Wall clock time and date at job start Wed Apr 1 2020 01:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47208 * 2 1 4 4 C 1.50697 * 109.47029 * 120.00446 * 2 1 3 5 5 O 1.21282 * 120.00369 * 119.99977 * 4 2 1 6 6 N 1.34779 * 119.99759 * 299.99824 * 4 2 1 7 7 C 1.46498 * 120.00115 * 180.02562 * 6 4 2 8 8 C 1.53003 * 109.47370 * 179.97438 * 7 6 4 9 9 H 1.09003 * 109.46500 * 65.00131 * 8 7 6 10 10 C 1.52996 * 109.47314 * 184.99828 * 8 7 6 11 11 O 1.42900 * 109.46993 * 55.00541 * 10 8 7 12 12 N 1.46901 * 109.47236 * 305.00500 * 8 7 6 13 13 C 1.46895 * 110.99816 * 154.99590 * 12 8 7 14 14 C 1.50706 * 109.47182 * 179.97438 * 13 12 8 15 15 O 1.21297 * 119.99667 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72734 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46783 * 60.00161 * 21 19 17 23 23 H 1.48496 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46865 * 300.00343 * 21 19 17 25 25 C 1.52999 * 109.46895 * 239.99743 * 2 1 3 26 26 C 1.54265 * 110.03239 * 177.16849 * 25 2 1 27 27 C 1.54894 * 104.19627 * 217.11084 * 26 25 2 28 28 C 1.54886 * 102.75125 * 37.93981 * 27 26 25 29 29 C 1.53878 * 110.03354 * 60.00632 * 25 2 1 30 30 H 1.08995 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47313 * 300.00255 * 1 2 3 32 32 H 1.09005 * 109.47243 * 60.00122 * 1 2 3 33 33 H 0.96999 * 120.00135 * 359.97438 * 6 4 2 34 34 H 1.09005 * 109.46798 * 59.99948 * 7 6 4 35 35 H 1.08994 * 109.47247 * 299.99955 * 7 6 4 36 36 H 1.09003 * 109.47323 * 175.00279 * 10 8 7 37 37 H 1.09002 * 109.47449 * 295.00609 * 10 8 7 38 38 H 0.96697 * 114.00205 * 179.97438 * 11 10 8 39 39 H 1.00902 * 110.99849 * 278.94969 * 12 8 7 40 40 H 1.09001 * 109.47613 * 60.00104 * 13 12 8 41 41 H 1.08998 * 109.47678 * 300.00000 * 13 12 8 42 42 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 43 43 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.02131 * 298.61126 * 25 2 1 45 45 H 1.09002 * 110.48808 * 335.78509 * 26 25 2 46 46 H 1.09000 * 110.48718 * 98.42995 * 26 25 2 47 47 H 1.09001 * 110.75309 * 279.62323 * 27 26 25 48 48 H 1.09002 * 110.91541 * 156.33152 * 27 26 25 49 49 H 1.08996 * 110.48408 * 203.38365 * 28 27 26 50 50 H 1.09003 * 110.59793 * 80.79259 * 28 27 26 51 51 H 1.09002 * 110.03480 * 238.57294 * 29 25 2 52 52 H 1.08999 * 110.03184 * 359.94354 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7296 -1.6966 1.1191 6 7 1.7067 -0.2501 2.4545 7 6 2.1954 -0.9404 3.6507 8 6 1.6858 -0.2188 4.9000 9 1 0.5995 -0.2958 4.9462 10 6 2.2963 -0.8636 6.1460 11 8 3.7206 -0.8670 6.0312 12 7 2.0743 1.1966 4.8407 13 6 1.1628 2.0265 5.6396 14 6 1.5923 3.4686 5.5553 15 8 2.5621 3.7749 4.8942 16 7 0.8954 4.4187 6.2095 17 6 1.2859 5.7306 6.1323 18 1 2.1522 6.0027 5.5477 19 6 0.5671 6.7103 6.8064 20 7 -0.4874 6.3792 7.5174 21 14 1.0995 8.4977 6.7019 22 1 1.0687 8.9413 5.2850 23 1 0.1742 9.3376 7.5041 24 1 2.4791 8.6352 7.2338 25 6 2.0399 -0.7213 -1.2492 26 6 3.5808 -0.6672 -1.2987 27 6 3.9068 -0.4939 -2.8030 28 6 2.7854 0.4579 -3.2883 29 6 1.5342 -0.0060 -2.5143 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.1493 0.5388 2.5436 34 1 3.2854 -0.9399 3.6505 35 1 1.8325 -1.9681 3.6508 36 1 2.0043 -0.2954 7.0292 37 1 1.9367 -1.8885 6.2380 38 1 4.1753 -1.2616 6.7879 39 1 3.0307 1.3218 5.1369 40 1 1.1907 1.6998 6.6791 41 1 0.1481 1.9262 5.2544 42 1 0.1171 4.1745 6.7343 43 1 -0.9890 7.0630 7.9882 44 1 1.7019 -1.7576 -1.2459 45 1 3.9512 0.1842 -0.7276 46 1 4.0075 -1.5961 -0.9204 47 1 3.8532 -1.4506 -3.3225 48 1 4.8870 -0.0368 -2.9386 49 1 2.6316 0.3499 -4.3619 50 1 3.0259 1.4917 -3.0403 51 1 0.9514 -0.6953 -3.1253 52 1 0.9247 0.8545 -2.2383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283818976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:27 Heat of formation + Delta-G solvation = -174.075201 kcal Electronic energy + Delta-G solvation = -30428.560333 eV Core-core repulsion = 26232.623696 eV Total energy + Delta-G solvation = -4195.936637 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19149 -40.24288 -39.16091 -38.48632 -36.43625 -35.92246 -34.98691 -34.13637 -33.24016 -31.15437 -29.62823 -28.46277 -27.81884 -26.87852 -25.65900 -24.53901 -21.87893 -21.50178 -21.26062 -21.10727 -20.15368 -19.90949 -18.58070 -18.22668 -17.75324 -17.13304 -16.78643 -16.52678 -16.39875 -16.23893 -15.93098 -15.88018 -15.54796 -15.19359 -15.02773 -14.60584 -14.41015 -14.19441 -14.07775 -13.99078 -13.75802 -13.51409 -13.28655 -13.11692 -12.94835 -12.88627 -12.59087 -12.42245 -12.37624 -12.25969 -12.12341 -12.02260 -11.83915 -11.79035 -11.53449 -11.49183 -11.43849 -11.23008 -10.95927 -10.58948 -10.33113 -9.99839 -9.91086 -9.33402 -8.45738 -5.93841 1.40055 1.42339 1.52584 1.76131 2.08005 2.28934 2.34704 2.86099 3.21965 3.34514 3.61508 3.66458 3.72655 3.76563 3.84227 3.98686 4.10687 4.25317 4.27098 4.30512 4.35699 4.44516 4.50112 4.55092 4.59777 4.62157 4.69473 4.72407 4.76992 4.79043 4.83702 4.88064 4.92024 5.02407 5.05119 5.11415 5.16223 5.25857 5.31239 5.41998 5.43201 5.51488 5.57488 5.59376 5.90096 6.11015 6.33491 6.62087 6.69653 6.88423 7.14600 7.37519 7.58716 8.14714 8.71271 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009777 B = 0.002517 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2863.043714 B =11121.656802 C =13045.298134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.096 0.904 4 C 0.510 3.490 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.143 3.857 8 C 0.079 3.921 9 H 0.119 0.881 10 C 0.048 3.952 11 O -0.589 6.589 12 N -0.670 5.670 13 C 0.064 3.936 14 C 0.438 3.562 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.919 5.919 21 Si 0.989 3.011 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.274 1.274 25 C -0.067 4.067 26 C -0.114 4.114 27 C -0.125 4.125 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.411 0.589 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.348 0.652 40 H 0.066 0.934 41 H 0.114 0.886 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.062 0.938 51 H 0.075 0.925 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.868 -17.025 -10.986 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 H 0.115 0.885 4 C 0.297 3.703 5 O -0.463 6.463 6 N -0.359 5.359 7 C 0.018 3.982 8 C -0.031 4.031 9 H 0.137 0.863 10 C -0.032 4.032 11 O -0.398 6.398 12 N -0.302 5.302 13 C -0.068 4.068 14 C 0.225 3.775 15 O -0.510 6.510 16 N -0.210 5.210 17 C -0.462 4.462 18 H 0.095 0.905 19 C -0.211 4.211 20 N -0.560 5.560 21 Si 0.813 3.187 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.199 1.199 25 C -0.086 4.086 26 C -0.152 4.152 27 C -0.163 4.163 28 C -0.162 4.162 29 C -0.156 4.156 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.247 0.753 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.247 0.753 39 H 0.168 0.832 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.081 0.919 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.352 -16.991 -12.504 21.140 hybrid contribution 0.314 0.701 2.165 2.297 sum -1.038 -16.290 -10.339 19.322 Atomic orbital electron populations 1.21826 0.91219 1.02851 1.03886 1.21489 0.98800 1.00315 0.91817 0.88548 1.21108 0.79410 0.84193 0.85584 1.90636 1.39769 1.28480 1.87457 1.45874 1.53056 1.31976 1.05020 1.21098 0.98778 0.94991 0.83344 1.22082 1.01075 0.86949 0.93032 0.86317 1.22846 0.81582 1.01254 0.97484 1.86466 1.18941 1.85507 1.48844 1.60088 1.06903 1.05228 1.58022 1.21627 0.98475 0.88952 0.97764 1.20916 0.85113 0.88671 0.82752 1.90518 1.31037 1.83642 1.45823 1.41907 1.27977 1.06275 1.44862 1.19590 1.12710 0.83811 1.30131 0.90543 1.25973 0.95600 1.03944 0.95578 1.69654 1.18289 1.36270 1.31812 0.85045 0.78103 0.77050 0.78507 1.19727 1.19496 1.19925 1.21521 0.94987 0.98988 0.93060 1.22327 0.95728 1.00492 0.96645 1.22527 0.98885 0.99964 0.94906 1.22372 0.94637 0.98971 1.00180 1.22275 0.97866 1.00486 0.94927 0.92205 0.91594 0.89593 0.75263 0.93450 0.90918 0.92556 0.90581 0.75335 0.83249 0.91574 0.86854 0.76916 0.91326 0.91620 0.93647 0.93102 0.91162 0.91662 0.90462 0.91886 0.90637 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.83 71.98 0.64 -1.60 16 2 C -0.10 -2.18 2.02 -11.54 -0.02 -2.21 16 3 H 0.10 2.09 8.12 -2.39 -0.02 2.07 16 4 C 0.51 13.86 6.90 87.66 0.61 14.47 16 5 O -0.58 -19.72 14.54 -3.04 -0.04 -19.76 16 6 N -0.71 -17.60 5.28 -463.06 -2.45 -20.05 16 7 C 0.14 3.47 5.26 86.38 0.45 3.92 16 8 C 0.08 1.63 2.57 44.91 0.12 1.75 16 9 H 0.12 1.89 7.80 -2.39 -0.02 1.87 16 10 C 0.05 0.83 6.72 71.98 0.48 1.31 16 11 O -0.59 -12.23 12.05 -148.98 -1.80 -14.03 16 12 N -0.67 -19.42 5.31 -495.57 -2.63 -22.06 16 13 C 0.06 1.95 5.96 85.56 0.51 2.46 16 14 C 0.44 19.85 7.82 87.66 0.69 20.54 16 15 O -0.62 -33.86 15.78 -3.08 -0.05 -33.91 16 16 N -0.57 -28.26 5.29 -306.98 -1.62 -29.89 16 17 C -0.33 -18.53 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 19 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 20 N -0.92 -48.45 13.05 21.66 0.28 -48.16 16 21 Si 0.99 42.33 29.55 68.60 2.03 44.36 16 22 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 23 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 C -0.07 -1.38 2.11 -10.07 -0.02 -1.40 16 26 C -0.11 -2.72 5.18 31.67 0.16 -2.55 16 27 C -0.13 -2.31 6.91 31.89 0.22 -2.09 16 28 C -0.12 -1.95 6.83 31.67 0.22 -1.73 16 29 C -0.12 -1.84 5.91 31.32 0.19 -1.66 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 1.01 7.57 -2.39 -0.02 0.99 16 32 H 0.09 1.10 6.48 -2.38 -0.02 1.08 16 33 H 0.41 9.63 7.56 -92.71 -0.70 8.93 16 34 H 0.05 1.45 7.39 -2.38 -0.02 1.43 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 0.93 7.35 -2.39 -0.02 0.92 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.40 4.72 9.12 -74.06 -0.68 4.04 16 39 H 0.35 12.03 7.64 -89.69 -0.69 11.34 16 40 H 0.07 1.75 7.36 -2.39 -0.02 1.73 16 41 H 0.11 2.88 8.06 -2.39 -0.02 2.86 16 42 H 0.40 18.41 7.90 -92.71 -0.73 17.68 16 43 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 44 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 45 H 0.04 1.20 7.84 -2.39 -0.02 1.18 16 46 H 0.05 1.42 7.45 -2.39 -0.02 1.40 16 47 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 49 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 52 H 0.08 1.08 6.33 -2.39 -0.02 1.07 16 Total: -1.00 -73.13 413.01 -2.60 -75.73 By element: Atomic # 1 Polarization: 56.22 SS G_CDS: -1.83 Total: 54.39 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 5.51 Total: 13.38 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -6.42 Total: -120.15 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -1.89 Total: -67.70 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.13 -2.60 -75.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283818976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.344 kcal (2) G-P(sol) polarization free energy of solvation -73.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds