Wall clock time and date at job start Wed Apr 1 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 109.47476 * 2 1 4 4 C 1.50701 * 109.47151 * 120.00520 * 2 1 3 5 5 O 1.21279 * 119.99931 * 119.99519 * 4 2 1 6 6 N 1.34773 * 119.99586 * 299.99913 * 4 2 1 7 7 C 1.46507 * 119.99671 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.46899 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47127 * 294.99629 * 8 7 6 10 10 C 1.53000 * 109.46965 * 174.99772 * 8 7 6 11 11 O 1.42904 * 109.46863 * 305.00071 * 10 8 7 12 12 N 1.46898 * 109.46954 * 54.99949 * 8 7 6 13 13 C 1.46906 * 110.99888 * 204.99693 * 12 8 7 14 14 C 1.50699 * 109.47140 * 180.02562 * 13 12 8 15 15 O 1.21297 * 119.99980 * 359.97438 * 14 13 12 16 16 N 1.34779 * 120.00037 * 180.02562 * 14 13 12 17 17 C 1.37097 * 119.99944 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00055 * 359.97438 * 17 16 14 19 19 C 1.38948 * 119.99682 * 179.97438 * 17 16 14 20 20 N 1.31418 * 119.99941 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00091 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47394 * 90.00283 * 21 19 17 23 23 H 1.48507 * 109.46828 * 210.00133 * 21 19 17 24 24 H 1.48495 * 109.47159 * 329.99467 * 21 19 17 25 25 C 1.53002 * 109.46882 * 240.00013 * 2 1 3 26 26 C 1.54261 * 110.03369 * 177.16539 * 25 2 1 27 27 C 1.54886 * 104.19932 * 217.10831 * 26 25 2 28 28 C 1.54885 * 102.74788 * 37.94423 * 27 26 25 29 29 C 1.53877 * 110.02997 * 60.00208 * 25 2 1 30 30 H 1.08998 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46831 * 300.00047 * 1 2 3 32 32 H 1.09000 * 109.47237 * 59.99662 * 1 2 3 33 33 H 0.96994 * 120.00511 * 359.97438 * 6 4 2 34 34 H 1.08999 * 109.47009 * 59.99406 * 7 6 4 35 35 H 1.09004 * 109.46662 * 299.99426 * 7 6 4 36 36 H 1.08996 * 109.46989 * 64.99842 * 10 8 7 37 37 H 1.09000 * 109.47349 * 185.00317 * 10 8 7 38 38 H 0.96703 * 113.99787 * 179.97438 * 11 10 8 39 39 H 1.00902 * 111.00533 * 81.04100 * 12 8 7 40 40 H 1.09000 * 109.47033 * 300.00113 * 13 12 8 41 41 H 1.09001 * 109.46544 * 60.00058 * 13 12 8 42 42 H 0.96996 * 119.99844 * 359.97438 * 16 14 13 43 43 H 0.97002 * 120.00138 * 180.02562 * 20 19 17 44 44 H 1.08999 * 110.01938 * 298.61679 * 25 2 1 45 45 H 1.09005 * 110.48685 * 335.78684 * 26 25 2 46 46 H 1.09007 * 110.48565 * 98.42713 * 26 25 2 47 47 H 1.09003 * 110.75440 * 279.63172 * 27 26 25 48 48 H 1.08998 * 110.91618 * 156.33498 * 27 26 25 49 49 H 1.09004 * 110.48602 * 203.38434 * 28 27 26 50 50 H 1.08997 * 110.60364 * 80.79420 * 28 27 26 51 51 H 1.08997 * 110.03395 * 238.56698 * 29 25 2 52 52 H 1.08993 * 110.03360 * 359.95084 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1956 -0.9405 3.6507 8 6 1.6860 -0.2190 4.8999 9 1 2.1206 0.7795 4.9455 10 6 2.0912 -1.0089 6.1460 11 8 1.6196 -2.3531 6.0320 12 7 0.2220 -0.1136 4.8415 13 6 -0.2564 1.0227 5.6404 14 6 -1.7591 1.0982 5.5570 15 8 -2.3715 0.2856 4.8966 16 7 -2.4227 2.0692 6.2153 17 6 -3.7899 2.1375 6.1398 18 1 -4.3352 1.4135 5.5525 19 6 -4.4739 3.1382 6.8190 20 7 -5.7844 3.2041 6.7463 21 14 -3.5308 4.3900 7.8353 22 1 -3.1769 5.5537 6.9835 23 1 -4.3757 4.8449 8.9687 24 1 -2.2903 3.7665 8.3619 25 6 2.0400 -0.7213 -1.2493 26 6 3.5809 -0.6671 -1.2988 27 6 3.9068 -0.4938 -2.8030 28 6 2.7854 0.4580 -3.2883 29 6 1.5342 -0.0059 -2.5143 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.1495 0.5387 2.5436 34 1 3.2856 -0.9402 3.6504 35 1 1.8325 -1.9683 3.6507 36 1 3.1773 -1.0115 6.2373 37 1 1.6533 -0.5440 7.0293 38 1 1.8414 -2.9132 6.7885 39 1 -0.2147 -0.9735 5.1383 40 1 0.0432 0.8878 6.6797 41 1 0.1762 1.9457 5.2543 42 1 -1.9330 2.7191 6.7430 43 1 -6.2620 3.9029 7.2201 44 1 1.7019 -1.7575 -1.2460 45 1 3.9512 0.1843 -0.7277 46 1 4.0076 -1.5961 -0.9205 47 1 3.8531 -1.4505 -3.3226 48 1 4.8870 -0.0368 -2.9387 49 1 2.6315 0.3501 -4.3620 50 1 3.0259 1.4918 -3.0403 51 1 0.9514 -0.6952 -3.1253 52 1 0.9248 0.8545 -2.2382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283818972.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:20 Heat of formation + Delta-G solvation = -169.302885 kcal Electronic energy + Delta-G solvation = -30479.931641 eV Core-core repulsion = 26284.201948 eV Total energy + Delta-G solvation = -4195.729694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.19480 -40.36065 -39.18326 -38.48721 -36.43857 -35.95387 -35.00084 -34.14807 -33.71225 -31.19915 -29.61691 -28.47228 -27.92495 -26.88148 -25.46326 -24.53639 -21.87301 -21.47348 -21.27692 -21.25344 -20.32111 -20.12389 -18.59345 -18.18678 -17.75114 -17.14678 -16.88092 -16.62351 -16.35807 -16.25928 -16.05958 -15.67655 -15.33213 -15.17830 -15.05055 -14.69665 -14.35380 -14.23607 -14.17889 -14.07811 -14.04689 -13.70640 -13.33387 -13.14035 -12.98224 -12.91709 -12.58843 -12.39789 -12.37712 -12.24951 -12.03041 -11.96727 -11.82241 -11.77461 -11.51306 -11.49206 -11.42906 -11.23798 -10.94392 -10.59060 -10.41613 -10.22725 -9.90723 -9.33419 -8.39422 -6.00373 1.30995 1.37401 1.46002 1.75147 1.99128 2.24673 2.34654 2.70556 3.17005 3.25079 3.61171 3.62590 3.73294 3.77074 3.85383 4.00209 4.08857 4.19679 4.24970 4.26777 4.36417 4.39737 4.47228 4.56553 4.59237 4.60559 4.69508 4.72501 4.76867 4.79163 4.81811 4.89847 4.91630 5.01394 5.06675 5.13696 5.17269 5.26957 5.32715 5.43799 5.52333 5.54355 5.58406 5.60286 5.92511 6.06008 6.31900 6.61783 6.70070 6.89485 6.90905 7.38024 7.42469 8.00101 8.78356 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011596 B = 0.002455 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2414.137186 B =11403.631247 C =13097.790510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.115 0.885 4 C 0.509 3.491 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.141 3.859 8 C 0.080 3.920 9 H 0.124 0.876 10 C 0.047 3.953 11 O -0.591 6.591 12 N -0.674 5.674 13 C 0.060 3.940 14 C 0.449 3.551 15 O -0.614 6.614 16 N -0.591 5.591 17 C -0.326 4.326 18 H 0.053 0.947 19 C -0.018 4.018 20 N -0.937 5.937 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.279 1.279 24 H -0.229 1.229 25 C -0.070 4.070 26 C -0.109 4.109 27 C -0.126 4.126 28 C -0.121 4.121 29 C -0.121 4.121 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.086 0.914 33 H 0.412 0.588 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.397 0.603 39 H 0.348 0.652 40 H 0.076 0.924 41 H 0.124 0.876 42 H 0.390 0.610 43 H 0.278 0.722 44 H 0.053 0.947 45 H 0.059 0.941 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.072 0.928 51 H 0.065 0.935 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.774 -0.500 -8.201 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.133 0.867 4 C 0.296 3.704 5 O -0.463 6.463 6 N -0.359 5.359 7 C 0.017 3.983 8 C -0.030 4.030 9 H 0.142 0.858 10 C -0.033 4.033 11 O -0.399 6.399 12 N -0.307 5.307 13 C -0.072 4.072 14 C 0.237 3.763 15 O -0.498 6.498 16 N -0.233 5.233 17 C -0.456 4.456 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.786 3.214 22 H -0.180 1.180 23 H -0.204 1.204 24 H -0.152 1.152 25 C -0.089 4.089 26 C -0.147 4.147 27 C -0.163 4.163 28 C -0.158 4.158 29 C -0.158 4.158 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.078 0.922 38 H 0.247 0.753 39 H 0.168 0.832 40 H 0.094 0.906 41 H 0.142 0.858 42 H 0.226 0.774 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.091 0.909 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 24.425 -1.077 -9.796 26.338 hybrid contribution -0.471 0.049 2.266 2.315 sum 23.954 -1.028 -7.530 25.131 Atomic orbital electron populations 1.21820 0.92605 1.02055 1.03587 1.21457 0.97388 1.01105 0.91753 0.86688 1.21109 0.79393 0.84244 0.85638 1.90640 1.40206 1.28040 1.87461 1.45862 1.52805 1.32236 1.04988 1.21116 0.97892 0.95898 0.83433 1.22092 0.87821 1.00216 0.92913 0.85842 1.22874 0.99666 0.83168 0.97559 1.86477 1.81836 1.22678 1.48933 1.60082 1.05086 1.07325 1.58171 1.21740 0.89677 0.97326 0.98457 1.21026 0.91073 0.82268 0.81974 1.90573 1.70926 1.43302 1.45020 1.42018 1.06046 1.28915 1.46320 1.18980 0.82051 1.14173 1.30361 0.92898 1.26150 0.96540 1.00050 0.98880 1.69818 1.08726 1.35208 1.43995 0.85344 0.79344 0.78429 0.78238 1.18041 1.20397 1.15207 1.21532 0.95780 0.98509 0.93108 1.22298 0.94743 1.00950 0.96665 1.22527 0.99054 0.99719 0.95001 1.22359 0.94254 0.99358 0.99874 1.22282 0.98172 1.00385 0.95003 0.93879 0.92219 0.89483 0.75190 0.90909 0.93637 0.90630 0.92192 0.75349 0.83222 0.90584 0.85804 0.77444 0.91234 0.92885 0.92187 0.93253 0.91900 0.90920 0.90907 0.90959 0.91655 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.83 71.98 0.64 -2.39 16 2 C -0.10 -1.96 2.02 -11.54 -0.02 -1.99 16 3 H 0.12 1.86 8.12 -2.39 -0.02 1.84 16 4 C 0.51 13.38 6.90 87.66 0.61 13.98 16 5 O -0.58 -19.33 14.54 -3.03 -0.04 -19.37 16 6 N -0.71 -16.59 5.28 -463.04 -2.45 -19.04 16 7 C 0.14 3.21 5.26 86.38 0.45 3.67 16 8 C 0.08 1.45 2.57 44.92 0.12 1.57 16 9 H 0.12 1.55 7.80 -2.39 -0.02 1.53 16 10 C 0.05 0.70 6.72 71.98 0.48 1.18 16 11 O -0.59 -11.36 12.05 -148.98 -1.80 -13.16 16 12 N -0.67 -17.84 5.32 -495.57 -2.63 -20.47 16 13 C 0.06 1.58 5.96 85.56 0.51 2.09 16 14 C 0.45 19.05 7.82 87.66 0.69 19.74 16 15 O -0.61 -33.10 15.78 -3.08 -0.05 -33.15 16 16 N -0.59 -26.49 5.09 -306.98 -1.56 -28.05 16 17 C -0.33 -18.69 10.16 84.04 0.85 -17.83 16 18 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 19 C -0.02 -0.98 5.50 84.92 0.47 -0.51 16 20 N -0.94 -55.91 13.96 21.66 0.30 -55.61 16 21 Si 0.97 37.42 27.74 68.60 1.90 39.32 16 22 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 23 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 24 H -0.23 -7.26 6.52 99.48 0.65 -6.61 16 25 C -0.07 -1.44 2.11 -10.07 -0.02 -1.46 16 26 C -0.11 -2.22 5.18 31.67 0.16 -2.06 16 27 C -0.13 -1.97 6.91 31.88 0.22 -1.75 16 28 C -0.12 -1.64 6.83 31.67 0.22 -1.42 16 29 C -0.12 -1.89 5.91 31.32 0.19 -1.71 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.36 7.57 -2.39 -0.02 1.34 16 32 H 0.09 1.49 6.48 -2.39 -0.02 1.47 16 33 H 0.41 8.91 7.56 -92.71 -0.70 8.21 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.34 7.40 -2.39 -0.02 1.33 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.80 7.35 -2.39 -0.02 0.78 16 38 H 0.40 4.18 9.12 -74.06 -0.68 3.51 16 39 H 0.35 11.34 7.64 -89.69 -0.69 10.66 16 40 H 0.08 1.59 7.36 -2.39 -0.02 1.57 16 41 H 0.12 2.44 8.06 -2.39 -0.02 2.42 16 42 H 0.39 14.16 5.76 -92.71 -0.53 13.62 16 43 H 0.28 15.18 8.31 -92.71 -0.77 14.41 16 44 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 45 H 0.06 1.19 7.84 -2.38 -0.02 1.17 16 46 H 0.05 1.24 7.45 -2.38 -0.02 1.22 16 47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.08 1.09 6.33 -2.39 -0.02 1.07 16 Total: -1.00 -82.31 409.90 -2.47 -84.78 By element: Atomic # 1 Polarization: 55.34 SS G_CDS: -1.69 Total: 53.65 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 5.55 Total: 11.10 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.34 Total: -123.17 kcal Atomic # 8 Polarization: -63.79 SS G_CDS: -1.89 Total: -65.68 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 1.90 Total: 39.32 kcal Total: -82.31 -2.47 -84.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283818972.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.521 kcal (2) G-P(sol) polarization free energy of solvation -82.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds