Wall clock time and date at job start Wed Apr 1 2020 01:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 113.99883 * 2 1 4 4 H 1.08993 * 109.47660 * 29.99925 * 3 2 1 5 5 C 1.50703 * 109.47055 * 269.99729 * 3 2 1 6 6 O 1.21284 * 119.99732 * 355.00197 * 5 3 2 7 7 N 1.34776 * 119.99951 * 175.00007 * 5 3 2 8 8 C 1.46504 * 119.99832 * 179.97438 * 7 5 3 9 9 H 1.09004 * 109.46870 * 35.00641 * 8 7 5 10 10 C 1.53001 * 109.47505 * 275.00320 * 8 7 5 11 11 C 1.52995 * 109.46853 * 154.99917 * 8 7 5 12 12 C 1.53936 * 113.73820 * 276.73246 * 11 8 7 13 13 N 1.47957 * 86.17924 * 221.91981 * 12 11 8 14 14 C 1.46907 * 110.99757 * 137.58149 * 13 12 11 15 15 C 1.50693 * 109.47146 * 90.64094 * 14 13 12 16 16 O 1.21298 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34783 * 120.00243 * 179.97438 * 15 14 13 18 18 C 1.37094 * 120.00241 * 179.97438 * 17 15 14 19 19 H 1.08001 * 119.99766 * 0.02562 * 18 17 15 20 20 C 1.38952 * 119.99945 * 179.97438 * 18 17 15 21 21 N 1.31403 * 119.99872 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99672 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46975 * 90.00951 * 22 20 18 24 24 H 1.48499 * 109.46931 * 210.00355 * 22 20 18 25 25 H 1.48494 * 109.47667 * 330.00448 * 22 20 18 26 26 C 1.47955 * 90.76618 * 24.68901 * 13 12 11 27 27 C 1.53006 * 109.46890 * 149.99907 * 3 2 1 28 28 C 1.52997 * 109.47127 * 299.99597 * 27 3 2 29 29 C 1.52992 * 109.47223 * 60.00103 * 27 3 2 30 30 H 1.09004 * 109.47408 * 300.00241 * 1 2 3 31 31 H 1.09001 * 109.47183 * 60.00747 * 1 2 3 32 32 H 1.09001 * 109.47356 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00136 * 0.02562 * 7 5 3 34 34 H 1.08998 * 109.46652 * 300.00118 * 10 8 7 35 35 H 1.09006 * 109.46833 * 59.99919 * 10 8 7 36 36 H 1.08992 * 109.46990 * 180.02562 * 10 8 7 37 37 H 1.09004 * 112.93742 * 48.43785 * 11 8 7 38 38 H 1.09002 * 113.75392 * 336.23810 * 12 11 8 39 39 H 1.09003 * 113.75988 * 107.60357 * 12 11 8 40 40 H 1.09004 * 109.47055 * 210.64049 * 14 13 12 41 41 H 1.08994 * 109.47010 * 330.63839 * 14 13 12 42 42 H 0.96992 * 119.99406 * 0.02562 * 17 15 14 43 43 H 0.97002 * 120.00154 * 179.97438 * 21 20 18 44 44 H 1.08997 * 113.76155 * 220.99356 * 26 13 12 45 45 H 1.09005 * 113.76122 * 89.62400 * 26 13 12 46 46 H 1.08998 * 109.46505 * 179.97438 * 27 3 2 47 47 H 1.09002 * 109.47153 * 180.02562 * 28 27 3 48 48 H 1.09001 * 109.46832 * 60.00321 * 28 27 3 49 49 H 1.09004 * 109.47261 * 300.00303 * 28 27 3 50 50 H 1.09002 * 109.47103 * 179.97438 * 29 27 3 51 51 H 1.09001 * 109.47066 * 299.99881 * 29 27 3 52 52 H 1.08996 * 109.47747 * 59.99547 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2145 1.7643 -1.4208 6 8 1.9791 1.0105 -2.3413 7 7 2.6588 3.0124 -1.6686 8 6 2.8580 3.4583 -3.0499 9 1 2.0968 3.0112 -3.6893 10 6 4.2452 3.0269 -3.5301 11 6 2.7472 4.9828 -3.1146 12 6 1.2989 5.4952 -3.2119 13 7 1.8119 6.4594 -4.2100 14 6 0.8931 6.5755 -5.3504 15 6 -0.1000 7.6775 -5.0852 16 8 -0.0479 8.3042 -4.0479 17 7 -1.0462 7.9667 -6.0005 18 6 -1.9500 8.9688 -5.7589 19 1 -1.9036 9.5268 -4.8354 20 6 -2.9251 9.2673 -6.7028 21 7 -2.9812 8.5887 -7.8267 22 14 -4.1561 10.6333 -6.3740 23 1 -3.6182 11.9186 -6.8877 24 1 -5.4355 10.3224 -7.0607 25 1 -4.3932 10.7448 -4.9123 26 6 2.9415 5.5587 -4.5288 27 6 3.3589 1.2632 0.7213 28 6 3.1514 0.7974 2.1638 29 6 4.2927 0.2893 0.0001 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 2.8474 3.6151 -0.9324 34 1 5.0063 3.4739 -2.8906 35 1 4.3241 1.9406 -3.4840 36 1 4.3935 3.3590 -4.5575 37 1 3.3415 5.4847 -2.3510 38 1 0.6017 4.7656 -3.6240 39 1 0.9358 5.9623 -2.2963 40 1 1.4604 6.8069 -6.2520 41 1 0.3625 5.6333 -5.4869 42 1 -1.0880 7.4653 -6.8297 43 1 -3.6621 8.7968 -8.4855 44 1 3.8909 6.0764 -4.6655 45 1 2.7248 4.8477 -5.3261 46 1 3.8023 2.2589 0.7209 47 1 4.1121 0.7677 2.6778 48 1 2.7080 -0.1984 2.1638 49 1 2.4861 1.4913 2.6776 50 1 5.2536 0.2595 0.5137 51 1 3.8493 -0.7065 0.0001 52 1 4.4405 0.6210 -1.0275 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282735490.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:31 Heat of formation + Delta-G solvation = -118.917730 kcal Electronic energy + Delta-G solvation = -30447.091168 eV Core-core repulsion = 26253.546339 eV Total energy + Delta-G solvation = -4193.544829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.70074 -40.96724 -39.66593 -38.59519 -36.40452 -35.94561 -35.72584 -33.32898 -32.57444 -30.70398 -28.81965 -28.02502 -27.61110 -27.10295 -26.75938 -25.56107 -23.21464 -22.02552 -21.15687 -20.99984 -20.47199 -19.90809 -18.50933 -17.99306 -17.80727 -17.22551 -16.71755 -16.65260 -16.47200 -16.37376 -15.87476 -15.70216 -15.54742 -15.17850 -14.96201 -14.82652 -14.55694 -14.29883 -14.05599 -13.92515 -13.70252 -13.53306 -13.37445 -13.34617 -12.99623 -12.92424 -12.74402 -12.68013 -12.57028 -12.44063 -12.14533 -12.11920 -11.84258 -11.83008 -11.77169 -11.65895 -11.64876 -11.51180 -11.48092 -10.39355 -10.27846 -10.14777 -10.02859 -9.61912 -8.48022 -5.97064 1.36605 1.39811 1.52917 1.57460 2.03249 2.04032 2.27348 2.77190 2.79549 3.17872 3.29178 3.44830 3.61896 3.67721 3.74613 3.91765 4.12830 4.15038 4.17067 4.22609 4.31227 4.35469 4.41921 4.45991 4.47100 4.49310 4.51637 4.52448 4.68502 4.75944 4.80184 4.80812 4.83554 4.85880 4.96753 4.99417 5.03829 5.15712 5.19792 5.30742 5.38521 5.40171 5.42979 5.48621 5.53884 5.88812 6.00136 6.07487 6.56458 6.59044 7.11375 7.24794 7.54808 8.11060 8.69499 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016603 B = 0.002029 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.065880 B =13797.371470 C =14575.493725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.074 3.926 4 H 0.107 0.893 5 C 0.491 3.509 6 O -0.574 6.574 7 N -0.710 5.710 8 C 0.156 3.844 9 H 0.062 0.938 10 C -0.154 4.154 11 C -0.096 4.096 12 C 0.009 3.991 13 N -0.481 5.481 14 C 0.023 3.977 15 C 0.442 3.558 16 O -0.618 6.618 17 N -0.577 5.577 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.273 1.273 26 C 0.015 3.985 27 C -0.082 4.082 28 C -0.141 4.141 29 C -0.143 4.143 30 H 0.064 0.936 31 H 0.026 0.974 32 H 0.097 0.903 33 H 0.415 0.585 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.395 0.605 43 H 0.278 0.722 44 H 0.109 0.891 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.071 0.929 48 H 0.052 0.948 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.046 0.954 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.530 -16.950 15.911 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.290 6.290 3 C 0.012 3.988 4 H 0.125 0.875 5 C 0.278 3.722 6 O -0.453 6.453 7 N -0.364 5.364 8 C 0.051 3.949 9 H 0.080 0.920 10 C -0.212 4.212 11 C -0.115 4.115 12 C -0.120 4.120 13 N -0.203 5.203 14 C -0.109 4.109 15 C 0.229 3.771 16 O -0.503 6.503 17 N -0.215 5.215 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.818 3.182 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.198 1.198 26 C -0.113 4.113 27 C -0.101 4.101 28 C -0.199 4.199 29 C -0.200 4.200 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.116 0.884 33 H 0.252 0.748 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.079 0.921 39 H 0.092 0.908 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.127 0.873 45 H 0.101 0.899 46 H 0.127 0.873 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.066 0.934 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.474 -16.551 15.950 27.709 hybrid contribution -1.487 0.065 -0.893 1.736 sum 13.986 -16.486 15.057 26.346 Atomic orbital electron populations 1.22968 0.79957 1.03947 1.00216 1.87947 1.20826 1.25922 1.94293 1.22372 0.98600 0.86849 0.90957 0.87501 1.21830 0.75865 0.81745 0.92770 1.90696 1.52032 1.54946 1.47598 1.46024 1.67110 1.14071 1.09154 1.20899 0.98306 0.92581 0.83134 0.91979 1.22070 0.95657 1.00800 1.02671 1.23129 0.95743 0.93396 0.99242 1.24000 0.97006 0.93318 0.97629 1.68345 1.06430 1.37302 1.08234 1.22356 0.94987 0.96679 0.96902 1.20806 0.83971 0.87654 0.84646 1.90474 1.75478 1.55701 1.28689 1.41976 1.27794 1.32871 1.18858 1.19651 1.09373 1.12718 1.04509 0.90408 1.26069 0.99828 1.00883 0.94695 1.69673 1.36228 1.41898 1.08452 0.84913 0.77263 0.77735 0.78336 1.19537 1.19499 1.19753 1.24083 0.96614 0.94332 0.96311 1.21288 0.91218 1.01726 0.95851 1.21758 1.02744 1.01750 0.93605 1.21742 0.99569 0.99380 0.99298 0.91705 0.95504 0.88409 0.74829 0.90426 0.93947 0.90428 0.85856 0.92143 0.90806 0.87396 0.90889 0.77121 0.91307 0.87261 0.89949 0.87320 0.91027 0.92912 0.91499 0.90780 0.93443 0.94448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.81 113.37 1.23 1.64 16 2 O -0.37 -7.51 8.54 -129.99 -1.11 -8.62 16 3 C 0.07 1.15 2.26 29.85 0.07 1.22 16 4 H 0.11 1.19 7.79 -2.39 -0.02 1.18 16 5 C 0.49 10.31 5.83 87.66 0.51 10.82 16 6 O -0.57 -17.67 16.17 15.95 0.26 -17.42 16 7 N -0.71 -11.14 5.04 -442.52 -2.23 -13.37 16 8 C 0.16 2.78 2.42 44.99 0.11 2.89 16 9 H 0.06 1.48 7.37 -2.38 -0.02 1.46 16 10 C -0.15 -2.33 9.29 71.98 0.67 -1.66 16 11 C -0.10 -1.75 3.49 -10.15 -0.04 -1.79 16 12 C 0.01 0.26 7.51 86.41 0.65 0.91 16 13 N -0.48 -15.08 5.65 -912.44 -5.15 -20.23 16 14 C 0.02 0.80 5.28 85.55 0.45 1.25 16 15 C 0.44 21.75 7.83 87.65 0.69 22.43 16 16 O -0.62 -35.32 16.01 -3.08 -0.05 -35.37 16 17 N -0.58 -30.50 5.29 -306.98 -1.62 -32.12 16 18 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 22 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 C 0.02 0.31 6.57 86.41 0.57 0.88 16 27 C -0.08 -0.91 2.77 -10.79 -0.03 -0.94 16 28 C -0.14 -1.27 9.05 71.98 0.65 -0.62 16 29 C -0.14 -2.09 8.80 71.98 0.63 -1.45 16 30 H 0.06 0.75 8.09 -2.39 -0.02 0.73 16 31 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.41 3.97 8.38 -92.71 -0.78 3.19 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.04 0.81 8.14 -2.38 -0.02 0.80 16 36 H 0.08 1.04 7.43 -2.39 -0.02 1.02 16 37 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 38 H 0.06 1.73 7.29 -2.39 -0.02 1.71 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 41 H 0.07 2.34 7.38 -2.39 -0.02 2.32 16 42 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 43 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 44 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.08 1.52 7.85 -2.38 -0.02 1.50 16 46 H 0.11 0.70 7.92 -2.39 -0.02 0.68 16 47 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.05 0.63 7.68 -2.39 -0.02 0.61 16 49 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.05 0.87 7.68 -2.39 -0.02 0.86 16 52 H 0.04 0.67 7.22 -2.39 -0.02 0.65 16 Total: -1.00 -79.10 422.63 -0.76 -79.85 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.59 Total: 35.30 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 7.44 Total: 16.71 kcal Atomic # 7 Polarization: -107.29 SS G_CDS: -8.72 Total: -116.01 kcal Atomic # 8 Polarization: -60.51 SS G_CDS: -0.90 Total: -61.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -79.10 -0.76 -79.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282735490.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.066 kcal (2) G-P(sol) polarization free energy of solvation -79.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds