Wall clock time and date at job start Wed Apr 1 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47208 * 2 1 4 4 C 1.50697 * 109.47029 * 120.00446 * 2 1 3 5 5 O 1.21282 * 120.00369 * 119.99977 * 4 2 1 6 6 N 1.34779 * 119.99759 * 299.99824 * 4 2 1 7 7 C 1.46498 * 120.00115 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47370 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.46500 * 65.00131 * 8 7 6 10 10 C 1.52996 * 109.47314 * 184.99828 * 8 7 6 11 11 O 1.42900 * 109.46993 * 55.00541 * 10 8 7 12 12 N 1.46901 * 109.47236 * 305.00500 * 8 7 6 13 13 C 1.46895 * 110.99816 * 154.99590 * 12 8 7 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 8 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46783 * 60.00161 * 21 19 17 23 23 H 1.48496 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46865 * 300.00343 * 21 19 17 25 25 C 1.52999 * 109.46895 * 239.99743 * 2 1 3 26 26 C 1.54265 * 110.03239 * 177.16849 * 25 2 1 27 27 C 1.54894 * 104.19627 * 217.11084 * 26 25 2 28 28 C 1.54886 * 102.75125 * 37.93981 * 27 26 25 29 29 C 1.53878 * 110.03354 * 60.00632 * 25 2 1 30 30 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47313 * 300.00255 * 1 2 3 32 32 H 1.09005 * 109.47243 * 60.00122 * 1 2 3 33 33 H 0.96999 * 120.00135 * 359.97438 * 6 4 2 34 34 H 1.09005 * 109.46798 * 59.99948 * 7 6 4 35 35 H 1.08994 * 109.47247 * 299.99955 * 7 6 4 36 36 H 1.09003 * 109.47323 * 175.00279 * 10 8 7 37 37 H 1.09002 * 109.47449 * 295.00609 * 10 8 7 38 38 H 0.96697 * 114.00205 * 179.97438 * 11 10 8 39 39 H 1.00902 * 110.99849 * 278.94969 * 12 8 7 40 40 H 1.09001 * 109.47613 * 60.00104 * 13 12 8 41 41 H 1.08998 * 109.47678 * 300.00000 * 13 12 8 42 42 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 43 43 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.02131 * 298.61126 * 25 2 1 45 45 H 1.09002 * 110.48808 * 335.78509 * 26 25 2 46 46 H 1.09000 * 110.48718 * 98.42995 * 26 25 2 47 47 H 1.09001 * 110.75309 * 279.62323 * 27 26 25 48 48 H 1.09002 * 110.91541 * 156.33152 * 27 26 25 49 49 H 1.08996 * 110.48408 * 203.38365 * 28 27 26 50 50 H 1.09003 * 110.59793 * 80.79259 * 28 27 26 51 51 H 1.09002 * 110.03480 * 238.57294 * 29 25 2 52 52 H 1.08999 * 110.03184 * 359.94354 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1954 -0.9404 3.6507 8 6 1.6858 -0.2188 4.9000 9 1 0.5995 -0.2958 4.9462 10 6 2.2963 -0.8636 6.1460 11 8 3.7206 -0.8670 6.0312 12 7 2.0743 1.1966 4.8407 13 6 1.1628 2.0265 5.6396 14 6 1.5923 3.4686 5.5553 15 8 2.5621 3.7749 4.8942 16 7 0.8954 4.4187 6.2095 17 6 1.2859 5.7306 6.1323 18 1 2.1522 6.0027 5.5477 19 6 0.5671 6.7103 6.8064 20 7 -0.4874 6.3792 7.5174 21 14 1.0995 8.4977 6.7019 22 1 1.0687 8.9413 5.2850 23 1 0.1742 9.3376 7.5041 24 1 2.4791 8.6352 7.2338 25 6 2.0399 -0.7213 -1.2492 26 6 3.5808 -0.6672 -1.2987 27 6 3.9068 -0.4939 -2.8030 28 6 2.7854 0.4579 -3.2883 29 6 1.5342 -0.0060 -2.5143 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.1493 0.5388 2.5436 34 1 3.2854 -0.9399 3.6505 35 1 1.8325 -1.9681 3.6508 36 1 2.0043 -0.2954 7.0292 37 1 1.9367 -1.8885 6.2380 38 1 4.1753 -1.2616 6.7879 39 1 3.0307 1.3218 5.1369 40 1 1.1907 1.6998 6.6791 41 1 0.1481 1.9262 5.2544 42 1 0.1171 4.1745 6.7343 43 1 -0.9890 7.0630 7.9882 44 1 1.7019 -1.7576 -1.2459 45 1 3.9512 0.1842 -0.7276 46 1 4.0075 -1.5961 -0.9204 47 1 3.8532 -1.4506 -3.3225 48 1 4.8870 -0.0368 -2.9386 49 1 2.6316 0.3499 -4.3619 50 1 3.0259 1.4917 -3.0403 51 1 0.9514 -0.6953 -3.1253 52 1 0.9247 0.8545 -2.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283818976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:28 Heat of formation + Delta-G solvation = -147.547592 kcal Electronic energy + Delta-G solvation = -30427.410010 eV Core-core repulsion = 26232.623696 eV Total energy + Delta-G solvation = -4194.786313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.18684 -38.78991 -37.96927 -37.48901 -35.41183 -34.13723 -33.75125 -33.20199 -31.27080 -30.03161 -28.83478 -27.67542 -26.21671 -26.00348 -24.05781 -23.60203 -20.90553 -20.67290 -20.34188 -19.40085 -19.23672 -18.01280 -17.62452 -17.24711 -16.43838 -15.89033 -15.55551 -15.47776 -15.28190 -15.04768 -14.67721 -14.52927 -14.24487 -13.84640 -13.76684 -13.59975 -13.41777 -13.28205 -13.15042 -12.93340 -12.39278 -12.31699 -12.07818 -11.81997 -11.64239 -11.54328 -11.49048 -11.31550 -11.20728 -11.08434 -11.04698 -10.98687 -10.71991 -10.61584 -10.46817 -10.45228 -10.25155 -10.18727 -9.53244 -9.52383 -8.82964 -8.52122 -8.12963 -7.99569 -6.45092 -3.85924 2.82606 3.17827 3.23762 3.28101 3.32364 3.86455 3.91765 4.13739 4.37881 4.43990 4.52005 4.58797 4.74823 4.83033 4.97072 4.99287 5.05083 5.11408 5.17692 5.20563 5.29528 5.32074 5.37059 5.46006 5.50706 5.54218 5.56891 5.63014 5.69306 5.70274 5.74857 5.80075 5.85032 5.90165 5.91152 6.01959 6.06347 6.09176 6.22172 6.22814 6.31244 6.42900 6.62796 7.11991 7.43629 7.51987 7.63767 7.73985 8.02663 8.42286 8.57618 9.14656 9.50463 10.01996 10.72524 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.002517 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.043714 B =11121.656802 C =13045.298134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 H 0.098 0.902 4 C 0.516 3.484 5 O -0.549 6.549 6 N -0.713 5.713 7 C 0.138 3.862 8 C 0.075 3.925 9 H 0.093 0.907 10 C 0.046 3.954 11 O -0.565 6.565 12 N -0.659 5.659 13 C 0.047 3.953 14 C 0.440 3.560 15 O -0.580 6.580 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.102 0.898 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C -0.069 4.069 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.126 4.126 29 C -0.123 4.123 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.408 0.592 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.380 0.620 39 H 0.363 0.637 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.060 0.940 50 H 0.065 0.935 51 H 0.062 0.938 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.147 -16.813 -10.800 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 H 0.117 0.883 4 C 0.302 3.698 5 O -0.427 6.427 6 N -0.364 5.364 7 C 0.013 3.987 8 C -0.036 4.036 9 H 0.111 0.889 10 C -0.034 4.034 11 O -0.370 6.370 12 N -0.292 5.292 13 C -0.085 4.085 14 C 0.225 3.775 15 O -0.464 6.464 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.088 4.088 26 C -0.150 4.150 27 C -0.165 4.165 28 C -0.163 4.163 29 C -0.160 4.160 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.227 0.773 39 H 0.184 0.816 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.081 0.919 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.403 -16.761 -12.348 20.822 hybrid contribution -0.292 0.717 2.096 2.235 sum 0.111 -16.044 -10.251 19.040 Atomic orbital electron populations 1.21837 0.93166 1.02453 1.02857 1.21469 0.97265 1.00999 0.93029 0.88350 1.20572 0.80019 0.84528 0.84656 1.90653 1.38234 1.26817 1.86951 1.45842 1.53461 1.32076 1.05025 1.21154 1.00490 0.94211 0.82800 1.21991 0.99551 0.89268 0.92833 0.88887 1.22844 0.82051 0.99893 0.98599 1.86498 1.18087 1.85028 1.47385 1.60135 1.07995 1.03083 1.58028 1.21757 0.97389 0.93529 0.95845 1.19770 0.86474 0.86380 0.84840 1.90545 1.29232 1.82279 1.44384 1.41852 1.27422 1.06640 1.44100 1.19651 1.12498 0.81853 1.28919 0.87979 1.25256 0.95763 1.00532 0.96337 1.69601 1.17961 1.35020 1.31797 0.85920 0.78362 0.81515 0.78456 1.19843 1.20977 1.19918 1.21542 0.95892 0.99252 0.92075 1.22377 0.94761 1.02504 0.95340 1.22532 0.98241 0.99217 0.96542 1.22362 0.95231 0.99482 0.99236 1.22288 0.97684 1.00132 0.95944 0.92315 0.91969 0.91264 0.75663 0.90504 0.91900 0.93052 0.93141 0.77314 0.81551 0.93976 0.89657 0.77518 0.91815 0.90631 0.91980 0.90755 0.91835 0.91874 0.92076 0.91645 0.91932 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.83 37.16 0.33 -0.95 16 2 C -0.11 -1.15 2.02 -91.77 -0.19 -1.33 16 3 H 0.10 1.08 8.12 -51.93 -0.42 0.65 16 4 C 0.52 6.93 6.90 -10.99 -0.08 6.86 16 5 O -0.55 -8.96 14.54 5.56 0.08 -8.88 16 6 N -0.71 -8.98 5.28 -60.29 -0.32 -9.30 16 7 C 0.14 1.72 5.26 -4.04 -0.02 1.70 16 8 C 0.07 0.85 2.57 -67.71 -0.17 0.68 16 9 H 0.09 0.91 7.80 -51.93 -0.40 0.51 16 10 C 0.05 0.45 6.72 37.16 0.25 0.70 16 11 O -0.56 -6.11 12.05 -35.23 -0.42 -6.54 16 12 N -0.66 -9.91 5.31 -107.99 -0.57 -10.48 16 13 C 0.05 0.77 5.96 -4.98 -0.03 0.74 16 14 C 0.44 9.99 7.82 -10.98 -0.09 9.90 16 15 O -0.58 -15.42 15.78 5.54 0.09 -15.33 16 16 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 17 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 18 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 21 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C -0.07 -0.72 2.11 -89.50 -0.19 -0.91 16 26 C -0.11 -1.28 5.18 -25.07 -0.13 -1.41 16 27 C -0.13 -1.20 6.91 -24.74 -0.17 -1.37 16 28 C -0.13 -1.08 6.83 -25.08 -0.17 -1.25 16 29 C -0.12 -1.06 5.91 -25.61 -0.15 -1.22 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.07 0.53 6.48 -51.93 -0.34 0.19 16 33 H 0.41 4.97 7.56 -40.82 -0.31 4.66 16 34 H 0.08 1.15 7.39 -51.93 -0.38 0.76 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.38 2.46 9.12 45.56 0.42 2.87 16 39 H 0.36 6.28 7.64 -39.29 -0.30 5.98 16 40 H 0.04 0.62 7.36 -51.93 -0.38 0.24 16 41 H 0.09 1.22 8.06 -51.93 -0.42 0.80 16 42 H 0.39 9.17 7.90 -40.82 -0.32 8.84 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 45 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 46 H 0.07 0.97 7.45 -51.93 -0.39 0.58 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.07 0.56 6.33 -51.93 -0.33 0.23 16 LS Contribution 413.01 15.07 6.22 6.22 Total: -1.00 -32.87 413.01 -8.40 -41.27 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -8.07 Total: 20.27 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -1.05 Total: 4.27 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.23 Total: -57.07 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.26 Total: -30.75 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.87 -8.40 -41.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283818976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.274 kcal (2) G-P(sol) polarization free energy of solvation -32.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds