Wall clock time and date at job start Wed Apr 1 2020 00:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 O 1.21277 * 119.99814 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00019 * 179.97438 * 3 2 1 6 6 C 1.46965 * 120.65377 * 354.47911 * 5 3 2 7 7 C 1.53192 * 108.88994 * 126.46371 * 6 5 3 8 8 C 1.53041 * 109.31568 * 54.55459 * 7 6 5 9 9 C 1.53042 * 109.53524 * 298.63599 * 8 7 6 10 10 C 1.46924 * 120.63078 * 174.28970 * 5 3 2 11 11 H 1.09004 * 109.58563 * 113.68390 * 10 5 3 12 12 C 1.50700 * 109.58814 * 353.40095 * 10 5 3 13 13 O 1.21280 * 119.99483 * 299.66929 * 12 10 5 14 14 N 1.34773 * 119.99965 * 119.67085 * 12 10 5 15 15 C 1.46495 * 120.00101 * 5.11574 * 14 12 10 16 16 C 1.46506 * 119.99899 * 185.12155 * 14 12 10 17 17 C 1.53000 * 109.47165 * 269.99981 * 16 14 12 18 18 H 1.09000 * 109.46620 * 305.00081 * 17 16 14 19 19 O 1.42898 * 109.47309 * 64.99472 * 17 16 14 20 20 C 1.52998 * 109.47271 * 185.00208 * 17 16 14 21 21 N 1.46500 * 109.46888 * 179.97438 * 20 17 16 22 22 C 1.36942 * 119.99535 * 179.97438 * 21 20 17 23 23 H 1.07995 * 119.99976 * 359.97438 * 22 21 20 24 24 C 1.38809 * 119.99742 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00078 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00049 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47175 * 270.00341 * 26 24 22 28 28 H 1.48497 * 109.47165 * 30.00347 * 26 24 22 29 29 H 1.48500 * 109.47323 * 150.00177 * 26 24 22 30 30 H 1.09001 * 109.47506 * 59.99957 * 1 2 3 31 31 H 1.08999 * 109.47243 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47464 * 299.99952 * 1 2 3 33 33 H 1.09000 * 109.47464 * 240.00048 * 2 1 3 34 34 H 1.09001 * 109.47506 * 120.00043 * 2 1 3 35 35 H 1.08995 * 109.59526 * 6.59880 * 6 5 3 36 36 H 1.09004 * 109.58169 * 246.31508 * 6 5 3 37 37 H 1.09002 * 109.49477 * 294.60415 * 7 6 5 38 38 H 1.09001 * 109.49733 * 174.50684 * 7 6 5 39 39 H 1.09003 * 109.46192 * 178.61831 * 8 7 6 40 40 H 1.08992 * 109.44883 * 58.64754 * 8 7 6 41 41 H 1.09001 * 109.50241 * 301.41070 * 9 8 7 42 42 H 1.09005 * 109.49506 * 181.31450 * 9 8 7 43 43 H 1.08999 * 109.47401 * 266.74974 * 15 14 12 44 44 H 1.08993 * 109.47297 * 26.75814 * 15 14 12 45 45 H 1.09007 * 109.47024 * 146.75570 * 15 14 12 46 46 H 1.09000 * 109.47342 * 149.99561 * 16 14 12 47 47 H 1.09006 * 109.46872 * 29.99703 * 16 14 12 48 48 H 0.96704 * 113.99832 * 60.00091 * 19 17 16 49 49 H 1.08994 * 109.47286 * 59.99152 * 20 17 16 50 50 H 1.09001 * 109.46482 * 299.99738 * 20 17 16 51 51 H 0.96999 * 120.00535 * 359.97438 * 21 20 17 52 52 H 0.97006 * 120.00265 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 4.3239 0.5669 0.1227 7 6 5.3198 0.6503 -1.0383 8 6 5.9529 2.0434 -1.0630 9 6 4.8645 3.0964 -1.2836 10 6 3.8634 3.0407 -0.1253 11 1 4.3590 3.3337 0.8003 12 6 2.7167 3.9782 -0.4030 13 8 2.0398 3.8300 -1.3983 14 7 2.4436 4.9813 0.4547 15 6 3.3271 5.2299 1.5964 16 6 1.2629 5.8231 0.2452 17 6 1.6382 7.0186 -0.6328 18 1 2.4769 7.5503 -0.1834 19 8 2.0089 6.5568 -1.9333 20 6 0.4394 7.9622 -0.7491 21 7 0.7990 9.1072 -1.5893 22 6 -0.1215 10.0901 -1.8376 23 1 -1.1127 10.0210 -1.4143 24 6 0.2193 11.1753 -2.6332 25 7 1.4271 11.2592 -3.1495 26 14 -1.0366 12.5158 -2.9724 27 1 -1.8050 12.1758 -4.1969 28 1 -1.9661 12.6265 -1.8196 29 1 -0.3373 13.8107 -3.1705 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.7983 -0.3873 0.0855 36 1 4.8579 0.6531 1.0691 37 1 4.7982 0.4711 -1.9785 38 1 6.0983 -0.1008 -0.9046 39 1 6.6800 2.0975 -1.8733 40 1 6.4531 2.2316 -0.1131 41 1 4.3472 2.8941 -2.2215 42 1 5.3189 4.0863 -1.3244 43 1 2.9530 4.6941 2.4688 44 1 4.3327 4.8823 1.3601 45 1 3.3529 6.2985 1.8100 46 1 0.8957 6.1800 1.2074 47 1 0.4843 5.2407 -0.2475 48 1 1.3089 6.0734 -2.3934 49 1 0.1567 8.3144 0.2428 50 1 -0.3992 7.4304 -1.1985 51 1 1.6892 9.1691 -1.9698 52 1 1.6652 12.0173 -3.7058 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284415780.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:06 Heat of formation + Delta-G solvation = -125.330409 kcal Electronic energy + Delta-G solvation = -32020.467089 eV Core-core repulsion = 27826.644185 eV Total energy + Delta-G solvation = -4193.822904 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -42.04326 -40.09875 -38.66783 -38.20952 -36.30165 -35.84054 -34.24851 -33.46696 -33.22802 -32.36005 -30.79407 -28.02688 -27.45766 -26.55690 -25.13140 -24.98341 -23.82982 -22.62780 -21.70182 -20.76466 -19.56621 -19.26425 -18.53775 -17.86891 -17.65384 -17.03972 -16.78447 -16.51868 -16.44592 -16.36572 -15.87856 -15.34042 -15.17174 -15.15136 -14.94185 -14.75337 -14.50256 -14.33816 -14.16399 -14.00674 -13.84286 -13.69995 -13.36518 -13.13311 -13.04135 -12.98449 -12.79015 -12.66199 -12.60635 -12.40420 -12.18952 -12.06663 -12.02980 -12.01668 -11.84094 -11.73669 -11.60206 -11.13561 -11.00639 -10.58962 -10.42689 -9.67123 -9.37463 -9.05298 -7.97158 -5.27954 1.43694 1.47324 1.55636 1.56329 1.69268 2.06092 2.34680 2.53516 3.32543 3.37559 3.50041 3.74009 3.77743 3.79025 3.87786 3.98377 4.05115 4.09347 4.15475 4.17113 4.22459 4.22851 4.30783 4.44522 4.47541 4.48597 4.63569 4.64429 4.71442 4.77815 4.80461 4.85708 4.86954 4.87815 4.93034 5.02125 5.06297 5.13115 5.19605 5.22167 5.30896 5.42795 5.43469 5.50418 5.60013 6.23105 6.38948 6.54836 6.75473 7.19661 7.29292 7.52231 8.04358 8.29237 9.26369 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018302 B = 0.002522 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.549796 B =11101.663351 C =11802.809261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.489 3.511 4 O -0.553 6.553 5 N -0.606 5.606 6 C 0.103 3.897 7 C -0.135 4.135 8 C -0.112 4.112 9 C -0.120 4.120 10 C 0.125 3.875 11 H 0.115 0.885 12 C 0.532 3.468 13 O -0.562 6.562 14 N -0.616 5.616 15 C 0.070 3.930 16 C 0.110 3.890 17 C 0.100 3.900 18 H 0.091 0.909 19 O -0.562 6.562 20 C 0.125 3.875 21 N -0.740 5.740 22 C -0.251 4.251 23 H 0.076 0.924 24 C -0.078 4.078 25 N -0.970 5.970 26 Si 0.980 3.020 27 H -0.288 1.288 28 H -0.266 1.266 29 H -0.292 1.292 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.126 0.874 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.052 0.948 38 H 0.108 0.892 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.103 0.897 47 H 0.061 0.939 48 H 0.373 0.627 49 H 0.039 0.961 50 H 0.016 0.984 51 H 0.375 0.625 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.627 -31.031 14.393 36.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.278 3.722 4 O -0.430 6.430 5 N -0.342 5.342 6 C -0.017 4.017 7 C -0.173 4.173 8 C -0.150 4.150 9 C -0.159 4.159 10 C 0.019 3.981 11 H 0.132 0.868 12 C 0.321 3.679 13 O -0.440 6.440 14 N -0.349 5.349 15 C -0.072 4.072 16 C -0.015 4.015 17 C 0.039 3.961 18 H 0.109 0.891 19 O -0.367 6.367 20 C -0.003 4.003 21 N -0.383 5.383 22 C -0.382 4.382 23 H 0.094 0.906 24 C -0.270 4.270 25 N -0.621 5.621 26 Si 0.808 3.192 27 H -0.215 1.215 28 H -0.191 1.191 29 H -0.218 1.218 30 H 0.050 0.950 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.071 0.929 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.121 0.879 47 H 0.080 0.920 48 H 0.220 0.780 49 H 0.057 0.943 50 H 0.034 0.966 51 H 0.207 0.793 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.242 -30.283 14.082 35.239 hybrid contribution -1.071 1.162 -0.966 1.852 sum 10.171 -29.122 13.116 33.519 Atomic orbital electron populations 1.21510 0.94118 1.02426 1.01246 1.21671 0.97564 0.91343 1.06296 1.21704 0.81887 0.93361 0.75200 1.90771 1.55653 1.46791 1.49824 1.48226 1.05989 1.06558 1.73396 1.22160 0.90462 0.89140 0.99963 1.21963 0.99235 0.97770 0.98345 1.21523 0.96230 0.93487 1.03749 1.21801 0.96400 1.01358 0.96368 1.21325 0.92752 0.82569 1.01458 0.86755 1.20331 0.84563 0.80502 0.82470 1.90605 1.51071 1.72642 1.29683 1.47620 1.27068 1.32130 1.28121 1.22064 0.94142 1.03201 0.87745 1.21795 0.88095 0.90899 1.00682 1.22396 0.96838 0.92945 0.83916 0.89107 1.86480 1.43727 1.76171 1.30357 1.21403 0.95766 0.88571 0.94510 1.42446 1.14068 1.22335 1.59412 1.19676 0.94531 0.99437 1.24589 0.90587 1.25684 0.98915 1.01619 1.00818 1.69866 1.20710 1.32399 1.39077 0.85046 0.77914 0.78077 0.78130 1.21478 1.19099 1.21788 0.94963 0.89345 0.93633 0.87213 0.85598 0.87026 0.88563 0.92921 0.87355 0.90630 0.89402 0.93745 0.90992 0.91386 0.89191 0.90239 0.87904 0.92048 0.78019 0.94274 0.96602 0.79348 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.20 71.98 0.66 -1.66 16 2 C -0.13 -1.73 4.78 29.85 0.14 -1.58 16 3 C 0.49 11.29 7.39 87.66 0.65 11.93 16 4 O -0.55 -18.81 11.68 20.70 0.24 -18.57 16 5 N -0.61 -10.69 2.98 -799.08 -2.38 -13.07 16 6 C 0.10 0.72 6.35 86.36 0.55 1.27 16 7 C -0.14 -1.00 6.08 30.67 0.19 -0.81 16 8 C -0.11 -1.18 5.88 30.62 0.18 -1.00 16 9 C -0.12 -2.40 5.32 30.67 0.16 -2.23 16 10 C 0.13 2.65 2.90 44.23 0.13 2.78 16 11 H 0.12 1.75 5.48 -2.39 -0.01 1.73 16 12 C 0.53 16.74 3.95 87.66 0.35 17.09 16 13 O -0.56 -23.03 12.80 25.39 0.33 -22.71 16 14 N -0.62 -17.56 2.86 -846.75 -2.42 -19.97 16 15 C 0.07 1.28 10.01 127.77 1.28 2.56 16 16 C 0.11 3.53 5.12 86.38 0.44 3.98 16 17 C 0.10 3.82 3.29 30.59 0.10 3.92 16 18 H 0.09 3.48 8.14 -2.39 -0.02 3.47 16 19 O -0.56 -24.80 11.81 -136.51 -1.61 -26.41 16 20 C 0.13 5.55 5.92 86.38 0.51 6.06 16 21 N -0.74 -41.53 5.49 -343.46 -1.89 -43.42 16 22 C -0.25 -15.05 9.99 84.03 0.84 -14.21 16 23 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 24 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 25 N -0.97 -63.19 13.06 21.65 0.28 -62.91 16 26 Si 0.98 48.48 29.55 68.60 2.03 50.51 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 29 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 30 H 0.03 0.74 8.10 -2.39 -0.02 0.72 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.11 1.07 7.92 -2.39 -0.02 1.05 16 34 H 0.13 0.76 7.72 -2.39 -0.02 0.74 16 35 H 0.11 0.28 5.93 -2.39 -0.01 0.26 16 36 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 37 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 40 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.04 1.19 7.95 -2.39 -0.02 1.17 16 42 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 1.22 5.98 -2.39 -0.01 1.21 16 45 H 0.08 1.37 8.10 -2.38 -0.02 1.35 16 46 H 0.10 2.75 8.07 -2.39 -0.02 2.73 16 47 H 0.06 2.32 7.50 -2.38 -0.02 2.30 16 48 H 0.37 16.37 8.63 -74.05 -0.64 15.73 16 49 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.37 22.82 7.54 -92.71 -0.70 22.12 16 52 H 0.25 15.76 8.31 -92.70 -0.77 14.99 16 Total: -1.00 -89.30 405.96 0.80 -88.49 By element: Atomic # 1 Polarization: 44.70 SS G_CDS: -0.42 Total: 44.29 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: 6.64 Total: 23.78 kcal Atomic # 7 Polarization: -132.97 SS G_CDS: -6.40 Total: -139.38 kcal Atomic # 8 Polarization: -66.65 SS G_CDS: -1.05 Total: -67.69 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -89.30 0.80 -88.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284415780.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.839 kcal (2) G-P(sol) polarization free energy of solvation -89.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds