Wall clock time and date at job start Wed Apr 1 2020 00:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50692 * 109.47117 * 2 1 4 4 O 1.21278 * 120.00371 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99980 * 180.02562 * 3 2 1 6 6 C 1.46926 * 120.63116 * 356.29447 * 5 3 2 7 7 C 1.53191 * 108.77347 * 233.58614 * 6 5 3 8 8 C 1.53042 * 109.31235 * 305.36003 * 7 6 5 9 9 C 1.53037 * 109.53449 * 61.36641 * 8 7 6 10 10 C 1.46922 * 120.63315 * 176.26624 * 5 3 2 11 11 H 1.09002 * 109.70551 * 246.27645 * 10 5 3 12 12 C 1.50707 * 109.58585 * 6.62742 * 10 5 3 13 13 O 1.21280 * 119.99668 * 65.00145 * 12 10 5 14 14 N 1.34778 * 120.00013 * 244.72781 * 12 10 5 15 15 C 1.46495 * 119.99732 * 354.53740 * 14 12 10 16 16 C 1.46496 * 119.99844 * 174.53976 * 14 12 10 17 17 C 1.52997 * 109.47222 * 89.99587 * 16 14 12 18 18 H 1.08993 * 109.47597 * 305.00050 * 17 16 14 19 19 O 1.42904 * 109.47049 * 65.00278 * 17 16 14 20 20 C 1.53005 * 109.47277 * 184.99687 * 17 16 14 21 21 N 1.46494 * 109.47568 * 180.02562 * 20 17 16 22 22 C 1.36932 * 120.00406 * 180.02562 * 21 20 17 23 23 H 1.08000 * 119.99866 * 359.97438 * 22 21 20 24 24 C 1.38814 * 120.00271 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99599 * 359.97438 * 24 22 21 26 26 Si 1.86790 * 120.00245 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47197 * 89.99620 * 26 24 22 28 28 H 1.48496 * 109.47424 * 209.99785 * 26 24 22 29 29 H 1.48505 * 109.47361 * 329.99900 * 26 24 22 30 30 H 1.09000 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46541 * 299.99643 * 1 2 3 32 32 H 1.08997 * 109.47374 * 59.99583 * 1 2 3 33 33 H 1.09005 * 109.46877 * 239.99947 * 2 1 3 34 34 H 1.09005 * 109.47599 * 120.00623 * 2 1 3 35 35 H 1.08998 * 109.59308 * 113.79643 * 6 5 3 36 36 H 1.09007 * 109.70374 * 353.43656 * 6 5 3 37 37 H 1.09003 * 109.49832 * 185.41201 * 7 6 5 38 38 H 1.09006 * 109.49883 * 65.31473 * 7 6 5 39 39 H 1.08994 * 109.45666 * 301.34458 * 8 7 6 40 40 H 1.09003 * 109.44895 * 181.37946 * 8 7 6 41 41 H 1.09007 * 109.49479 * 178.68081 * 9 8 7 42 42 H 1.09004 * 109.52711 * 58.60252 * 9 8 7 43 43 H 1.08998 * 109.47669 * 94.29482 * 15 14 12 44 44 H 1.09003 * 109.46964 * 214.29340 * 15 14 12 45 45 H 1.08999 * 109.47354 * 334.29007 * 15 14 12 46 46 H 1.08999 * 109.47150 * 209.99984 * 16 14 12 47 47 H 1.09008 * 109.47345 * 329.99468 * 16 14 12 48 48 H 0.96696 * 114.00407 * 59.99309 * 19 17 16 49 49 H 1.09006 * 109.47080 * 300.00383 * 20 17 16 50 50 H 1.09002 * 109.46898 * 59.99842 * 20 17 16 51 51 H 0.97010 * 119.99488 * 0.02562 * 21 20 17 52 52 H 0.97002 * 119.99521 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 8 1.2443 2.3426 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3240 0.5634 0.0806 7 6 5.2834 0.8329 1.2441 8 6 5.9193 2.2135 1.0664 9 6 4.8275 3.2857 1.0824 10 6 3.8629 3.0441 -0.0829 11 1 4.3878 3.1871 -1.0274 12 6 2.7107 4.0114 0.0062 13 8 2.0565 4.0831 1.0249 14 7 2.4106 4.8006 -1.0443 15 6 3.2748 4.8054 -2.2272 16 6 1.2203 5.6536 -1.0032 17 6 1.5892 7.0158 -0.4122 18 1 2.0565 6.8746 0.5623 19 8 2.5022 7.6827 -1.2862 20 6 0.3246 7.8623 -0.2536 21 7 0.6778 9.1668 0.3117 22 6 -0.2978 10.0989 0.5450 23 1 -1.3278 9.8724 0.3119 24 6 0.0370 11.3352 1.0802 25 7 1.2922 11.6113 1.3638 26 14 -1.2938 12.6068 1.3978 27 1 -1.8261 12.4334 2.7732 28 1 -0.7204 13.9693 1.2571 29 1 -2.3933 12.4287 0.4155 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 4.8872 0.5016 -0.8506 36 1 3.7967 -0.3751 0.2518 37 1 6.0636 0.0718 1.2560 38 1 4.7323 0.8044 2.1842 39 1 6.4495 2.2493 0.1147 40 1 6.6209 2.3974 1.8801 41 1 5.2832 4.2706 0.9793 42 1 4.2806 3.2348 2.0239 43 1 2.8868 4.1018 -2.9636 44 1 3.2962 5.8067 -2.6575 45 1 4.2846 4.5116 -1.9407 46 1 0.8348 5.7883 -2.0138 47 1 0.4573 5.1831 -0.3830 48 1 2.1523 7.8419 -2.1735 49 1 -0.1427 8.0036 -1.2282 50 1 -0.3719 7.3536 0.4130 51 1 1.6030 9.3704 0.5207 52 1 1.5261 12.4751 1.7381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284415779.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:02 Heat of formation + Delta-G solvation = -126.075999 kcal Electronic energy + Delta-G solvation = -31892.473085 eV Core-core repulsion = 27698.617850 eV Total energy + Delta-G solvation = -4193.855235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.09304 -40.14818 -38.78558 -38.29674 -36.35550 -35.78832 -34.28113 -33.50424 -33.26702 -32.39085 -30.88002 -27.95576 -27.49220 -26.57616 -25.14798 -25.01506 -23.86035 -22.73876 -21.74731 -20.79316 -19.58772 -19.28498 -18.56755 -17.82641 -17.63057 -17.12975 -16.87937 -16.66900 -16.46965 -16.32550 -15.95044 -15.37233 -15.22333 -15.15064 -14.92522 -14.75759 -14.49825 -14.44080 -14.21296 -13.98134 -13.85089 -13.68445 -13.41134 -13.21261 -13.04984 -12.99397 -12.80456 -12.67202 -12.62204 -12.40445 -12.21572 -12.11064 -12.05259 -11.99975 -11.86550 -11.75545 -11.61744 -11.25408 -11.02801 -10.63817 -10.43398 -9.69570 -9.41067 -9.07084 -7.98158 -5.29252 1.43085 1.46922 1.50027 1.55268 1.63652 2.03184 2.30075 2.52740 3.31981 3.35291 3.43615 3.66646 3.75512 3.77183 3.85234 3.94005 3.99920 4.08689 4.13312 4.15144 4.19442 4.22343 4.33125 4.41251 4.46542 4.51034 4.63100 4.65674 4.70447 4.77718 4.79920 4.84468 4.85387 4.92715 4.94242 5.01234 5.04605 5.11512 5.16195 5.19445 5.30567 5.41798 5.41964 5.48923 5.58780 6.21997 6.36506 6.49569 6.84481 7.16692 7.28096 7.45489 8.02268 8.27729 9.25447 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002528 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.384345 B =11074.446553 C =11709.037476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.128 4.128 3 C 0.484 3.516 4 O -0.553 6.553 5 N -0.604 5.604 6 C 0.103 3.897 7 C -0.136 4.136 8 C -0.111 4.111 9 C -0.124 4.124 10 C 0.126 3.874 11 H 0.121 0.879 12 C 0.524 3.476 13 O -0.575 6.575 14 N -0.611 5.611 15 C 0.074 3.926 16 C 0.112 3.888 17 C 0.110 3.890 18 H 0.059 0.941 19 O -0.558 6.558 20 C 0.126 3.874 21 N -0.740 5.740 22 C -0.252 4.252 23 H 0.076 0.924 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.981 3.019 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.266 1.266 30 H 0.089 0.911 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.042 0.958 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.106 0.894 47 H 0.062 0.938 48 H 0.383 0.617 49 H 0.041 0.959 50 H 0.015 0.985 51 H 0.374 0.626 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.094 -32.936 -10.492 36.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.274 3.726 4 O -0.431 6.431 5 N -0.340 5.340 6 C -0.017 4.017 7 C -0.174 4.174 8 C -0.149 4.149 9 C -0.163 4.163 10 C 0.020 3.980 11 H 0.139 0.861 12 C 0.314 3.686 13 O -0.454 6.454 14 N -0.344 5.344 15 C -0.067 4.067 16 C -0.013 4.013 17 C 0.049 3.951 18 H 0.077 0.923 19 O -0.364 6.364 20 C -0.002 4.002 21 N -0.383 5.383 22 C -0.384 4.384 23 H 0.094 0.906 24 C -0.270 4.270 25 N -0.620 5.620 26 Si 0.809 3.191 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.191 1.191 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.145 0.855 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.232 0.768 49 H 0.058 0.942 50 H 0.033 0.967 51 H 0.206 0.794 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.533 -32.411 -9.467 35.681 hybrid contribution -0.976 1.493 0.438 1.836 sum 10.557 -30.918 -9.029 33.896 Atomic orbital electron populations 1.21521 0.94175 1.02475 1.01223 1.21682 0.97495 0.91067 1.06493 1.21838 0.81952 0.93510 0.75250 1.90829 1.55672 1.46639 1.49933 1.48253 1.06065 1.05973 1.73740 1.22174 0.90616 0.88620 1.00303 1.21973 0.99488 0.97881 0.98048 1.21518 0.96090 0.93258 1.04023 1.21843 0.96813 1.01154 0.96498 1.21363 0.92554 0.82075 1.02026 0.86125 1.20550 0.84615 0.80561 0.82889 1.90659 1.52613 1.69644 1.32483 1.47637 1.26776 1.42189 1.17837 1.22081 0.94224 1.03947 0.86487 1.21754 0.87875 0.89197 1.02456 1.22105 0.89486 0.90501 0.92976 0.92327 1.86563 1.42553 1.80422 1.26873 1.21385 0.95671 0.86353 0.96788 1.42440 1.07251 1.12372 1.76215 1.19677 0.90106 0.94314 1.34260 0.90600 1.25699 0.98685 1.00276 1.02357 1.69869 1.17879 1.23345 1.50950 0.85033 0.78158 0.77921 0.77975 1.21493 1.21682 1.19055 0.89225 0.94947 0.93764 0.85508 0.86877 0.88212 0.86945 0.87202 0.93198 0.89151 0.90641 0.90989 0.93945 0.91445 0.89745 0.89412 0.87595 0.91986 0.76777 0.94155 0.96711 0.79357 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 9.20 71.98 0.66 -1.64 16 2 C -0.13 -1.64 4.80 29.85 0.14 -1.49 16 3 C 0.48 11.22 7.56 87.65 0.66 11.88 16 4 O -0.55 -19.35 11.49 20.77 0.24 -19.11 16 5 N -0.60 -10.67 2.97 -799.18 -2.38 -13.04 16 6 C 0.10 0.70 6.33 86.36 0.55 1.24 16 7 C -0.14 -1.03 6.08 30.67 0.19 -0.84 16 8 C -0.11 -1.19 5.88 30.62 0.18 -1.01 16 9 C -0.12 -2.55 5.30 30.67 0.16 -2.39 16 10 C 0.13 2.71 2.95 44.23 0.13 2.84 16 11 H 0.12 1.80 5.39 -2.39 -0.01 1.79 16 12 C 0.52 17.16 4.24 87.66 0.37 17.53 16 13 O -0.58 -25.43 14.12 20.76 0.29 -25.14 16 14 N -0.61 -17.66 2.84 -846.77 -2.40 -20.07 16 15 C 0.07 1.34 9.94 127.77 1.27 2.61 16 16 C 0.11 3.64 5.04 86.38 0.44 4.08 16 17 C 0.11 4.31 3.30 30.59 0.10 4.41 16 18 H 0.06 2.78 8.14 -2.39 -0.02 2.77 16 19 O -0.56 -19.98 11.84 -148.98 -1.76 -21.75 16 20 C 0.13 5.71 5.92 86.38 0.51 6.22 16 21 N -0.74 -42.13 5.49 -343.45 -1.89 -44.02 16 22 C -0.25 -15.28 9.99 84.03 0.84 -14.44 16 23 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 24 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 25 N -0.97 -63.51 13.06 21.65 0.28 -63.22 16 26 Si 0.98 48.77 29.55 68.60 2.03 50.79 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 28 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 29 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.04 0.88 8.10 -2.39 -0.02 0.87 16 33 H 0.13 0.73 8.08 -2.38 -0.02 0.71 16 34 H 0.11 0.95 7.54 -2.38 -0.02 0.93 16 35 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.11 0.25 5.97 -2.38 -0.01 0.23 16 37 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 42 H 0.04 1.18 7.87 -2.39 -0.02 1.16 16 43 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.08 1.47 7.05 -2.39 -0.02 1.45 16 45 H 0.09 1.21 5.86 -2.39 -0.01 1.20 16 46 H 0.11 2.72 8.07 -2.39 -0.02 2.70 16 47 H 0.06 2.44 7.51 -2.38 -0.02 2.42 16 48 H 0.38 10.54 9.04 -74.06 -0.67 9.87 16 49 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 50 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.37 23.09 7.54 -92.70 -0.70 22.39 16 52 H 0.25 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -93.55 406.53 0.64 -92.91 By element: Atomic # 1 Polarization: 38.41 SS G_CDS: -0.45 Total: 37.97 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 6.67 Total: 24.68 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -6.38 Total: -140.35 kcal Atomic # 8 Polarization: -64.77 SS G_CDS: -1.23 Total: -66.00 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.79 kcal Total: -93.55 0.64 -92.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415779.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.166 kcal (2) G-P(sol) polarization free energy of solvation -93.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds