38 -92.71 -0.78 2.12 16 34 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 37 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.07 1.85 7.38 -2.38 -0.02 1.84 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 41 H 0.07 2.35 7.39 -2.39 -0.02 2.34 16 42 H 0.39 19.94 7.90 -92.71 -0.73 19.21 16 43 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 44 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.46 7.88 -2.39 -0.02 1.45 16 46 H 0.11 0.66 7.92 -2.39 -0.02 0.64 16 47 H 0.05 0.59 7.68 -2.39 -0.02 0.58 16 48 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 49 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 51 H 0.03 0.69 7.22 -2.39 -0.02 0.67 16 52 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -79.54 424.02 -0.62 -80.17 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.60 Total: 33.72 kcal Atomic # 6 Polarization: 7.88 SS G_CDS: 7.51 Total: 15.38 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -8.66 Total: -114.92 kcal Atomic # 8 Polarization: -59.24 SS G_CDS: -0.90 Total: -60.14 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -79.54 -0.62 -80.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282735489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.814 kcal (2) G-P(sol) polarization free energy of solvation -79.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds