Wall clock time and date at job start Wed Apr 1 2020 00:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46756 * 2 1 4 4 O 1.42895 * 109.47270 * 119.99444 * 2 1 3 5 5 C 1.42907 * 113.99578 * 90.00308 * 4 2 1 6 6 C 1.50703 * 109.46889 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99989 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99864 * 179.97438 * 6 5 4 9 9 C 1.48144 * 127.83609 * 359.97438 * 8 6 5 10 10 C 1.54386 * 104.61814 * 219.60144 * 9 8 6 11 11 H 1.09000 * 110.42913 * 95.04744 * 10 9 8 12 12 N 1.46897 * 110.34814 * 217.26466 * 10 9 8 13 13 C 1.46900 * 111.00083 * 279.83426 * 12 10 9 14 14 C 1.50698 * 109.47155 * 179.97438 * 13 12 10 15 15 O 1.21284 * 120.00030 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99499 * 179.97438 * 14 13 12 17 17 C 1.37100 * 119.99383 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00138 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99614 * 180.02562 * 17 16 14 20 20 N 1.31411 * 120.00133 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99810 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47495 * 59.99738 * 21 19 17 23 23 H 1.48497 * 109.47205 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47059 * 299.99570 * 21 19 17 25 25 C 1.54288 * 104.95942 * 336.13603 * 10 9 8 26 26 C 1.53002 * 110.34160 * 118.86734 * 25 10 9 27 27 C 1.53002 * 110.34330 * 241.12683 * 25 10 9 28 28 C 1.48141 * 127.83534 * 179.97438 * 8 6 5 29 29 H 1.08995 * 109.46952 * 60.00200 * 1 2 3 30 30 H 1.09001 * 109.46435 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46785 * 299.99913 * 1 2 3 32 32 H 1.08995 * 109.47482 * 240.00350 * 2 1 3 33 33 H 1.09007 * 109.46924 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47326 * 299.99589 * 3 2 1 35 35 H 1.09000 * 109.47504 * 59.99702 * 3 2 1 36 36 H 1.09001 * 109.47282 * 60.00360 * 5 4 2 37 37 H 1.08990 * 109.47434 * 299.99922 * 5 4 2 38 38 H 1.09001 * 110.40557 * 100.81716 * 9 8 6 39 39 H 1.09000 * 110.40797 * 338.38941 * 9 8 6 40 40 H 1.00895 * 111.00318 * 155.87765 * 12 10 9 41 41 H 1.09007 * 109.46995 * 59.99484 * 13 12 10 42 42 H 1.09000 * 109.47095 * 300.00167 * 13 12 10 43 43 H 0.96995 * 120.00600 * 0.02562 * 16 14 13 44 44 H 0.96998 * 119.99868 * 180.02562 * 20 19 17 45 45 H 1.09002 * 109.47043 * 60.00552 * 26 25 10 46 46 H 1.09006 * 109.46842 * 179.97438 * 26 25 10 47 47 H 1.08995 * 109.47449 * 299.99490 * 26 25 10 48 48 H 1.08993 * 109.47057 * 53.72872 * 27 25 10 49 49 H 1.09003 * 109.46917 * 173.73336 * 27 25 10 50 50 H 1.08997 * 109.46744 * 293.73164 * 27 25 10 51 51 H 1.08999 * 110.40926 * 21.61707 * 28 8 6 52 52 H 1.09003 * 110.51030 * 259.22812 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 2.2002 -2.0781 0.9886 6 6 2.7016 -2.6831 2.2746 7 8 2.8753 -1.9807 3.2479 8 7 2.9559 -4.0049 2.3434 9 6 2.8048 -5.0163 1.2715 10 6 2.2337 -6.2596 1.9866 11 1 1.1469 -6.2794 1.9056 12 7 2.8098 -7.4855 1.4181 13 6 2.1364 -7.8516 0.1649 14 6 2.7533 -9.1105 -0.3877 15 8 3.6640 -9.6500 0.2044 16 7 2.2923 -9.6375 -1.5394 17 6 2.8533 -10.7832 -2.0418 18 1 3.6642 -11.2636 -1.5145 19 6 2.3784 -11.3262 -3.2294 20 7 1.3920 -10.7414 -3.8712 21 14 3.1422 -12.8875 -3.9136 22 1 2.9864 -13.9878 -2.9285 23 1 2.4612 -13.2578 -5.1802 24 1 4.5858 -12.6586 -4.1759 25 6 2.6587 -6.1011 3.4613 26 6 1.4262 -6.0171 4.3640 27 6 3.5518 -7.2687 3.8859 28 6 3.4499 -4.7758 3.5079 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9565 0.8899 36 1 2.9321 -2.2466 0.1987 37 1 1.2540 -2.5433 0.7125 38 1 3.7729 -5.2453 0.8259 39 1 2.1093 -4.6625 0.5104 40 1 2.7740 -8.2438 2.0827 41 1 2.2502 -7.0438 -0.5581 42 1 1.0768 -8.0200 0.3576 43 1 1.5638 -9.2063 -2.0127 44 1 1.0603 -11.1207 -4.7000 45 1 0.8368 -6.9281 4.2599 46 1 1.7424 -5.9060 5.4012 47 1 0.8214 -5.1579 4.0742 48 1 4.3865 -7.3591 3.1908 49 1 3.9336 -7.0874 4.8906 50 1 2.9714 -8.1913 3.8787 51 1 3.2410 -4.2408 4.4343 52 1 4.5187 -4.9676 3.4134 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284257155.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:31 Heat of formation + Delta-G solvation = -133.631082 kcal Electronic energy + Delta-G solvation = -30472.945039 eV Core-core repulsion = 26278.762191 eV Total energy + Delta-G solvation = -4194.182848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52303 -40.21968 -39.67657 -38.71721 -36.14918 -35.51665 -34.57543 -33.68508 -33.20709 -30.05596 -29.64725 -28.52477 -28.09923 -27.55500 -26.46591 -25.79579 -23.19396 -22.26845 -21.16477 -20.57807 -19.95853 -19.80216 -18.35437 -17.77063 -17.62390 -17.30155 -16.89242 -16.80479 -16.36349 -16.31601 -15.85462 -15.51195 -15.37854 -15.27984 -15.02703 -14.49346 -14.39912 -14.20150 -13.93973 -13.70008 -13.56198 -13.48320 -13.40736 -13.23275 -13.05694 -12.95632 -12.89234 -12.77802 -12.71582 -12.49844 -12.40037 -12.37122 -12.11657 -11.84793 -11.79055 -11.66025 -11.50098 -11.46673 -10.94056 -10.67292 -10.28852 -9.97762 -9.85927 -9.31390 -8.43921 -5.91778 1.41508 1.43877 1.46951 1.53820 1.57080 2.10429 2.30969 2.74780 2.99291 3.24215 3.30815 3.50509 3.57745 3.68994 3.88173 4.00091 4.06495 4.13509 4.22817 4.24055 4.28113 4.29965 4.33630 4.36822 4.52967 4.58701 4.61832 4.71481 4.73078 4.75253 4.78297 4.81016 4.90187 4.90710 4.93197 4.94361 5.03218 5.08180 5.21689 5.28526 5.29983 5.32679 5.44086 5.50531 5.92429 6.13536 6.14476 6.38905 6.45135 6.64008 7.03449 7.16471 7.61232 8.16526 8.73128 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011035 B = 0.002356 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2536.807448 B =11879.179434 C =13866.725643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.070 3.930 3 C -0.149 4.149 4 O -0.391 6.391 5 C 0.050 3.950 6 C 0.532 3.468 7 O -0.574 6.574 8 N -0.617 5.617 9 C 0.106 3.894 10 C 0.082 3.918 11 H 0.068 0.932 12 N -0.667 5.667 13 C 0.061 3.939 14 C 0.439 3.561 15 O -0.622 6.622 16 N -0.574 5.574 17 C -0.331 4.331 18 H 0.079 0.921 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.989 3.011 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.273 1.273 25 C -0.070 4.070 26 C -0.134 4.134 27 C -0.134 4.134 28 C 0.117 3.883 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.353 0.647 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.397 0.603 44 H 0.277 0.723 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.074 0.926 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.226 18.232 7.646 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.014 3.986 3 C -0.206 4.206 4 O -0.311 6.311 5 C -0.029 4.029 6 C 0.322 3.678 7 O -0.453 6.453 8 N -0.352 5.352 9 C -0.017 4.017 10 C -0.029 4.029 11 H 0.086 0.914 12 N -0.303 5.303 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.508 6.508 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.097 0.903 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.813 3.187 22 H -0.198 1.198 23 H -0.197 1.197 24 H -0.198 1.198 25 C -0.071 4.071 26 C -0.191 4.191 27 C -0.192 4.192 28 C -0.005 4.005 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.120 0.880 40 H 0.176 0.824 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.231 0.769 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.115 18.745 8.217 20.703 hybrid contribution -0.821 -1.173 -0.495 1.515 sum -3.936 17.572 7.722 19.593 Atomic orbital electron populations 1.22301 0.95018 1.02718 1.03090 1.22433 0.94503 0.94246 0.87454 1.21887 1.01568 0.94010 1.03164 1.88019 1.87097 1.18546 1.37397 1.22289 1.02822 0.83543 0.94253 1.20410 0.77032 0.80178 0.90226 1.90699 1.54231 1.60564 1.39762 1.48847 1.65145 1.05874 1.15288 1.22656 1.02881 0.86327 0.89838 1.22491 0.97329 0.89824 0.93230 0.91382 1.60310 1.57072 1.06951 1.05961 1.21627 0.96331 0.95079 0.94064 1.20891 0.85799 0.88178 0.82444 1.90500 1.33609 1.65170 1.61548 1.41927 1.33599 1.24259 1.21388 1.19603 1.17232 1.03016 1.06236 0.90348 1.25975 0.96760 1.02181 0.96300 1.69653 1.26767 1.41685 1.18010 0.85045 0.78283 0.77759 0.77618 1.19793 1.19682 1.19809 1.21542 0.96512 0.94916 0.94117 1.21846 0.96047 1.01868 0.99333 1.21710 0.99546 0.96250 1.01705 1.22471 0.98320 0.90296 0.89424 0.89598 0.92251 0.92838 0.90152 0.92514 0.88844 0.92764 0.88029 0.87984 0.89727 0.87980 0.82372 0.87308 0.91460 0.76943 0.91381 0.91716 0.91453 0.93105 0.91877 0.91275 0.92263 0.90701 0.90532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.53 71.98 0.69 -1.49 16 2 C 0.07 1.04 3.34 30.60 0.10 1.14 16 3 C -0.15 -1.99 9.56 71.98 0.69 -1.30 16 4 O -0.39 -8.77 9.52 -129.94 -1.24 -10.00 16 5 C 0.05 0.91 5.21 71.24 0.37 1.28 16 6 C 0.53 13.27 7.99 87.66 0.70 13.97 16 7 O -0.57 -19.66 16.77 16.01 0.27 -19.40 16 8 N -0.62 -13.03 3.32 -807.90 -2.68 -15.71 16 9 C 0.11 1.91 6.23 86.53 0.54 2.45 16 10 C 0.08 1.60 3.00 45.82 0.14 1.73 16 11 H 0.07 1.21 7.53 -2.39 -0.02 1.19 16 12 N -0.67 -17.48 4.95 -490.89 -2.43 -19.91 16 13 C 0.06 1.79 6.01 85.56 0.51 2.30 16 14 C 0.44 19.23 7.82 87.66 0.69 19.92 16 15 O -0.62 -32.28 15.78 -3.04 -0.05 -32.33 16 16 N -0.57 -27.76 5.29 -306.98 -1.62 -29.38 16 17 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 18 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 19 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 20 N -0.92 -48.05 13.05 21.66 0.28 -47.76 16 21 Si 0.99 41.77 29.55 68.60 2.03 43.80 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 25 C -0.07 -1.29 1.03 -51.26 -0.05 -1.34 16 26 C -0.13 -2.21 8.24 71.98 0.59 -1.61 16 27 C -0.13 -2.59 7.15 71.98 0.51 -2.08 16 28 C 0.12 2.44 6.14 86.55 0.53 2.97 16 29 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.06 0.71 7.87 -2.39 -0.02 0.69 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.89 7.79 -2.39 -0.02 0.87 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 37 H 0.10 1.33 7.68 -2.39 -0.02 1.32 16 38 H 0.08 1.72 8.06 -2.39 -0.02 1.70 16 39 H 0.10 1.32 7.30 -2.39 -0.02 1.30 16 40 H 0.35 10.00 5.89 -89.70 -0.53 9.47 16 41 H 0.11 2.70 7.87 -2.38 -0.02 2.68 16 42 H 0.07 1.70 8.09 -2.39 -0.02 1.68 16 43 H 0.40 18.09 7.90 -92.71 -0.73 17.36 16 44 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 47 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 1.47 7.54 -2.39 -0.02 1.45 16 49 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 1.17 7.06 -2.39 -0.02 1.15 16 51 H 0.07 1.69 7.60 -2.39 -0.02 1.67 16 52 H 0.08 1.60 7.86 -2.39 -0.02 1.58 16 Total: -1.00 -72.56 418.83 1.51 -71.05 By element: Atomic # 1 Polarization: 39.50 SS G_CDS: -0.34 Total: 39.15 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 7.29 Total: 20.49 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -6.45 Total: -112.76 kcal Atomic # 8 Polarization: -60.71 SS G_CDS: -1.02 Total: -61.73 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -72.56 1.51 -71.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284257155.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.580 kcal (2) G-P(sol) polarization free energy of solvation -72.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds