Wall clock time and date at job start Wed Apr 1 2020 00:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47117 * 2 1 4 4 O 1.21278 * 120.00371 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63116 * 356.29447 * 5 3 2 7 7 C 1.53191 * 108.77347 * 233.58614 * 6 5 3 8 8 C 1.53042 * 109.31235 * 305.36003 * 7 6 5 9 9 C 1.53037 * 109.53449 * 61.36641 * 8 7 6 10 10 C 1.46922 * 120.63315 * 176.26624 * 5 3 2 11 11 H 1.09002 * 109.70551 * 246.27645 * 10 5 3 12 12 C 1.50707 * 109.58585 * 6.62742 * 10 5 3 13 13 O 1.21280 * 119.99668 * 65.00145 * 12 10 5 14 14 N 1.34778 * 120.00013 * 244.72781 * 12 10 5 15 15 C 1.46495 * 119.99732 * 354.53740 * 14 12 10 16 16 C 1.46496 * 119.99844 * 174.53976 * 14 12 10 17 17 C 1.52997 * 109.47222 * 89.99587 * 16 14 12 18 18 H 1.08993 * 109.47597 * 305.00050 * 17 16 14 19 19 O 1.42904 * 109.47049 * 65.00278 * 17 16 14 20 20 C 1.53005 * 109.47277 * 184.99687 * 17 16 14 21 21 N 1.46494 * 109.47568 * 180.02562 * 20 17 16 22 22 C 1.36932 * 120.00406 * 180.02562 * 21 20 17 23 23 H 1.08000 * 119.99866 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00271 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99599 * 359.97438 * 24 22 21 26 26 Si 1.86790 * 120.00245 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47197 * 89.99620 * 26 24 22 28 28 H 1.48496 * 109.47424 * 209.99785 * 26 24 22 29 29 H 1.48505 * 109.47361 * 329.99900 * 26 24 22 30 30 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46541 * 299.99643 * 1 2 3 32 32 H 1.08997 * 109.47374 * 59.99583 * 1 2 3 33 33 H 1.09005 * 109.46877 * 239.99947 * 2 1 3 34 34 H 1.09005 * 109.47599 * 120.00623 * 2 1 3 35 35 H 1.08998 * 109.59308 * 113.79643 * 6 5 3 36 36 H 1.09007 * 109.70374 * 353.43656 * 6 5 3 37 37 H 1.09003 * 109.49832 * 185.41201 * 7 6 5 38 38 H 1.09006 * 109.49883 * 65.31473 * 7 6 5 39 39 H 1.08994 * 109.45666 * 301.34458 * 8 7 6 40 40 H 1.09003 * 109.44895 * 181.37946 * 8 7 6 41 41 H 1.09007 * 109.49479 * 178.68081 * 9 8 7 42 42 H 1.09004 * 109.52711 * 58.60252 * 9 8 7 43 43 H 1.08998 * 109.47669 * 94.29482 * 15 14 12 44 44 H 1.09003 * 109.46964 * 214.29340 * 15 14 12 45 45 H 1.08999 * 109.47354 * 334.29007 * 15 14 12 46 46 H 1.08999 * 109.47150 * 209.99984 * 16 14 12 47 47 H 1.09008 * 109.47345 * 329.99468 * 16 14 12 48 48 H 0.96696 * 114.00407 * 59.99309 * 19 17 16 49 49 H 1.09006 * 109.47080 * 300.00383 * 20 17 16 50 50 H 1.09002 * 109.46898 * 59.99842 * 20 17 16 51 51 H 0.97010 * 119.99488 * 0.02562 * 21 20 17 52 52 H 0.97002 * 119.99521 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3240 0.5634 0.0806 7 6 5.2834 0.8329 1.2441 8 6 5.9193 2.2135 1.0664 9 6 4.8275 3.2857 1.0824 10 6 3.8629 3.0441 -0.0829 11 1 4.3878 3.1871 -1.0274 12 6 2.7107 4.0114 0.0062 13 8 2.0565 4.0831 1.0249 14 7 2.4106 4.8006 -1.0443 15 6 3.2748 4.8054 -2.2272 16 6 1.2203 5.6536 -1.0032 17 6 1.5892 7.0158 -0.4122 18 1 2.0565 6.8746 0.5623 19 8 2.5022 7.6827 -1.2862 20 6 0.3246 7.8623 -0.2536 21 7 0.6778 9.1668 0.3117 22 6 -0.2978 10.0989 0.5450 23 1 -1.3278 9.8724 0.3119 24 6 0.0370 11.3352 1.0802 25 7 1.2922 11.6113 1.3638 26 14 -1.2938 12.6068 1.3978 27 1 -1.8261 12.4334 2.7732 28 1 -0.7204 13.9693 1.2571 29 1 -2.3933 12.4287 0.4155 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.8872 0.5016 -0.8506 36 1 3.7967 -0.3751 0.2518 37 1 6.0636 0.0718 1.2560 38 1 4.7323 0.8044 2.1842 39 1 6.4495 2.2493 0.1147 40 1 6.6209 2.3974 1.8801 41 1 5.2832 4.2706 0.9793 42 1 4.2806 3.2348 2.0239 43 1 2.8868 4.1018 -2.9636 44 1 3.2962 5.8067 -2.6575 45 1 4.2846 4.5116 -1.9407 46 1 0.8348 5.7883 -2.0138 47 1 0.4573 5.1831 -0.3830 48 1 2.1523 7.8419 -2.1735 49 1 -0.1427 8.0036 -1.2282 50 1 -0.3719 7.3536 0.4130 51 1 1.6030 9.3704 0.5207 52 1 1.5261 12.4751 1.7381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284415779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:03 Heat of formation + Delta-G solvation = -95.833063 kcal Electronic energy + Delta-G solvation = -31891.161653 eV Core-core repulsion = 27698.617850 eV Total energy + Delta-G solvation = -4192.543803 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.19043 -39.02447 -37.73326 -37.10799 -34.94773 -33.88828 -33.52034 -32.82977 -31.73119 -31.13823 -29.35789 -26.66474 -26.59106 -25.28139 -24.50448 -23.67313 -22.43832 -21.09291 -21.05693 -19.86663 -18.73610 -17.60839 -17.06074 -16.83705 -16.49209 -15.98019 -15.89610 -15.66160 -15.01864 -14.77856 -14.63560 -14.47511 -14.34548 -13.97968 -13.89993 -13.64268 -13.37478 -13.19416 -13.09632 -12.80395 -12.56190 -12.43676 -12.41423 -12.24923 -11.98340 -11.95383 -11.71936 -11.53231 -11.40964 -11.23578 -11.21196 -11.03306 -10.84838 -10.74997 -10.51921 -10.09730 -9.78152 -9.64568 -9.60219 -9.31219 -8.90948 -8.80121 -8.20661 -6.81409 -5.65762 -2.94415 2.34927 2.45107 3.10521 3.27472 3.50141 3.54466 3.56519 4.14585 4.30845 4.45760 4.48041 4.62620 4.65844 4.66780 4.73632 4.79078 4.79525 4.89492 4.98275 5.04892 5.14777 5.21942 5.23644 5.32540 5.39478 5.45762 5.47759 5.49073 5.54266 5.65301 5.66625 5.68823 5.70712 5.72966 5.85105 6.00113 6.01353 6.08304 6.15758 6.19178 6.37338 6.68968 6.70599 6.91925 7.07606 7.58975 7.77684 7.98435 8.15912 8.52784 8.55722 9.63867 10.23273 10.59609 11.56886 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002528 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.384345 B =11074.446553 C =11709.037476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.501 3.499 4 O -0.495 6.495 5 N -0.607 5.607 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.117 4.117 9 C -0.125 4.125 10 C 0.123 3.877 11 H 0.091 0.909 12 C 0.535 3.465 13 O -0.515 6.515 14 N -0.608 5.608 15 C 0.080 3.920 16 C 0.098 3.902 17 C 0.087 3.913 18 H 0.099 0.901 19 O -0.552 6.552 20 C 0.127 3.873 21 N -0.725 5.725 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.365 0.635 49 H 0.018 0.982 50 H 0.027 0.973 51 H 0.389 0.611 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -30.412 -8.110 33.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.289 3.711 4 O -0.368 6.368 5 N -0.344 5.344 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.155 4.155 9 C -0.164 4.164 10 C 0.017 3.983 11 H 0.109 0.891 12 C 0.322 3.678 13 O -0.389 6.389 14 N -0.342 5.342 15 C -0.063 4.063 16 C -0.025 4.025 17 C 0.027 3.973 18 H 0.117 0.883 19 O -0.356 6.356 20 C -0.002 4.002 21 N -0.370 5.370 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.580 5.580 26 Si 0.739 3.261 27 H -0.218 1.218 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.211 0.789 49 H 0.036 0.964 50 H 0.045 0.955 51 H 0.223 0.777 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.204 -29.818 -7.021 32.289 hybrid contribution -0.603 0.752 -0.294 1.008 sum 9.601 -29.066 -7.315 31.473 Atomic orbital electron populations 1.21540 0.92831 1.01471 1.03674 1.21627 0.98755 0.93584 1.03800 1.20949 0.81656 0.92272 0.76239 1.90848 1.54134 1.44699 1.47101 1.48047 1.05794 1.05683 1.74912 1.21762 0.91084 0.89371 0.99000 1.21955 0.98873 0.97873 0.98925 1.21504 0.97416 0.94008 1.02540 1.21852 0.96144 0.99765 0.98623 1.21361 0.94436 0.82044 1.00504 0.89138 1.19651 0.84126 0.80307 0.83691 1.90701 1.50226 1.67902 1.30083 1.47477 1.26922 1.43083 1.16699 1.21815 0.93858 1.02893 0.87770 1.22067 0.87512 0.91150 1.01786 1.22557 0.91457 0.89314 0.94000 0.88277 1.86600 1.42815 1.80419 1.25778 1.21218 0.94104 0.88212 0.96695 1.42248 1.08270 1.10789 1.75685 1.19240 0.89374 0.93660 1.34746 0.91311 1.24754 0.96244 0.97975 1.02139 1.69692 1.15638 1.22899 1.49744 0.86179 0.80803 0.81157 0.77994 1.21755 1.21799 1.20822 0.92156 0.91741 0.91976 0.89150 0.89145 0.91131 0.89369 0.90426 0.91152 0.91568 0.90994 0.90195 0.90074 0.93542 0.90223 0.91459 0.90831 0.88864 0.78902 0.96391 0.95536 0.77705 0.93597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.20 37.16 0.34 -0.84 16 2 C -0.14 -1.03 4.80 -27.89 -0.13 -1.16 16 3 C 0.50 5.88 7.56 -10.99 -0.08 5.80 16 4 O -0.49 -8.17 11.49 -19.32 -0.22 -8.39 16 5 N -0.61 -5.84 2.97 -166.54 -0.49 -6.33 16 6 C 0.11 0.59 6.33 -3.71 -0.02 0.57 16 7 C -0.14 -0.73 6.08 -26.61 -0.16 -0.89 16 8 C -0.12 -0.76 5.88 -26.69 -0.16 -0.91 16 9 C -0.13 -1.26 5.30 -26.62 -0.14 -1.41 16 10 C 0.12 1.36 2.95 -68.75 -0.20 1.15 16 11 H 0.09 0.80 5.39 -51.93 -0.28 0.52 16 12 C 0.54 8.36 4.24 -10.98 -0.05 8.32 16 13 O -0.51 -10.40 14.12 -19.33 -0.27 -10.67 16 14 N -0.61 -8.68 2.84 -181.57 -0.52 -9.20 16 15 C 0.08 0.81 9.94 59.84 0.59 1.40 16 16 C 0.10 1.55 5.04 -4.05 -0.02 1.53 16 17 C 0.09 1.63 3.30 -26.73 -0.09 1.54 16 18 H 0.10 2.17 8.14 -51.93 -0.42 1.75 16 19 O -0.55 -9.88 11.84 -35.23 -0.42 -10.29 16 20 C 0.13 2.79 5.92 -4.04 -0.02 2.76 16 21 N -0.73 -20.03 5.49 -59.91 -0.33 -20.36 16 22 C -0.24 -7.14 9.99 -15.06 -0.15 -7.29 16 23 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 24 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 25 N -0.93 -29.80 13.06 55.49 0.72 -29.07 16 26 Si 0.91 23.48 29.55 -169.99 -5.02 18.46 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.09 0.45 8.08 -51.93 -0.42 0.04 16 34 H 0.09 0.52 7.54 -51.93 -0.39 0.13 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.31 5.97 -51.92 -0.31 0.00 16 37 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 42 H 0.08 1.03 7.87 -51.93 -0.41 0.62 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.08 0.79 7.05 -51.93 -0.37 0.42 16 45 H 0.07 0.56 5.86 -51.93 -0.30 0.26 16 46 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 47 H 0.09 1.70 7.51 -51.92 -0.39 1.31 16 48 H 0.36 5.26 9.04 45.56 0.41 5.67 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.39 11.50 7.54 -40.82 -0.31 11.19 16 52 H 0.25 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 406.53 15.07 6.13 6.13 Total: -1.00 -39.48 406.53 -9.04 -48.51 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -8.22 Total: 11.21 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.39 Total: 10.02 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.61 Total: -64.96 kcal Atomic # 8 Polarization: -28.45 SS G_CDS: -0.91 Total: -29.36 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -39.48 -9.04 -48.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.319 kcal (2) G-P(sol) polarization free energy of solvation -39.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds