Wall clock time and date at job start Wed Apr 1 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47476 * 2 1 4 4 C 1.50701 * 109.47151 * 120.00520 * 2 1 3 5 5 O 1.21279 * 119.99931 * 119.99519 * 4 2 1 6 6 N 1.34773 * 119.99586 * 299.99913 * 4 2 1 7 7 C 1.46507 * 119.99671 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46899 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47127 * 294.99629 * 8 7 6 10 10 C 1.53000 * 109.46965 * 174.99772 * 8 7 6 11 11 O 1.42904 * 109.46863 * 305.00071 * 10 8 7 12 12 N 1.46898 * 109.46954 * 54.99949 * 8 7 6 13 13 C 1.46906 * 110.99888 * 204.99693 * 12 8 7 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 8 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99682 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99941 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00091 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47394 * 90.00283 * 21 19 17 23 23 H 1.48507 * 109.46828 * 210.00133 * 21 19 17 24 24 H 1.48495 * 109.47159 * 329.99467 * 21 19 17 25 25 C 1.53002 * 109.46882 * 240.00013 * 2 1 3 26 26 C 1.54261 * 110.03369 * 177.16539 * 25 2 1 27 27 C 1.54886 * 104.19932 * 217.10831 * 26 25 2 28 28 C 1.54885 * 102.74788 * 37.94423 * 27 26 25 29 29 C 1.53877 * 110.02997 * 60.00208 * 25 2 1 30 30 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46831 * 300.00047 * 1 2 3 32 32 H 1.09000 * 109.47237 * 59.99662 * 1 2 3 33 33 H 0.96994 * 120.00511 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47009 * 59.99406 * 7 6 4 35 35 H 1.09004 * 109.46662 * 299.99426 * 7 6 4 36 36 H 1.08996 * 109.46989 * 64.99842 * 10 8 7 37 37 H 1.09000 * 109.47349 * 185.00317 * 10 8 7 38 38 H 0.96703 * 113.99787 * 179.97438 * 11 10 8 39 39 H 1.00902 * 111.00533 * 81.04100 * 12 8 7 40 40 H 1.09000 * 109.47033 * 300.00113 * 13 12 8 41 41 H 1.09001 * 109.46544 * 60.00058 * 13 12 8 42 42 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 43 43 H 0.97002 * 120.00138 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.01938 * 298.61679 * 25 2 1 45 45 H 1.09005 * 110.48685 * 335.78684 * 26 25 2 46 46 H 1.09007 * 110.48565 * 98.42713 * 26 25 2 47 47 H 1.09003 * 110.75440 * 279.63172 * 27 26 25 48 48 H 1.08998 * 110.91618 * 156.33498 * 27 26 25 49 49 H 1.09004 * 110.48602 * 203.38434 * 28 27 26 50 50 H 1.08997 * 110.60364 * 80.79420 * 28 27 26 51 51 H 1.08997 * 110.03395 * 238.56698 * 29 25 2 52 52 H 1.08993 * 110.03360 * 359.95084 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6507 8 6 1.6860 -0.2190 4.8999 9 1 2.1206 0.7795 4.9455 10 6 2.0912 -1.0089 6.1460 11 8 1.6196 -2.3531 6.0320 12 7 0.2220 -0.1136 4.8415 13 6 -0.2564 1.0227 5.6404 14 6 -1.7591 1.0982 5.5570 15 8 -2.3715 0.2856 4.8966 16 7 -2.4227 2.0692 6.2153 17 6 -3.7899 2.1375 6.1398 18 1 -4.3352 1.4135 5.5525 19 6 -4.4739 3.1382 6.8190 20 7 -5.7844 3.2041 6.7463 21 14 -3.5308 4.3900 7.8353 22 1 -3.1769 5.5537 6.9835 23 1 -4.3757 4.8449 8.9687 24 1 -2.2903 3.7665 8.3619 25 6 2.0400 -0.7213 -1.2493 26 6 3.5809 -0.6671 -1.2988 27 6 3.9068 -0.4938 -2.8030 28 6 2.7854 0.4580 -3.2883 29 6 1.5342 -0.0059 -2.5143 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1495 0.5387 2.5436 34 1 3.2856 -0.9402 3.6504 35 1 1.8325 -1.9683 3.6507 36 1 3.1773 -1.0115 6.2373 37 1 1.6533 -0.5440 7.0293 38 1 1.8414 -2.9132 6.7885 39 1 -0.2147 -0.9735 5.1383 40 1 0.0432 0.8878 6.6797 41 1 0.1762 1.9457 5.2543 42 1 -1.9330 2.7191 6.7430 43 1 -6.2620 3.9029 7.2201 44 1 1.7019 -1.7575 -1.2460 45 1 3.9512 0.1843 -0.7277 46 1 4.0076 -1.5961 -0.9205 47 1 3.8531 -1.4505 -3.3226 48 1 4.8870 -0.0368 -2.9387 49 1 2.6315 0.3501 -4.3620 50 1 3.0259 1.4918 -3.0403 51 1 0.9514 -0.6952 -3.1253 52 1 0.9248 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283818972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:21 Heat of formation + Delta-G solvation = -140.171794 kcal Electronic energy + Delta-G solvation = -30478.668422 eV Core-core repulsion = 26284.201948 eV Total energy + Delta-G solvation = -4194.466475 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21630 -38.91211 -38.08457 -37.56975 -35.48010 -34.18711 -33.79219 -33.22867 -31.70454 -30.15300 -28.88124 -27.66748 -26.39471 -26.03045 -23.93808 -23.54508 -20.97824 -20.72565 -20.37689 -19.47555 -19.28874 -18.48446 -17.71625 -17.25143 -16.47928 -15.93028 -15.67148 -15.47624 -15.28048 -15.17732 -14.92308 -14.45777 -14.40264 -13.99153 -13.75022 -13.50654 -13.35768 -13.24626 -13.14476 -12.86080 -12.52546 -12.36534 -12.26062 -12.12502 -11.80914 -11.72829 -11.52256 -11.36087 -11.25620 -11.20303 -11.10812 -11.04661 -10.77361 -10.64221 -10.62872 -10.47020 -10.25637 -10.01405 -9.61401 -9.54577 -8.87069 -8.65589 -8.25438 -8.20476 -6.34691 -3.86344 2.79146 2.97625 3.02454 3.11199 3.29062 3.68766 3.84315 4.05937 4.19843 4.41242 4.48898 4.55560 4.68069 4.76476 4.85597 4.94263 4.97409 5.08582 5.10665 5.15262 5.22776 5.28875 5.32856 5.39197 5.50143 5.51422 5.54290 5.55648 5.62883 5.66251 5.72389 5.77458 5.78400 5.83766 5.86130 5.93306 6.00438 6.06153 6.15281 6.18300 6.27730 6.39521 6.58500 6.99116 7.37719 7.53105 7.55255 7.70100 8.10611 8.39052 8.55592 8.91303 9.38292 9.78282 10.78399 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.002455 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.137186 B =11403.631247 C =13097.790510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 H 0.093 0.907 4 C 0.516 3.484 5 O -0.548 6.548 6 N -0.713 5.713 7 C 0.138 3.862 8 C 0.075 3.925 9 H 0.093 0.907 10 C 0.046 3.954 11 O -0.564 6.564 12 N -0.658 5.658 13 C 0.044 3.956 14 C 0.449 3.551 15 O -0.561 6.561 16 N -0.591 5.591 17 C -0.305 4.305 18 H 0.120 0.880 19 C 0.041 3.959 20 N -0.881 5.881 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.271 1.271 25 C -0.070 4.070 26 C -0.111 4.111 27 C -0.128 4.128 28 C -0.125 4.125 29 C -0.124 4.124 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.407 0.593 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.380 0.620 39 H 0.365 0.635 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.077 0.923 45 H 0.058 0.942 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.063 0.937 51 H 0.063 0.937 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.474 -3.263 -9.186 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.124 4.124 3 H 0.111 0.889 4 C 0.302 3.698 5 O -0.426 6.426 6 N -0.365 5.365 7 C 0.013 3.987 8 C -0.036 4.036 9 H 0.111 0.889 10 C -0.034 4.034 11 O -0.370 6.370 12 N -0.292 5.292 13 C -0.088 4.088 14 C 0.235 3.765 15 O -0.443 6.443 16 N -0.230 5.230 17 C -0.433 4.433 18 H 0.137 0.863 19 C -0.162 4.162 20 N -0.520 5.520 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.089 4.089 26 C -0.148 4.148 27 C -0.166 4.166 28 C -0.162 4.162 29 C -0.161 4.161 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.243 0.757 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.228 0.772 39 H 0.186 0.814 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.202 0.798 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.082 0.918 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.087 -3.843 -10.797 24.000 hybrid contribution 0.600 1.078 2.643 2.917 sum 21.687 -2.765 -8.154 23.333 Atomic orbital electron populations 1.21858 0.92484 1.03117 1.03090 1.21451 0.97747 1.00323 0.92915 0.88916 1.20605 0.79941 0.84593 0.84670 1.90654 1.38511 1.26478 1.86946 1.45838 1.53246 1.32373 1.05031 1.21152 0.97469 0.97291 0.82744 1.21995 0.90218 0.98460 0.92962 0.88881 1.22838 0.98170 0.83897 0.98490 1.86505 1.81315 1.21653 1.47482 1.60131 1.02878 1.08339 1.57890 1.21796 0.95528 0.95482 0.96029 1.19665 0.88102 0.84283 0.84478 1.90589 1.68806 1.41593 1.43294 1.42207 1.07890 1.27659 1.45257 1.19426 0.79658 1.14497 1.29767 0.86271 1.25047 0.95526 0.97768 0.97860 1.69624 1.06108 1.33786 1.42531 0.86667 0.79765 0.82123 0.80758 1.19598 1.20200 1.19623 1.21559 0.95621 0.99583 0.92150 1.22363 0.94953 1.02230 0.95272 1.22535 0.98096 0.99353 0.96575 1.22361 0.95293 0.99232 0.99361 1.22292 0.97596 1.00264 0.95956 0.92029 0.91353 0.91410 0.75697 0.91874 0.90440 0.93093 0.93127 0.77250 0.81368 0.93861 0.89516 0.79765 0.91592 0.90444 0.92327 0.90750 0.91726 0.91994 0.92036 0.91834 0.91779 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.83 37.16 0.33 -1.25 16 2 C -0.10 -1.08 2.02 -91.77 -0.19 -1.27 16 3 H 0.09 0.85 8.12 -51.93 -0.42 0.43 16 4 C 0.52 6.75 6.90 -10.99 -0.08 6.67 16 5 O -0.55 -8.79 14.54 5.56 0.08 -8.71 16 6 N -0.71 -8.63 5.28 -60.29 -0.32 -8.94 16 7 C 0.14 1.64 5.26 -4.04 -0.02 1.62 16 8 C 0.07 0.79 2.57 -67.71 -0.17 0.62 16 9 H 0.09 0.82 7.80 -51.93 -0.40 0.42 16 10 C 0.05 0.42 6.72 37.16 0.25 0.67 16 11 O -0.56 -5.78 12.05 -35.23 -0.42 -6.20 16 12 N -0.66 -9.32 5.32 -107.99 -0.57 -9.90 16 13 C 0.04 0.66 5.96 -4.97 -0.03 0.63 16 14 C 0.45 9.70 7.82 -10.99 -0.09 9.61 16 15 O -0.56 -14.61 15.78 5.54 0.09 -14.52 16 16 N -0.59 -13.53 5.09 -10.96 -0.06 -13.58 16 17 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 18 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -25.38 13.96 55.50 0.77 -24.60 16 21 Si 0.88 18.87 27.74 -169.99 -4.71 14.16 16 22 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 25 C -0.07 -0.72 2.11 -89.50 -0.19 -0.91 16 26 C -0.11 -1.14 5.18 -25.08 -0.13 -1.27 16 27 C -0.13 -1.08 6.91 -24.74 -0.17 -1.25 16 28 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 29 C -0.12 -1.06 5.91 -25.61 -0.15 -1.21 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.79 7.57 -51.93 -0.39 0.39 16 32 H 0.07 0.62 6.48 -51.93 -0.34 0.28 16 33 H 0.41 4.71 7.56 -40.82 -0.31 4.40 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.12 7.40 -51.93 -0.38 0.74 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.45 7.35 -51.93 -0.38 0.06 16 38 H 0.38 2.26 9.12 45.56 0.42 2.68 16 39 H 0.36 6.01 7.64 -39.29 -0.30 5.71 16 40 H 0.04 0.57 7.36 -51.93 -0.38 0.18 16 41 H 0.09 1.10 8.06 -51.93 -0.42 0.68 16 42 H 0.37 7.38 5.76 -40.82 -0.24 7.15 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 45 H 0.06 0.60 7.84 -51.93 -0.41 0.20 16 46 H 0.07 0.90 7.45 -51.93 -0.39 0.51 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 LS Contribution 409.90 15.07 6.18 6.18 Total: -1.00 -34.11 409.90 -8.05 -42.17 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -8.03 Total: 20.03 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -1.05 Total: 3.93 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.17 Total: -57.03 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.26 Total: -29.43 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.71 Total: 14.16 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.11 -8.05 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283818972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.006 kcal (2) G-P(sol) polarization free energy of solvation -34.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds