Wall clock time and date at job start Wed Apr 1 2020 00:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47202 * 2 1 4 4 O 1.21274 * 119.99777 * 359.97438 * 3 2 1 5 5 N 1.34778 * 119.99708 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63302 * 354.23117 * 5 3 2 7 7 C 1.53189 * 108.77269 * 126.41349 * 6 5 3 8 8 C 1.53045 * 109.31227 * 54.63599 * 7 6 5 9 9 C 1.53071 * 109.66040 * 298.69696 * 8 7 6 10 10 C 1.46929 * 120.62475 * 174.25471 * 5 3 2 11 11 H 1.09000 * 109.58449 * 113.65563 * 10 5 3 12 12 C 1.50690 * 109.59114 * 353.37280 * 10 5 3 13 13 O 1.21288 * 120.00173 * 299.44726 * 12 10 5 14 14 N 1.34775 * 120.00360 * 119.44104 * 12 10 5 15 15 C 1.46503 * 119.99911 * 5.19582 * 14 12 10 16 16 C 1.46495 * 120.00273 * 185.19450 * 14 12 10 17 17 C 1.52995 * 109.47334 * 269.99807 * 16 14 12 18 18 H 1.09011 * 109.46952 * 60.00390 * 17 16 14 19 19 O 1.42896 * 109.47604 * 300.00180 * 17 16 14 20 20 C 1.53004 * 109.47338 * 180.02562 * 17 16 14 21 21 N 1.46495 * 109.47092 * 185.00699 * 20 17 16 22 22 C 1.36943 * 120.00142 * 180.02562 * 21 20 17 23 23 H 1.07996 * 119.99327 * 359.97438 * 22 21 20 24 24 C 1.38807 * 120.00052 * 179.97438 * 22 21 20 25 25 N 1.31622 * 119.99923 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00098 * 359.72463 * 24 22 21 27 27 H 1.48494 * 109.47355 * 270.27327 * 26 24 22 28 28 H 1.48496 * 109.47243 * 30.27682 * 26 24 22 29 29 H 1.48501 * 109.47089 * 150.27305 * 26 24 22 30 30 H 1.08998 * 109.47189 * 300.00019 * 1 2 3 31 31 H 1.08997 * 109.47082 * 59.99863 * 1 2 3 32 32 H 1.08998 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46780 * 239.99964 * 2 1 3 34 34 H 1.08997 * 109.47082 * 120.00137 * 2 1 3 35 35 H 1.08994 * 109.58291 * 246.20100 * 6 5 3 36 36 H 1.08995 * 109.58580 * 6.48604 * 6 5 3 37 37 H 1.09001 * 109.49429 * 174.58163 * 7 6 5 38 38 H 1.09001 * 109.50181 * 294.68399 * 7 6 5 39 39 H 1.09004 * 109.46060 * 58.65662 * 8 7 6 40 40 H 1.09004 * 109.46059 * 178.62186 * 8 7 6 41 41 H 1.09002 * 109.38749 * 301.27872 * 9 8 7 42 42 H 1.08994 * 109.62273 * 181.17425 * 9 8 7 43 43 H 1.09000 * 109.47156 * 266.86380 * 15 14 12 44 44 H 1.09001 * 109.46773 * 26.85646 * 15 14 12 45 45 H 1.08999 * 109.47111 * 146.85897 * 15 14 12 46 46 H 1.09005 * 109.47045 * 149.99747 * 16 14 12 47 47 H 1.09003 * 109.47608 * 30.00235 * 16 14 12 48 48 H 0.96701 * 113.99974 * 299.99968 * 19 17 16 49 49 H 1.08998 * 109.46865 * 65.00117 * 20 17 16 50 50 H 1.09001 * 109.47148 * 305.00414 * 20 17 16 51 51 H 0.97002 * 120.00421 * 359.97438 * 21 20 17 52 52 H 0.97002 * 120.00271 * 179.72671 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3234 0.5671 0.1260 7 6 5.3170 0.6473 -1.0372 8 6 5.9507 2.0401 -1.0664 9 6 4.8642 3.0958 -1.2857 10 6 3.8635 3.0406 -0.1271 11 1 4.3593 3.3340 0.7982 12 6 2.7168 3.9779 -0.4049 13 8 2.0420 3.8318 -1.4021 14 7 2.4409 4.9787 0.4546 15 6 3.3227 5.2261 1.5981 16 6 1.2593 5.8190 0.2456 17 6 1.6337 7.0171 -0.6291 18 1 2.0026 6.6629 -1.5918 19 8 2.6525 7.7807 0.0197 20 6 0.3998 7.8951 -0.8469 21 7 0.7278 8.9756 -1.7802 22 6 -0.2270 9.8935 -2.1279 23 1 -1.2220 9.8206 -1.7144 24 6 0.0840 10.9176 -3.0119 25 7 -0.8340 11.7995 -3.3465 26 14 1.8071 11.0481 -3.7211 27 1 2.6465 11.8894 -2.8307 28 1 2.4029 9.6921 -3.8269 29 1 1.7419 11.6667 -5.0695 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.8588 0.6580 1.0710 36 1 3.7970 -0.3868 0.0945 37 1 6.0954 -0.1038 -0.9031 38 1 4.7936 0.4660 -1.9760 39 1 6.4530 2.2305 -0.1179 40 1 6.6762 2.0920 -1.8782 41 1 4.3467 2.8929 -2.2234 42 1 5.3186 4.0856 -1.3272 43 1 2.9495 4.6860 2.4683 44 1 4.3296 4.8822 1.3614 45 1 3.3450 6.2940 1.8153 46 1 0.8904 6.1731 1.2083 47 1 0.4821 5.2366 -0.2493 48 1 2.3932 8.1284 0.8840 49 1 0.0842 8.3209 0.1056 50 1 -0.4078 7.2908 -1.2601 51 1 1.6216 9.0413 -2.1513 52 1 -0.6156 12.5175 -3.9611 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284415778.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:59 Heat of formation + Delta-G solvation = -93.794115 kcal Electronic energy + Delta-G solvation = -31992.362274 eV Core-core repulsion = 27799.906887 eV Total energy + Delta-G solvation = -4192.455388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.24759 -39.11713 -37.79511 -37.25782 -35.05108 -34.07861 -33.55411 -32.86862 -31.80363 -31.33770 -29.70237 -26.82273 -26.72238 -25.41780 -24.54557 -23.67813 -22.19688 -21.19984 -21.11537 -19.93015 -18.79451 -17.68030 -17.61752 -16.94687 -16.54724 -16.04103 -15.90534 -15.72208 -15.15899 -14.82543 -14.68897 -14.61448 -14.34851 -14.05436 -13.97254 -13.66930 -13.52692 -13.25807 -13.12275 -13.02769 -12.63358 -12.45275 -12.43485 -12.31561 -12.12074 -11.97077 -11.81190 -11.58294 -11.44361 -11.35164 -11.28582 -11.15039 -11.09683 -10.78795 -10.71733 -10.14241 -9.86262 -9.71682 -9.53134 -9.42113 -8.95759 -8.83582 -8.31315 -7.14925 -5.69598 -3.04272 2.29317 2.44892 3.01389 3.17207 3.46992 3.52762 3.53408 4.09950 4.26112 4.40654 4.42581 4.57463 4.60646 4.68066 4.70618 4.71192 4.74934 4.78808 4.93235 5.00824 5.05805 5.06811 5.20733 5.25520 5.29169 5.38786 5.40234 5.43411 5.52499 5.59288 5.60768 5.61007 5.65680 5.67593 5.68065 5.92788 5.93741 5.98452 6.01889 6.03339 6.13171 6.58045 6.59467 6.76556 7.04023 7.49755 7.94720 7.96650 8.08072 8.45086 8.49684 9.29754 10.02359 10.23243 11.48811 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015686 B = 0.002762 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.585447 B =10136.727675 C =10810.821069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.504 3.496 4 O -0.497 6.497 5 N -0.609 5.609 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.124 3.876 11 H 0.090 0.910 12 C 0.536 3.464 13 O -0.519 6.519 14 N -0.606 5.606 15 C 0.081 3.919 16 C 0.098 3.902 17 C 0.082 3.918 18 H 0.100 0.900 19 O -0.556 6.556 20 C 0.131 3.869 21 N -0.750 5.750 22 C -0.243 4.243 23 H 0.089 0.911 24 C 0.003 3.997 25 N -0.936 5.936 26 Si 0.887 3.113 27 H -0.284 1.284 28 H -0.277 1.277 29 H -0.292 1.292 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.095 0.905 48 H 0.367 0.633 49 H 0.028 0.972 50 H 0.035 0.965 51 H 0.365 0.635 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.636 -29.854 13.587 36.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.292 3.708 4 O -0.370 6.370 5 N -0.346 5.346 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.155 4.155 9 C -0.164 4.164 10 C 0.018 3.982 11 H 0.108 0.892 12 C 0.324 3.676 13 O -0.394 6.394 14 N -0.340 5.340 15 C -0.062 4.062 16 C -0.026 4.026 17 C 0.022 3.978 18 H 0.118 0.882 19 O -0.360 6.360 20 C 0.003 3.997 21 N -0.395 5.395 22 C -0.373 4.373 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.584 5.584 26 Si 0.717 3.283 27 H -0.211 1.211 28 H -0.203 1.203 29 H -0.218 1.218 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.113 0.887 48 H 0.213 0.787 49 H 0.046 0.954 50 H 0.053 0.947 51 H 0.198 0.802 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.909 -29.473 12.494 35.313 hybrid contribution 1.011 0.313 0.007 1.059 sum 15.920 -29.160 12.501 35.497 Atomic orbital electron populations 1.21540 0.92795 1.01501 1.03687 1.21618 0.98793 0.93516 1.03792 1.20902 0.81518 0.92270 0.76071 1.90795 1.54136 1.44980 1.47095 1.48038 1.05803 1.06142 1.74615 1.21768 0.90929 0.89719 0.98787 1.21952 0.98700 0.97827 0.99154 1.21507 0.97431 0.94020 1.02505 1.21857 0.95901 1.00298 0.98328 1.21302 0.94229 0.82432 1.00267 0.89224 1.19675 0.84202 0.80364 0.83410 1.90704 1.49270 1.71651 1.27781 1.47436 1.26990 1.32457 1.27086 1.21809 0.93565 1.02612 0.88257 1.22039 0.87871 0.92234 1.00409 1.22633 0.89390 0.89612 0.96194 0.88226 1.86579 1.41118 1.71812 1.36535 1.21201 0.94552 0.89955 0.93996 1.42595 1.11964 1.31286 1.53705 1.19070 0.93335 1.03220 1.21644 0.89302 1.24657 0.97337 0.97546 0.99675 1.69712 1.32683 1.17228 1.38788 0.86492 0.85618 0.77590 0.78561 1.21063 1.20289 1.21824 0.92004 0.91676 0.92140 0.89056 0.89233 0.91107 0.89302 0.90394 0.91123 0.91565 0.90993 0.90177 0.90192 0.93381 0.91481 0.90336 0.90567 0.88679 0.78667 0.95394 0.94690 0.80169 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.20 37.16 0.34 -0.85 16 2 C -0.14 -1.03 4.78 -27.88 -0.13 -1.16 16 3 C 0.50 5.84 7.39 -10.98 -0.08 5.76 16 4 O -0.50 -8.03 11.69 -19.22 -0.22 -8.25 16 5 N -0.61 -5.68 2.97 -166.54 -0.50 -6.18 16 6 C 0.11 0.56 6.35 -3.71 -0.02 0.54 16 7 C -0.14 -0.67 6.08 -26.61 -0.16 -0.83 16 8 C -0.12 -0.69 5.88 -26.67 -0.16 -0.85 16 9 C -0.13 -1.18 5.33 -26.59 -0.14 -1.32 16 10 C 0.12 1.31 2.90 -68.75 -0.20 1.11 16 11 H 0.09 0.75 5.48 -51.93 -0.28 0.47 16 12 C 0.54 8.04 4.25 -10.99 -0.05 7.99 16 13 O -0.52 -10.10 14.17 -19.23 -0.27 -10.38 16 14 N -0.61 -8.21 2.80 -181.58 -0.51 -8.72 16 15 C 0.08 0.76 9.78 59.85 0.59 1.34 16 16 C 0.10 1.46 5.08 -4.05 -0.02 1.44 16 17 C 0.08 1.44 3.27 -26.73 -0.09 1.35 16 18 H 0.10 2.04 8.14 -51.92 -0.42 1.61 16 19 O -0.56 -9.04 11.95 -35.23 -0.42 -9.46 16 20 C 0.13 2.73 5.90 -4.04 -0.02 2.71 16 21 N -0.75 -19.39 5.35 -59.91 -0.32 -19.71 16 22 C -0.24 -7.31 10.47 -15.06 -0.16 -7.46 16 23 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 24 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 25 N -0.94 -30.63 13.97 55.49 0.78 -29.86 16 26 Si 0.89 23.69 27.73 -169.99 -4.71 18.97 16 27 H -0.28 -7.48 7.11 56.52 0.40 -7.08 16 28 H -0.28 -7.17 6.52 56.52 0.37 -6.80 16 29 H -0.29 -7.79 7.11 56.52 0.40 -7.38 16 30 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 31 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.09 0.43 7.71 -51.93 -0.40 0.03 16 35 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.09 0.29 5.93 -51.93 -0.31 -0.02 16 37 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.95 7.95 -51.93 -0.41 0.54 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.51 5.99 -51.93 -0.31 0.20 16 45 H 0.08 0.69 6.83 -51.93 -0.35 0.33 16 46 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 47 H 0.09 1.66 7.50 -51.93 -0.39 1.27 16 48 H 0.37 4.65 8.80 45.56 0.40 5.05 16 49 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 50 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.37 9.50 5.53 -40.82 -0.23 9.28 16 52 H 0.26 8.04 8.31 -40.82 -0.34 7.70 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -40.07 403.37 -8.70 -48.77 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -8.20 Total: 8.96 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -0.40 Total: 9.77 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: -0.55 Total: -64.47 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.92 Total: -28.09 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.71 Total: 18.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -40.07 -8.70 -48.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415778.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.019 kcal (2) G-P(sol) polarization free energy of solvation -40.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds