Wall clock time and date at job start Wed Apr 1 2020 00:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 O 1.21277 * 119.99814 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.46965 * 120.65377 * 354.47911 * 5 3 2 7 7 C 1.53192 * 108.88994 * 126.46371 * 6 5 3 8 8 C 1.53041 * 109.31568 * 54.55459 * 7 6 5 9 9 C 1.53042 * 109.53524 * 298.63599 * 8 7 6 10 10 C 1.46924 * 120.63078 * 174.28970 * 5 3 2 11 11 H 1.09004 * 109.58563 * 113.68390 * 10 5 3 12 12 C 1.50700 * 109.58814 * 353.40095 * 10 5 3 13 13 O 1.21280 * 119.99483 * 299.66929 * 12 10 5 14 14 N 1.34773 * 119.99965 * 119.67085 * 12 10 5 15 15 C 1.46495 * 120.00101 * 5.11574 * 14 12 10 16 16 C 1.46506 * 119.99899 * 185.12155 * 14 12 10 17 17 C 1.53000 * 109.47165 * 269.99981 * 16 14 12 18 18 H 1.09000 * 109.46620 * 305.00081 * 17 16 14 19 19 O 1.42898 * 109.47309 * 64.99472 * 17 16 14 20 20 C 1.52998 * 109.47271 * 185.00208 * 17 16 14 21 21 N 1.46500 * 109.46888 * 179.97438 * 20 17 16 22 22 C 1.36942 * 119.99535 * 179.97438 * 21 20 17 23 23 H 1.07995 * 119.99976 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99742 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00078 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47175 * 270.00341 * 26 24 22 28 28 H 1.48497 * 109.47165 * 30.00347 * 26 24 22 29 29 H 1.48500 * 109.47323 * 150.00177 * 26 24 22 30 30 H 1.09001 * 109.47506 * 59.99957 * 1 2 3 31 31 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47464 * 299.99952 * 1 2 3 33 33 H 1.09000 * 109.47464 * 240.00048 * 2 1 3 34 34 H 1.09001 * 109.47506 * 120.00043 * 2 1 3 35 35 H 1.08995 * 109.59526 * 6.59880 * 6 5 3 36 36 H 1.09004 * 109.58169 * 246.31508 * 6 5 3 37 37 H 1.09002 * 109.49477 * 294.60415 * 7 6 5 38 38 H 1.09001 * 109.49733 * 174.50684 * 7 6 5 39 39 H 1.09003 * 109.46192 * 178.61831 * 8 7 6 40 40 H 1.08992 * 109.44883 * 58.64754 * 8 7 6 41 41 H 1.09001 * 109.50241 * 301.41070 * 9 8 7 42 42 H 1.09005 * 109.49506 * 181.31450 * 9 8 7 43 43 H 1.08999 * 109.47401 * 266.74974 * 15 14 12 44 44 H 1.08993 * 109.47297 * 26.75814 * 15 14 12 45 45 H 1.09007 * 109.47024 * 146.75570 * 15 14 12 46 46 H 1.09000 * 109.47342 * 149.99561 * 16 14 12 47 47 H 1.09006 * 109.46872 * 29.99703 * 16 14 12 48 48 H 0.96704 * 113.99832 * 60.00091 * 19 17 16 49 49 H 1.08994 * 109.47286 * 59.99152 * 20 17 16 50 50 H 1.09001 * 109.46482 * 299.99738 * 20 17 16 51 51 H 0.96999 * 120.00535 * 359.97438 * 21 20 17 52 52 H 0.97006 * 120.00265 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.3239 0.5669 0.1227 7 6 5.3198 0.6503 -1.0383 8 6 5.9529 2.0434 -1.0630 9 6 4.8645 3.0964 -1.2836 10 6 3.8634 3.0407 -0.1253 11 1 4.3590 3.3337 0.8003 12 6 2.7167 3.9782 -0.4030 13 8 2.0398 3.8300 -1.3983 14 7 2.4436 4.9813 0.4547 15 6 3.3271 5.2299 1.5964 16 6 1.2629 5.8231 0.2452 17 6 1.6382 7.0186 -0.6328 18 1 2.4769 7.5503 -0.1834 19 8 2.0089 6.5568 -1.9333 20 6 0.4394 7.9622 -0.7491 21 7 0.7990 9.1072 -1.5893 22 6 -0.1215 10.0901 -1.8376 23 1 -1.1127 10.0210 -1.4143 24 6 0.2193 11.1753 -2.6332 25 7 1.4271 11.2592 -3.1495 26 14 -1.0366 12.5158 -2.9724 27 1 -1.8050 12.1758 -4.1969 28 1 -1.9661 12.6265 -1.8196 29 1 -0.3373 13.8107 -3.1705 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7983 -0.3873 0.0855 36 1 4.8579 0.6531 1.0691 37 1 4.7982 0.4711 -1.9785 38 1 6.0983 -0.1008 -0.9046 39 1 6.6800 2.0975 -1.8733 40 1 6.4531 2.2316 -0.1131 41 1 4.3472 2.8941 -2.2215 42 1 5.3189 4.0863 -1.3244 43 1 2.9530 4.6941 2.4688 44 1 4.3327 4.8823 1.3601 45 1 3.3529 6.2985 1.8100 46 1 0.8957 6.1800 1.2074 47 1 0.4843 5.2407 -0.2475 48 1 1.3089 6.0734 -2.3934 49 1 0.1567 8.3144 0.2428 50 1 -0.3992 7.4304 -1.1985 51 1 1.6892 9.1691 -1.9698 52 1 1.6652 12.0173 -3.7058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284415780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:08 Heat of formation + Delta-G solvation = -96.836440 kcal Electronic energy + Delta-G solvation = -32019.231497 eV Core-core repulsion = 27826.644185 eV Total energy + Delta-G solvation = -4192.587313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.15808 -38.98420 -37.70331 -36.89094 -34.99702 -33.84569 -33.48954 -32.80365 -31.67221 -31.09297 -29.27043 -26.76928 -26.58862 -25.22781 -24.48557 -23.67976 -22.38590 -21.04901 -20.97516 -19.84288 -18.71851 -17.60243 -17.04637 -16.88331 -16.45623 -15.92367 -15.84759 -15.51302 -14.91645 -14.78461 -14.62836 -14.43891 -14.30365 -13.99706 -13.90350 -13.57372 -13.37424 -13.21794 -13.07551 -12.82219 -12.53597 -12.40695 -12.33534 -12.25074 -11.97499 -11.90210 -11.72171 -11.47441 -11.39689 -11.21540 -11.20704 -11.01920 -10.84614 -10.74998 -10.45077 -10.07575 -9.68000 -9.65812 -9.53782 -9.28694 -8.88808 -8.80535 -8.18159 -6.81752 -5.66212 -2.94934 2.38038 2.50879 3.11672 3.31010 3.49604 3.53990 3.56007 4.16764 4.32409 4.47435 4.49147 4.64196 4.67698 4.68114 4.75478 4.80290 4.82422 4.99228 5.04402 5.08084 5.08569 5.23249 5.25413 5.34197 5.41723 5.47431 5.50027 5.55130 5.56217 5.63071 5.64240 5.68629 5.70687 5.73495 5.86531 5.95189 6.02098 6.02748 6.16035 6.25860 6.38365 6.65522 6.73511 6.90532 7.10255 7.62874 7.77160 8.00753 8.39636 8.52662 8.61086 9.63435 10.23147 10.59396 11.56356 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.002522 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.549796 B =11101.663351 C =11802.809261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.504 3.496 4 O -0.497 6.497 5 N -0.608 5.608 6 C 0.111 3.889 7 C -0.138 4.138 8 C -0.118 4.118 9 C -0.123 4.123 10 C 0.123 3.877 11 H 0.088 0.912 12 C 0.543 3.457 13 O -0.512 6.512 14 N -0.610 5.610 15 C 0.077 3.923 16 C 0.096 3.904 17 C 0.087 3.913 18 H 0.091 0.909 19 O -0.546 6.546 20 C 0.125 3.875 21 N -0.725 5.725 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.931 5.931 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.283 1.283 29 H -0.292 1.292 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.374 0.626 49 H 0.023 0.977 50 H 0.020 0.980 51 H 0.389 0.611 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.366 -28.943 12.074 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.293 3.707 4 O -0.371 6.371 5 N -0.345 5.345 6 C -0.012 4.012 7 C -0.176 4.176 8 C -0.155 4.155 9 C -0.162 4.162 10 C 0.017 3.983 11 H 0.106 0.894 12 C 0.330 3.670 13 O -0.386 6.386 14 N -0.344 5.344 15 C -0.066 4.066 16 C -0.028 4.028 17 C 0.026 3.974 18 H 0.109 0.891 19 O -0.351 6.351 20 C -0.004 4.004 21 N -0.370 5.370 22 C -0.371 4.371 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.579 5.579 26 Si 0.738 3.262 27 H -0.218 1.218 28 H -0.208 1.208 29 H -0.218 1.218 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.096 0.904 47 H 0.105 0.895 48 H 0.221 0.779 49 H 0.041 0.959 50 H 0.038 0.962 51 H 0.223 0.777 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.947 -28.138 11.700 32.056 hybrid contribution -0.697 0.570 -0.262 0.938 sum 9.249 -27.568 11.438 31.247 Atomic orbital electron populations 1.21535 0.92861 1.01439 1.03643 1.21617 0.98736 0.93649 1.03758 1.20867 0.81553 0.92194 0.76127 1.90796 1.54172 1.44974 1.47122 1.48034 1.05753 1.06182 1.74558 1.21763 0.90943 0.89705 0.98802 1.21953 0.98648 0.97881 0.99138 1.21511 0.97506 0.94058 1.02443 1.21831 0.95762 1.00271 0.98320 1.21323 0.94439 0.82380 1.00168 0.89444 1.19493 0.84072 0.80159 0.83233 1.90642 1.49079 1.71424 1.27489 1.47455 1.27142 1.32717 1.27107 1.21791 0.93776 1.02333 0.88716 1.22120 0.87690 0.92326 1.00615 1.22459 0.98247 0.92429 0.84228 0.89111 1.86510 1.43420 1.76132 1.29045 1.21240 0.94539 0.89611 0.94971 1.42252 1.14977 1.21113 1.58636 1.19239 0.93939 0.98908 1.24964 0.91326 1.24753 0.96776 0.98954 1.00610 1.69691 1.18562 1.31624 1.38069 0.86185 0.80385 0.81578 0.78017 1.21754 1.20827 1.21804 0.91692 0.92197 0.92048 0.89086 0.89290 0.89403 0.91162 0.91136 0.90474 0.91011 0.91633 0.90106 0.90148 0.93154 0.91353 0.90826 0.90368 0.89475 0.77869 0.95936 0.96223 0.77693 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.20 37.16 0.34 -0.85 16 2 C -0.14 -1.06 4.78 -27.88 -0.13 -1.19 16 3 C 0.50 5.94 7.39 -10.99 -0.08 5.86 16 4 O -0.50 -8.10 11.68 -19.25 -0.22 -8.32 16 5 N -0.61 -5.87 2.98 -166.50 -0.50 -6.37 16 6 C 0.11 0.60 6.35 -3.69 -0.02 0.58 16 7 C -0.14 -0.73 6.08 -26.61 -0.16 -0.89 16 8 C -0.12 -0.76 5.88 -26.69 -0.16 -0.91 16 9 C -0.12 -1.23 5.32 -26.61 -0.14 -1.38 16 10 C 0.12 1.36 2.90 -68.75 -0.20 1.16 16 11 H 0.09 0.78 5.48 -51.93 -0.28 0.50 16 12 C 0.54 8.30 3.95 -10.99 -0.04 8.26 16 13 O -0.51 -9.78 12.80 -24.17 -0.31 -10.09 16 14 N -0.61 -8.67 2.86 -181.57 -0.52 -9.19 16 15 C 0.08 0.78 10.01 59.84 0.60 1.38 16 16 C 0.10 1.51 5.12 -4.04 -0.02 1.49 16 17 C 0.09 1.63 3.29 -26.73 -0.09 1.54 16 18 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 19 O -0.55 -11.40 11.81 -48.28 -0.57 -11.97 16 20 C 0.13 2.73 5.92 -4.04 -0.02 2.70 16 21 N -0.73 -19.89 5.49 -59.91 -0.33 -20.22 16 22 C -0.24 -7.11 9.99 -15.06 -0.15 -7.26 16 23 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 24 C -0.01 -0.45 5.50 -17.43 -0.10 -0.55 16 25 N -0.93 -29.70 13.06 55.49 0.72 -28.98 16 26 Si 0.91 23.39 29.55 -169.99 -5.02 18.36 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 30 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 33 H 0.09 0.57 7.92 -51.93 -0.41 0.15 16 34 H 0.09 0.45 7.72 -51.93 -0.40 0.05 16 35 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 1.01 7.95 -51.93 -0.41 0.60 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.55 5.98 -51.93 -0.31 0.24 16 45 H 0.07 0.70 8.10 -51.92 -0.42 0.28 16 46 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 47 H 0.09 1.55 7.50 -51.93 -0.39 1.16 16 48 H 0.37 7.58 8.63 45.56 0.39 7.98 16 49 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 51 H 0.39 11.45 7.54 -40.82 -0.31 11.14 16 52 H 0.25 7.79 8.31 -40.82 -0.34 7.45 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -38.58 405.96 -9.32 -47.90 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.31 Total: 12.84 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.38 Total: 9.93 kcal Atomic # 7 Polarization: -64.14 SS G_CDS: -0.62 Total: -64.76 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -1.10 Total: -30.39 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.58 -9.32 -47.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.941 kcal (2) G-P(sol) polarization free energy of solvation -38.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds