Wall clock time and date at job start Wed Apr 1 2020 01:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99883 * 2 1 4 4 H 1.08993 * 109.47660 * 29.99925 * 3 2 1 5 5 C 1.50703 * 109.47055 * 269.99729 * 3 2 1 6 6 O 1.21284 * 119.99732 * 355.00197 * 5 3 2 7 7 N 1.34776 * 119.99951 * 175.00007 * 5 3 2 8 8 C 1.46504 * 119.99832 * 179.97438 * 7 5 3 9 9 H 1.09004 * 109.46870 * 35.00641 * 8 7 5 10 10 C 1.53001 * 109.47505 * 275.00320 * 8 7 5 11 11 C 1.52995 * 109.46853 * 154.99917 * 8 7 5 12 12 C 1.53936 * 113.73820 * 276.73246 * 11 8 7 13 13 N 1.47957 * 86.17924 * 221.91981 * 12 11 8 14 14 C 1.46907 * 110.99757 * 137.58149 * 13 12 11 15 15 C 1.50693 * 109.47146 * 90.64094 * 14 13 12 16 16 O 1.21298 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00243 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00241 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99945 * 179.97438 * 18 17 15 21 21 N 1.31403 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46975 * 90.00951 * 22 20 18 24 24 H 1.48499 * 109.46931 * 210.00355 * 22 20 18 25 25 H 1.48494 * 109.47667 * 330.00448 * 22 20 18 26 26 C 1.47955 * 90.76618 * 24.68901 * 13 12 11 27 27 C 1.53006 * 109.46890 * 149.99907 * 3 2 1 28 28 C 1.52997 * 109.47127 * 299.99597 * 27 3 2 29 29 C 1.52992 * 109.47223 * 60.00103 * 27 3 2 30 30 H 1.09004 * 109.47408 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47183 * 60.00747 * 1 2 3 32 32 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00136 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.46652 * 300.00118 * 10 8 7 35 35 H 1.09006 * 109.46833 * 59.99919 * 10 8 7 36 36 H 1.08992 * 109.46990 * 180.02562 * 10 8 7 37 37 H 1.09004 * 112.93742 * 48.43785 * 11 8 7 38 38 H 1.09002 * 113.75392 * 336.23810 * 12 11 8 39 39 H 1.09003 * 113.75988 * 107.60357 * 12 11 8 40 40 H 1.09004 * 109.47055 * 210.64049 * 14 13 12 41 41 H 1.08994 * 109.47010 * 330.63839 * 14 13 12 42 42 H 0.96992 * 119.99406 * 0.02562 * 17 15 14 43 43 H 0.97002 * 120.00154 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.76155 * 220.99356 * 26 13 12 45 45 H 1.09005 * 113.76122 * 89.62400 * 26 13 12 46 46 H 1.08998 * 109.46505 * 179.97438 * 27 3 2 47 47 H 1.09002 * 109.47153 * 180.02562 * 28 27 3 48 48 H 1.09001 * 109.46832 * 60.00321 * 28 27 3 49 49 H 1.09004 * 109.47261 * 300.00303 * 28 27 3 50 50 H 1.09002 * 109.47103 * 179.97438 * 29 27 3 51 51 H 1.09001 * 109.47066 * 299.99881 * 29 27 3 52 52 H 1.08996 * 109.47747 * 59.99547 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.8580 3.4583 -3.0499 9 1 2.0968 3.0112 -3.6893 10 6 4.2452 3.0269 -3.5301 11 6 2.7472 4.9828 -3.1146 12 6 1.2989 5.4952 -3.2119 13 7 1.8119 6.4594 -4.2100 14 6 0.8931 6.5755 -5.3504 15 6 -0.1000 7.6775 -5.0852 16 8 -0.0479 8.3042 -4.0479 17 7 -1.0462 7.9667 -6.0005 18 6 -1.9500 8.9688 -5.7589 19 1 -1.9036 9.5268 -4.8354 20 6 -2.9251 9.2673 -6.7028 21 7 -2.9812 8.5887 -7.8267 22 14 -4.1561 10.6333 -6.3740 23 1 -3.6182 11.9186 -6.8877 24 1 -5.4355 10.3224 -7.0607 25 1 -4.3932 10.7448 -4.9123 26 6 2.9415 5.5587 -4.5288 27 6 3.3589 1.2632 0.7213 28 6 3.1514 0.7974 2.1638 29 6 4.2927 0.2893 0.0001 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.8474 3.6151 -0.9324 34 1 5.0063 3.4739 -2.8906 35 1 4.3241 1.9406 -3.4840 36 1 4.3935 3.3590 -4.5575 37 1 3.3415 5.4847 -2.3510 38 1 0.6017 4.7656 -3.6240 39 1 0.9358 5.9623 -2.2963 40 1 1.4604 6.8069 -6.2520 41 1 0.3625 5.6333 -5.4869 42 1 -1.0880 7.4653 -6.8297 43 1 -3.6621 8.7968 -8.4855 44 1 3.8909 6.0764 -4.6655 45 1 2.7248 4.8477 -5.3261 46 1 3.8023 2.2589 0.7209 47 1 4.1121 0.7677 2.6778 48 1 2.7080 -0.1984 2.1638 49 1 2.4861 1.4913 2.6776 50 1 5.2536 0.2595 0.5137 51 1 3.8493 -0.7065 0.0001 52 1 4.4405 0.6210 -1.0275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282735490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:32 Heat of formation + Delta-G solvation = -91.914702 kcal Electronic energy + Delta-G solvation = -30445.920229 eV Core-core repulsion = 26253.546339 eV Total energy + Delta-G solvation = -4192.373890 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.78768 -39.93852 -38.04577 -37.59568 -35.52134 -35.09115 -33.86262 -31.69851 -31.17501 -29.51031 -28.17963 -27.48585 -26.53633 -26.00362 -25.56254 -24.10954 -22.20789 -21.25662 -20.40154 -19.60502 -19.18714 -17.94258 -17.60733 -17.24435 -16.44536 -16.10311 -15.93398 -15.39403 -15.21915 -14.92530 -14.70476 -14.59300 -14.35113 -14.19461 -13.87306 -13.72364 -13.59929 -13.24665 -13.06156 -12.76580 -12.67907 -12.56512 -12.41482 -12.33566 -11.98744 -11.86485 -11.61198 -11.53466 -11.37113 -11.23093 -11.12435 -11.07058 -10.94460 -10.80576 -10.65879 -10.63353 -10.38527 -10.19674 -9.48413 -9.48277 -9.31283 -8.70074 -8.15433 -7.94102 -6.39762 -3.80471 2.38040 2.77136 3.18670 3.26894 3.32734 3.43295 3.89644 3.95163 4.19999 4.26801 4.29856 4.36359 4.52841 4.54314 4.68494 4.90722 4.96809 5.01858 5.05744 5.11065 5.16396 5.21266 5.23084 5.24197 5.34309 5.38229 5.43662 5.44046 5.47945 5.51755 5.56054 5.64800 5.65028 5.69417 5.75546 5.76577 5.88677 5.91793 6.00386 6.04429 6.13753 6.29587 6.32796 6.59267 6.65858 7.18034 7.27018 7.56695 8.01053 8.08107 8.64450 9.20422 9.57057 10.09571 10.78178 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002029 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.065880 B =13797.371470 C =14575.493725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.076 3.924 4 H 0.086 0.914 5 C 0.493 3.507 6 O -0.524 6.524 7 N -0.722 5.722 8 C 0.150 3.850 9 H 0.088 0.912 10 C -0.161 4.161 11 C -0.125 4.125 12 C 0.017 3.983 13 N -0.449 5.449 14 C 0.009 3.991 15 C 0.447 3.553 16 O -0.576 6.576 17 N -0.568 5.568 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.010 3.990 27 C -0.086 4.086 28 C -0.145 4.145 29 C -0.146 4.146 30 H 0.042 0.958 31 H 0.045 0.955 32 H 0.089 0.911 33 H 0.399 0.601 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.057 0.943 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.056 0.944 51 H 0.066 0.934 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.337 -17.259 15.012 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.014 3.986 4 H 0.104 0.896 5 C 0.278 3.722 6 O -0.399 6.399 7 N -0.375 5.375 8 C 0.045 3.955 9 H 0.106 0.894 10 C -0.219 4.219 11 C -0.144 4.144 12 C -0.112 4.112 13 N -0.171 5.171 14 C -0.123 4.123 15 C 0.232 3.768 16 O -0.460 6.460 17 N -0.205 5.205 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 C -0.120 4.120 27 C -0.104 4.104 28 C -0.202 4.202 29 C -0.203 4.203 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.109 0.891 45 H 0.088 0.912 46 H 0.103 0.897 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.075 0.925 51 H 0.085 0.915 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.255 -16.864 15.048 26.722 hybrid contribution -1.140 0.180 -0.624 1.312 sum 13.115 -16.684 14.424 25.660 Atomic orbital electron populations 1.22880 0.80552 1.03263 1.00160 1.87966 1.19990 1.24679 1.94345 1.22158 0.97121 0.87069 0.92272 0.89649 1.21335 0.76832 0.81802 0.92201 1.90720 1.49737 1.53496 1.45994 1.46127 1.68083 1.14383 1.08943 1.21052 0.98189 0.93297 0.82921 0.89438 1.22133 0.96226 1.01849 1.01689 1.23318 0.98581 0.93251 0.99266 1.23985 0.94702 0.93720 0.98744 1.68376 1.05377 1.34966 1.08344 1.22483 0.95790 0.98736 0.95244 1.19694 0.84025 0.87201 0.85902 1.90514 1.74416 1.53911 1.27124 1.41882 1.27405 1.32949 1.18255 1.19686 1.07350 1.11128 1.04556 0.87996 1.25256 0.98702 0.98904 0.95197 1.69610 1.35674 1.41104 1.08062 0.85859 0.79294 0.80497 0.78645 1.20409 1.20955 1.19466 1.23960 0.97757 0.94944 0.95312 1.21210 0.92634 1.00820 0.95770 1.21788 1.01915 1.02279 0.94248 1.21780 0.98484 1.00147 0.99876 0.93899 0.93581 0.89207 0.76631 0.92313 0.92221 0.91340 0.87781 0.91492 0.89170 0.89411 0.92479 0.77561 0.91918 0.89073 0.91195 0.89697 0.92186 0.91541 0.92663 0.92472 0.91453 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -3.58 8.54 -55.09 -0.47 -4.05 16 3 C 0.08 0.63 2.26 -27.88 -0.06 0.57 16 4 H 0.09 0.56 7.79 -51.93 -0.40 0.16 16 5 C 0.49 5.27 5.83 -10.98 -0.06 5.21 16 6 O -0.52 -7.83 16.17 -14.31 -0.23 -8.07 16 7 N -0.72 -6.19 5.04 -53.80 -0.27 -6.46 16 8 C 0.15 1.45 2.42 -67.93 -0.16 1.28 16 9 H 0.09 1.05 7.37 -51.93 -0.38 0.67 16 10 C -0.16 -1.38 9.29 37.16 0.35 -1.04 16 11 C -0.12 -1.28 3.49 -89.69 -0.31 -1.59 16 12 C 0.02 0.24 7.51 -2.77 -0.02 0.22 16 13 N -0.45 -7.30 5.65 -239.75 -1.35 -8.66 16 14 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 15 C 0.45 10.81 7.83 -10.99 -0.09 10.73 16 16 O -0.58 -16.06 16.01 5.54 0.09 -15.97 16 17 N -0.57 -14.69 5.29 -10.96 -0.06 -14.74 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 22 Si 0.93 21.30 29.55 -169.99 -5.02 16.27 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 C 0.01 0.11 6.57 -2.77 -0.02 0.10 16 27 C -0.09 -0.56 2.77 -90.62 -0.25 -0.81 16 28 C -0.14 -0.81 9.05 37.16 0.34 -0.48 16 29 C -0.15 -1.13 8.80 37.15 0.33 -0.80 16 30 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.40 2.43 8.38 -40.82 -0.34 2.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.55 7.43 -51.93 -0.39 0.16 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.95 7.29 -51.93 -0.38 0.57 16 39 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 40 H 0.09 1.43 8.08 -51.93 -0.42 1.02 16 41 H 0.06 0.94 7.38 -51.93 -0.38 0.55 16 42 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 43 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 0.74 7.85 -51.93 -0.41 0.33 16 46 H 0.08 0.41 7.92 -51.93 -0.41 0.00 16 47 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 48 H 0.07 0.44 7.68 -51.93 -0.40 0.04 16 49 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 50 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.61 7.68 -51.93 -0.40 0.22 16 52 H 0.05 0.50 7.22 -51.93 -0.37 0.12 16 LS Contribution 422.63 15.07 6.37 6.37 Total: -1.00 -35.19 422.63 -8.54 -43.73 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -9.17 Total: 8.98 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: 0.85 Total: 6.75 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: -0.96 Total: -54.02 kcal Atomic # 8 Polarization: -27.47 SS G_CDS: -0.61 Total: -28.09 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.19 -8.54 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282735490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.186 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds