Wall clock time and date at job start Wed Apr 1 2020 00:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46756 * 2 1 4 4 O 1.42895 * 109.47270 * 119.99444 * 2 1 3 5 5 C 1.42907 * 113.99578 * 90.00308 * 4 2 1 6 6 C 1.50703 * 109.46889 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99989 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.48144 * 127.83609 * 359.97438 * 8 6 5 10 10 C 1.54386 * 104.61814 * 219.60144 * 9 8 6 11 11 H 1.09000 * 110.42913 * 95.04744 * 10 9 8 12 12 N 1.46897 * 110.34814 * 217.26466 * 10 9 8 13 13 C 1.46900 * 111.00083 * 279.83426 * 12 10 9 14 14 C 1.50698 * 109.47155 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00030 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99499 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99383 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00138 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99614 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00133 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47495 * 59.99738 * 21 19 17 23 23 H 1.48497 * 109.47205 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47059 * 299.99570 * 21 19 17 25 25 C 1.54288 * 104.95942 * 336.13603 * 10 9 8 26 26 C 1.53002 * 110.34160 * 118.86734 * 25 10 9 27 27 C 1.53002 * 110.34330 * 241.12683 * 25 10 9 28 28 C 1.48141 * 127.83534 * 179.97438 * 8 6 5 29 29 H 1.08995 * 109.46952 * 60.00200 * 1 2 3 30 30 H 1.09001 * 109.46435 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46785 * 299.99913 * 1 2 3 32 32 H 1.08995 * 109.47482 * 240.00350 * 2 1 3 33 33 H 1.09007 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47326 * 299.99589 * 3 2 1 35 35 H 1.09000 * 109.47504 * 59.99702 * 3 2 1 36 36 H 1.09001 * 109.47282 * 60.00360 * 5 4 2 37 37 H 1.08990 * 109.47434 * 299.99922 * 5 4 2 38 38 H 1.09001 * 110.40557 * 100.81716 * 9 8 6 39 39 H 1.09000 * 110.40797 * 338.38941 * 9 8 6 40 40 H 1.00895 * 111.00318 * 155.87765 * 12 10 9 41 41 H 1.09007 * 109.46995 * 59.99484 * 13 12 10 42 42 H 1.09000 * 109.47095 * 300.00167 * 13 12 10 43 43 H 0.96995 * 120.00600 * 0.02562 * 16 14 13 44 44 H 0.96998 * 119.99868 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.47043 * 60.00552 * 26 25 10 46 46 H 1.09006 * 109.46842 * 179.97438 * 26 25 10 47 47 H 1.08995 * 109.47449 * 299.99490 * 26 25 10 48 48 H 1.08993 * 109.47057 * 53.72872 * 27 25 10 49 49 H 1.09003 * 109.46917 * 173.73336 * 27 25 10 50 50 H 1.08997 * 109.46744 * 293.73164 * 27 25 10 51 51 H 1.08999 * 110.40926 * 21.61707 * 28 8 6 52 52 H 1.09003 * 110.51030 * 259.22812 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2002 -2.0781 0.9886 6 6 2.7016 -2.6831 2.2746 7 8 2.8753 -1.9807 3.2479 8 7 2.9559 -4.0049 2.3434 9 6 2.8048 -5.0163 1.2715 10 6 2.2337 -6.2596 1.9866 11 1 1.1469 -6.2794 1.9056 12 7 2.8098 -7.4855 1.4181 13 6 2.1364 -7.8516 0.1649 14 6 2.7533 -9.1105 -0.3877 15 8 3.6640 -9.6500 0.2044 16 7 2.2923 -9.6375 -1.5394 17 6 2.8533 -10.7832 -2.0418 18 1 3.6642 -11.2636 -1.5145 19 6 2.3784 -11.3262 -3.2294 20 7 1.3920 -10.7414 -3.8712 21 14 3.1422 -12.8875 -3.9136 22 1 2.9864 -13.9878 -2.9285 23 1 2.4612 -13.2578 -5.1802 24 1 4.5858 -12.6586 -4.1759 25 6 2.6587 -6.1011 3.4613 26 6 1.4262 -6.0171 4.3640 27 6 3.5518 -7.2687 3.8859 28 6 3.4499 -4.7758 3.5079 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 2.9321 -2.2466 0.1987 37 1 1.2540 -2.5433 0.7125 38 1 3.7729 -5.2453 0.8259 39 1 2.1093 -4.6625 0.5104 40 1 2.7740 -8.2438 2.0827 41 1 2.2502 -7.0438 -0.5581 42 1 1.0768 -8.0200 0.3576 43 1 1.5638 -9.2063 -2.0127 44 1 1.0603 -11.1207 -4.7000 45 1 0.8368 -6.9281 4.2599 46 1 1.7424 -5.9060 5.4012 47 1 0.8214 -5.1579 4.0742 48 1 4.3865 -7.3591 3.1908 49 1 3.9336 -7.0874 4.8906 50 1 2.9714 -8.1913 3.8787 51 1 3.2410 -4.2408 4.4343 52 1 4.5187 -4.9676 3.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284257155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:32 Heat of formation + Delta-G solvation = -111.236445 kcal Electronic energy + Delta-G solvation = -30471.973934 eV Core-core repulsion = 26278.762191 eV Total energy + Delta-G solvation = -4193.211744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.59557 -39.13041 -38.24030 -37.74686 -34.74012 -33.96561 -33.52883 -33.03923 -31.26624 -29.05769 -28.72106 -27.64639 -27.54731 -26.16122 -25.64330 -24.20807 -22.19919 -21.66381 -19.89773 -19.28850 -18.94833 -17.93249 -17.50061 -16.89009 -16.52014 -16.14154 -15.95537 -15.47845 -15.40121 -14.82580 -14.68703 -14.42147 -14.19960 -13.98806 -13.91019 -13.61397 -13.40626 -13.10041 -12.97293 -12.86401 -12.58472 -12.54554 -12.38438 -12.20082 -12.19401 -11.94578 -11.77435 -11.71943 -11.58149 -11.52923 -11.08550 -11.08084 -10.95522 -10.89865 -10.66472 -10.47979 -10.25725 -10.00274 -9.91969 -9.54665 -8.91233 -8.52703 -8.17844 -8.01331 -6.46425 -3.87362 2.41076 2.42853 3.16665 3.22932 3.27019 3.51680 3.84977 4.02177 4.13924 4.24286 4.39288 4.47022 4.61173 4.66272 4.71393 4.79995 4.83987 4.91994 5.00235 5.06015 5.13032 5.18776 5.25531 5.25893 5.33947 5.42541 5.45445 5.48718 5.49681 5.55193 5.59578 5.66356 5.70934 5.77494 5.82812 5.84409 5.86933 5.87047 5.90846 6.05380 6.09669 6.20889 6.36541 6.80564 7.11832 7.33512 7.50606 7.54089 7.98606 8.01058 8.55854 9.13004 9.48961 10.00018 10.71149 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.002356 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.807448 B =11879.179434 C =13866.725643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.359 6.359 5 C 0.048 3.952 6 C 0.537 3.463 7 O -0.524 6.524 8 N -0.622 5.622 9 C 0.105 3.895 10 C 0.080 3.920 11 H 0.055 0.945 12 N -0.658 5.658 13 C 0.047 3.953 14 C 0.440 3.560 15 O -0.583 6.583 16 N -0.563 5.563 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.077 4.077 26 C -0.138 4.138 27 C -0.139 4.139 28 C 0.121 3.879 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.358 0.642 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.060 0.940 51 H 0.082 0.918 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 17.891 8.661 20.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.277 6.277 5 C -0.031 4.031 6 C 0.325 3.675 7 O -0.399 6.399 8 N -0.358 5.358 9 C -0.019 4.019 10 C -0.032 4.032 11 H 0.073 0.927 12 N -0.295 5.295 13 C -0.086 4.086 14 C 0.226 3.774 15 O -0.467 6.467 16 N -0.199 5.199 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.079 4.079 26 C -0.195 4.195 27 C -0.197 4.197 28 C -0.002 4.002 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.182 0.818 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.079 0.921 51 H 0.101 0.899 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.044 18.401 9.250 20.697 hybrid contribution -1.186 -1.097 -0.876 1.838 sum -3.230 17.304 8.374 19.493 Atomic orbital electron populations 1.22315 0.95763 1.02509 1.02798 1.22190 0.93851 0.94044 0.87860 1.21853 1.01963 0.94191 1.02617 1.88046 1.86627 1.17675 1.35388 1.22189 1.01269 0.84003 0.95683 1.19792 0.77813 0.80148 0.89737 1.90727 1.51898 1.59413 1.37860 1.48820 1.66065 1.05992 1.14935 1.22599 1.02556 0.86945 0.89764 1.22442 0.96740 0.91090 0.92900 0.92721 1.60319 1.56512 1.06171 1.06460 1.21752 0.95788 0.98003 0.93047 1.19762 0.86884 0.87075 0.83717 1.90525 1.31878 1.63563 1.60730 1.41859 1.33162 1.24482 1.20437 1.19651 1.16721 1.01318 1.05272 0.87946 1.25262 0.96481 0.99637 0.96513 1.69598 1.26279 1.40686 1.17748 0.85919 0.79094 0.81231 0.77997 1.19906 1.20979 1.19852 1.21601 0.96307 0.95642 0.94310 1.21888 0.96639 1.01839 0.99180 1.21781 1.00216 0.96265 1.01437 1.22433 0.98138 0.90007 0.89595 0.91421 0.92432 0.91607 0.91885 0.91861 0.91084 0.91630 0.90127 0.90339 0.88968 0.90641 0.81816 0.89711 0.93779 0.77485 0.91791 0.92293 0.92122 0.92655 0.90031 0.92561 0.92090 0.89941 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 9.53 37.16 0.35 -0.91 16 2 C 0.08 0.65 3.34 -26.73 -0.09 0.56 16 3 C -0.15 -1.08 9.56 37.16 0.36 -0.72 16 4 O -0.36 -4.20 9.52 -55.14 -0.52 -4.72 16 5 C 0.05 0.49 5.21 36.01 0.19 0.67 16 6 C 0.54 6.94 7.99 -10.98 -0.09 6.85 16 7 O -0.52 -8.87 16.77 -14.35 -0.24 -9.11 16 8 N -0.62 -7.01 3.32 -169.29 -0.56 -7.57 16 9 C 0.10 1.08 6.23 -2.41 -0.02 1.06 16 10 C 0.08 0.87 3.00 -66.31 -0.20 0.67 16 11 H 0.05 0.58 7.53 -51.93 -0.39 0.19 16 12 N -0.66 -9.20 4.95 -106.51 -0.53 -9.73 16 13 C 0.05 0.74 6.01 -4.98 -0.03 0.71 16 14 C 0.44 9.75 7.82 -10.98 -0.09 9.66 16 15 O -0.58 -14.97 15.78 5.55 0.09 -14.89 16 16 N -0.56 -13.63 5.29 -10.96 -0.06 -13.69 16 17 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 18 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -23.88 13.05 55.50 0.72 -23.16 16 21 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 22 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.08 -0.77 1.03 -153.09 -0.16 -0.93 16 26 C -0.14 -1.26 8.24 37.16 0.31 -0.96 16 27 C -0.14 -1.41 7.15 37.16 0.27 -1.14 16 28 C 0.12 1.30 6.14 -2.39 -0.01 1.29 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.43 7.79 -51.93 -0.40 0.03 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.08 0.64 7.68 -51.93 -0.40 0.24 16 38 H 0.09 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.08 0.64 7.30 -51.93 -0.38 0.26 16 40 H 0.36 5.27 5.89 -39.29 -0.23 5.04 16 41 H 0.08 1.20 7.87 -51.92 -0.41 0.79 16 42 H 0.04 0.63 8.09 -51.93 -0.42 0.21 16 43 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 44 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.96 7.54 -51.93 -0.39 0.57 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.06 0.63 7.06 -51.93 -0.37 0.26 16 51 H 0.08 0.93 7.60 -51.93 -0.39 0.54 16 52 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 LS Contribution 418.83 15.07 6.31 6.31 Total: -1.00 -32.90 418.83 -8.34 -41.24 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -9.08 Total: 10.72 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 0.55 Total: 9.05 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.42 Total: -54.15 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.68 Total: -28.72 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.90 -8.34 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284257155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.995 kcal (2) G-P(sol) polarization free energy of solvation -32.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds