Wall clock time and date at job start Wed Apr 1 2020 00:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50708 * 109.46868 * 2 1 4 4 O 1.21285 * 119.99841 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99942 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63266 * 355.97028 * 5 3 2 7 7 C 1.53194 * 108.77448 * 233.58614 * 6 5 3 8 8 C 1.53040 * 109.31388 * 305.36218 * 7 6 5 9 9 C 1.53041 * 109.53621 * 61.36354 * 8 7 6 10 10 C 1.46927 * 120.63008 * 175.94557 * 5 3 2 11 11 H 1.08995 * 109.70591 * 246.27161 * 10 5 3 12 12 C 1.50705 * 109.58682 * 6.62693 * 10 5 3 13 13 O 1.21278 * 119.99809 * 67.08028 * 12 10 5 14 14 N 1.34772 * 119.99855 * 247.08040 * 12 10 5 15 15 C 1.46500 * 120.00244 * 355.33314 * 14 12 10 16 16 C 1.46504 * 120.00090 * 175.33006 * 14 12 10 17 17 C 1.52992 * 109.47039 * 89.99740 * 16 14 12 18 18 H 1.09003 * 109.47164 * 60.00237 * 17 16 14 19 19 O 1.42905 * 109.47752 * 300.00393 * 17 16 14 20 20 C 1.53002 * 109.47252 * 180.02562 * 17 16 14 21 21 N 1.46497 * 109.47489 * 185.00078 * 20 17 16 22 22 C 1.36941 * 120.00293 * 179.97438 * 21 20 17 23 23 H 1.07997 * 119.99480 * 359.97438 * 22 21 20 24 24 C 1.38811 * 119.99986 * 180.02562 * 22 21 20 25 25 N 1.31624 * 120.00168 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99947 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47075 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47248 * 119.99952 * 26 24 22 29 29 H 1.48505 * 109.47177 * 240.00176 * 26 24 22 30 30 H 1.08998 * 109.47045 * 299.99625 * 1 2 3 31 31 H 1.08997 * 109.46726 * 60.00073 * 1 2 3 32 32 H 1.09000 * 109.46764 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47475 * 240.00203 * 2 1 3 34 34 H 1.09000 * 109.47390 * 119.99638 * 2 1 3 35 35 H 1.08995 * 109.58781 * 113.79397 * 6 5 3 36 36 H 1.08999 * 109.70240 * 353.44149 * 6 5 3 37 37 H 1.09000 * 109.49639 * 185.41111 * 7 6 5 38 38 H 1.09001 * 109.49721 * 65.31813 * 7 6 5 39 39 H 1.09003 * 109.45998 * 301.34758 * 8 7 6 40 40 H 1.08994 * 109.45250 * 181.37899 * 8 7 6 41 41 H 1.08998 * 109.49816 * 178.68123 * 9 8 7 42 42 H 1.09000 * 109.52203 * 58.60598 * 9 8 7 43 43 H 1.09007 * 109.46492 * 275.19925 * 15 14 12 44 44 H 1.08993 * 109.47599 * 35.19749 * 15 14 12 45 45 H 1.09000 * 109.47454 * 155.20085 * 15 14 12 46 46 H 1.09004 * 109.46715 * 330.00345 * 16 14 12 47 47 H 1.09001 * 109.47406 * 210.00182 * 16 14 12 48 48 H 0.96705 * 113.99549 * 300.00503 * 19 17 16 49 49 H 1.09000 * 109.47242 * 65.00229 * 20 17 16 50 50 H 1.08996 * 109.46941 * 305.00380 * 20 17 16 51 51 H 0.96999 * 120.00084 * 0.02562 * 21 20 17 52 52 H 0.96993 * 119.99992 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3574 1.6672 0.0005 6 6 4.3238 0.5642 0.0899 7 6 5.2811 0.8405 1.2536 8 6 5.9172 2.2201 1.0691 9 6 4.8253 3.2924 1.0768 10 6 3.8629 3.0439 -0.0889 11 1 4.3895 3.1814 -1.0332 12 6 2.7104 4.0116 -0.0076 13 8 2.0780 4.1163 1.0220 14 7 2.3826 4.7605 -1.0790 15 6 3.2078 4.7098 -2.2884 16 6 1.2009 5.6254 -1.0343 17 6 1.5995 7.0068 -0.5113 18 1 2.3456 7.4450 -1.1743 19 8 2.1464 6.8792 0.8028 20 6 0.3653 7.9099 -0.4640 21 7 0.7662 9.2649 -0.0777 22 6 -0.1757 10.2530 0.0307 23 1 -1.2141 10.0333 -0.1691 24 6 0.2042 11.5371 0.3962 25 7 1.4700 11.8051 0.6382 26 14 -1.0808 12.8847 0.5447 27 1 -2.4198 12.3296 0.2220 28 1 -1.0850 13.4139 1.9321 29 1 -0.7590 13.9821 -0.4027 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 4.8886 0.4970 -0.8398 36 1 3.7962 -0.3733 0.2655 37 1 6.0613 0.0796 1.2714 38 1 4.7282 0.8174 2.1928 39 1 6.4492 2.2505 0.1181 40 1 6.6172 2.4089 1.8829 41 1 5.2811 4.2766 0.9688 42 1 4.2767 3.2469 2.0176 43 1 4.0436 5.4022 -2.1872 44 1 3.5888 3.6980 -2.4262 45 1 2.6050 4.9917 -3.1517 46 1 0.4549 5.1872 -0.3712 47 1 0.7838 5.7228 -2.0366 48 1 1.5361 6.4952 1.4472 49 1 -0.3434 7.5187 0.2659 50 1 -0.1035 7.9362 -1.4476 51 1 1.6990 9.4625 0.1006 52 1 1.7354 12.7023 0.8939 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284415777.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:54 Heat of formation + Delta-G solvation = -125.797529 kcal Electronic energy + Delta-G solvation = -32036.159866 eV Core-core repulsion = 27842.316706 eV Total energy + Delta-G solvation = -4193.843160 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.04833 -40.10304 -38.66902 -38.19307 -36.30257 -35.85680 -34.25655 -33.47465 -33.23693 -32.33716 -30.80235 -28.01370 -27.46034 -26.56546 -25.11505 -24.99960 -23.82883 -22.64369 -21.73270 -20.74317 -19.56194 -19.27015 -18.52641 -17.84200 -17.64867 -17.03638 -16.74447 -16.56144 -16.51455 -16.34066 -15.91560 -15.36205 -15.16792 -15.12734 -14.92216 -14.74059 -14.47499 -14.32399 -14.16914 -13.90615 -13.86294 -13.72677 -13.41882 -13.24504 -13.03150 -12.98697 -12.82178 -12.65028 -12.59016 -12.38537 -12.16454 -12.09296 -12.03271 -11.97309 -11.85314 -11.73702 -11.60422 -11.13822 -11.01451 -10.56867 -10.41790 -9.65957 -9.40804 -9.05883 -7.97824 -5.28576 1.43627 1.46178 1.56310 1.56838 1.64889 2.07408 2.36549 2.53183 3.32206 3.37932 3.49886 3.72731 3.77214 3.80766 3.86600 3.98697 4.04562 4.09131 4.16419 4.19922 4.22407 4.23607 4.29452 4.43549 4.48725 4.49400 4.63790 4.64815 4.71779 4.75522 4.82193 4.85663 4.86136 4.87275 4.94013 5.02402 5.06037 5.13218 5.19063 5.21819 5.31676 5.42663 5.43212 5.50064 5.61060 6.22733 6.37907 6.55542 6.74421 7.18613 7.28722 7.54094 8.03232 8.28269 9.25928 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018660 B = 0.002520 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.162583 B =11109.287733 C =11871.152299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.486 3.514 4 O -0.551 6.551 5 N -0.604 5.604 6 C 0.103 3.897 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.120 4.120 10 C 0.126 3.874 11 H 0.116 0.884 12 C 0.535 3.465 13 O -0.565 6.565 14 N -0.615 5.615 15 C 0.071 3.929 16 C 0.110 3.890 17 C 0.099 3.901 18 H 0.091 0.909 19 O -0.563 6.563 20 C 0.126 3.874 21 N -0.740 5.740 22 C -0.250 4.250 23 H 0.076 0.924 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.980 3.020 27 H -0.265 1.265 28 H -0.293 1.293 29 H -0.288 1.288 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.050 0.950 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.104 0.896 48 H 0.373 0.627 49 H 0.015 0.985 50 H 0.040 0.960 51 H 0.374 0.626 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.019 -34.262 -7.325 36.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.276 3.724 4 O -0.429 6.429 5 N -0.340 5.340 6 C -0.017 4.017 7 C -0.173 4.173 8 C -0.150 4.150 9 C -0.159 4.159 10 C 0.019 3.981 11 H 0.133 0.867 12 C 0.325 3.675 13 O -0.442 6.442 14 N -0.348 5.348 15 C -0.071 4.071 16 C -0.015 4.015 17 C 0.039 3.961 18 H 0.109 0.891 19 O -0.369 6.369 20 C -0.002 4.002 21 N -0.383 5.383 22 C -0.381 4.381 23 H 0.094 0.906 24 C -0.271 4.271 25 N -0.620 5.620 26 Si 0.809 3.191 27 H -0.190 1.190 28 H -0.220 1.220 29 H -0.215 1.215 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.131 0.869 37 H 0.127 0.873 38 H 0.069 0.931 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.080 0.920 47 H 0.122 0.878 48 H 0.220 0.780 49 H 0.033 0.967 50 H 0.057 0.943 51 H 0.206 0.794 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.601 -33.438 -7.103 35.790 hybrid contribution -0.969 1.386 0.784 1.864 sum 9.632 -32.052 -6.319 34.059 Atomic orbital electron populations 1.21517 0.94133 1.02445 1.01263 1.21683 0.97519 0.91137 1.06451 1.21811 0.81891 0.93479 0.75225 1.90810 1.55511 1.46591 1.50001 1.48263 1.06067 1.06040 1.73653 1.22163 0.90667 0.88687 1.00222 1.21962 0.99477 0.97783 0.98086 1.21523 0.96210 0.93432 1.03832 1.21782 0.96721 1.00787 0.96582 1.21331 0.92912 0.82119 1.01743 0.86684 1.20268 0.84170 0.80146 0.82963 1.90587 1.53447 1.68376 1.31830 1.47599 1.28172 1.43742 1.15315 1.22062 0.95654 1.03009 0.86390 1.21818 0.87932 0.88979 1.02736 1.22401 0.95003 0.94068 0.84652 0.89126 1.86472 1.44477 1.85892 1.20033 1.21406 0.95655 0.85413 0.97710 1.42463 1.07426 1.05377 1.82993 1.19707 0.90545 0.89875 1.38003 0.90623 1.25685 0.98400 1.00111 1.02856 1.69868 1.16601 1.20613 1.54967 0.84978 0.78481 0.78831 0.76859 1.18954 1.21998 1.21483 0.94798 0.93792 0.89335 0.85647 0.86867 0.88374 0.86923 0.87322 0.93075 0.89421 0.90748 0.91356 0.93739 0.92062 0.89542 0.89411 0.92043 0.87835 0.77981 0.96747 0.94264 0.79405 0.93921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.20 71.98 0.66 -1.52 16 2 C -0.13 -1.55 4.80 29.85 0.14 -1.40 16 3 C 0.49 10.73 7.57 87.66 0.66 11.40 16 4 O -0.55 -18.41 11.58 20.56 0.24 -18.18 16 5 N -0.60 -10.26 2.97 -799.18 -2.38 -12.63 16 6 C 0.10 0.67 6.33 86.36 0.55 1.21 16 7 C -0.14 -1.01 6.08 30.67 0.19 -0.82 16 8 C -0.11 -1.23 5.88 30.62 0.18 -1.05 16 9 C -0.12 -2.47 5.28 30.67 0.16 -2.30 16 10 C 0.13 2.65 2.91 44.23 0.13 2.78 16 11 H 0.12 1.76 5.55 -2.39 -0.01 1.75 16 12 C 0.53 16.80 3.74 87.66 0.33 17.13 16 13 O -0.56 -23.14 12.70 25.43 0.32 -22.81 16 14 N -0.61 -17.48 2.83 -846.76 -2.39 -19.88 16 15 C 0.07 1.29 9.99 127.77 1.28 2.57 16 16 C 0.11 3.53 5.18 86.38 0.45 3.98 16 17 C 0.10 3.83 3.27 30.59 0.10 3.93 16 18 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 19 O -0.56 -24.78 11.99 -136.11 -1.63 -26.42 16 20 C 0.13 5.63 5.90 86.38 0.51 6.14 16 21 N -0.74 -41.68 5.55 -343.46 -1.91 -43.59 16 22 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 23 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 24 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 25 N -0.97 -63.16 13.06 21.65 0.28 -62.88 16 26 Si 0.98 48.59 29.55 68.60 2.03 50.62 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 29 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 30 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 31 H 0.04 0.85 8.10 -2.39 -0.02 0.83 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.13 0.66 8.08 -2.39 -0.02 0.64 16 34 H 0.11 0.87 7.52 -2.39 -0.02 0.85 16 35 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.11 0.21 5.97 -2.39 -0.01 0.19 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.19 16 38 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.04 1.22 7.84 -2.39 -0.02 1.21 16 43 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.09 1.14 6.17 -2.39 -0.01 1.13 16 45 H 0.09 1.35 7.83 -2.39 -0.02 1.33 16 46 H 0.06 2.32 7.49 -2.39 -0.02 2.30 16 47 H 0.10 2.75 7.86 -2.39 -0.02 2.73 16 48 H 0.37 16.41 8.32 -74.05 -0.62 15.80 16 49 H 0.01 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.37 22.79 7.67 -92.71 -0.71 22.08 16 52 H 0.25 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -89.43 405.38 0.80 -88.63 By element: Atomic # 1 Polarization: 44.02 SS G_CDS: -0.41 Total: 43.61 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: 6.64 Total: 23.52 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -6.39 Total: -138.97 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -1.07 Total: -67.40 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -89.43 0.80 -88.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415777.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.171 kcal (2) G-P(sol) polarization free energy of solvation -89.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds