Wall clock time and date at job start Wed Apr 1 2020 00:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47271 * 2 1 4 4 O 1.21282 * 119.99893 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63096 * 359.72569 * 5 3 2 7 7 C 1.52754 * 109.00679 * 233.58170 * 6 5 3 8 8 C 1.53037 * 109.38604 * 305.58562 * 7 6 5 9 9 C 1.53043 * 109.53958 * 61.23779 * 8 7 6 10 10 H 1.09006 * 109.49455 * 58.58798 * 9 8 7 11 11 C 1.50700 * 109.50132 * 178.68929 * 9 8 7 12 12 O 1.21281 * 119.99933 * 6.96738 * 11 9 8 13 13 N 1.34774 * 119.99879 * 186.97391 * 11 9 8 14 14 C 1.46496 * 120.00134 * 6.37421 * 13 11 9 15 15 C 1.46500 * 119.99622 * 186.37757 * 13 11 9 16 16 C 1.53000 * 109.47302 * 89.99897 * 15 13 11 17 17 H 1.08997 * 109.47129 * 59.99703 * 16 15 13 18 18 O 1.42899 * 109.46721 * 299.99809 * 16 15 13 19 19 C 1.53001 * 109.47474 * 179.97438 * 16 15 13 20 20 N 1.46498 * 109.47265 * 184.99781 * 19 16 15 21 21 C 1.36944 * 119.99727 * 179.97438 * 20 19 16 22 22 H 1.07997 * 119.99884 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99584 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99652 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99980 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47308 * 90.00565 * 25 23 21 27 27 H 1.48508 * 109.46829 * 209.99963 * 25 23 21 28 28 H 1.48493 * 109.47546 * 329.99910 * 25 23 21 29 29 C 1.46928 * 120.63272 * 179.97438 * 5 3 2 30 30 H 1.09006 * 109.46852 * 60.00235 * 1 2 3 31 31 H 1.08999 * 109.47078 * 300.00475 * 1 2 3 32 32 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46852 * 119.99765 * 2 1 3 34 34 H 1.08999 * 109.47534 * 239.99799 * 2 1 3 35 35 H 1.08997 * 109.58370 * 353.41005 * 6 5 3 36 36 H 1.08992 * 109.59267 * 113.83653 * 6 5 3 37 37 H 1.09005 * 109.56687 * 185.55022 * 7 6 5 38 38 H 1.09003 * 109.39477 * 65.51154 * 7 6 5 39 39 H 1.09007 * 109.45930 * 301.22022 * 8 7 6 40 40 H 1.09000 * 109.45552 * 181.25775 * 8 7 6 41 41 H 1.09000 * 109.47389 * 84.41014 * 14 13 11 42 42 H 1.08998 * 109.46858 * 204.40750 * 14 13 11 43 43 H 1.08997 * 109.47375 * 324.40617 * 14 13 11 44 44 H 1.09000 * 109.47199 * 209.99650 * 15 13 11 45 45 H 1.08997 * 109.47271 * 329.99686 * 15 13 11 46 46 H 0.96703 * 114.00323 * 299.99587 * 18 16 15 47 47 H 1.09003 * 109.46883 * 305.00318 * 19 16 15 48 48 H 1.09004 * 109.47083 * 64.99388 * 19 16 15 49 49 H 0.96999 * 120.00208 * 0.02562 * 20 19 16 50 50 H 0.97000 * 119.99711 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.58675 * 246.16245 * 29 5 3 52 52 H 1.09008 * 109.58204 * 6.57957 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3244 0.5609 0.0071 7 6 5.2959 0.7563 1.1697 8 6 5.9304 2.1457 1.0734 9 6 4.8391 3.2144 1.1687 10 1 4.3021 3.1030 2.1107 11 6 5.4680 4.5825 1.1062 12 8 6.6522 4.6953 0.8699 13 7 4.7145 5.6806 1.3129 14 6 3.3186 5.5423 1.7352 15 6 5.2915 7.0127 1.1152 16 6 5.0770 7.4513 -0.3348 17 1 4.0091 7.4822 -0.5508 18 8 5.7139 6.5212 -1.2129 19 6 5.6789 8.8427 -0.5411 20 7 5.3700 9.3128 -1.8938 21 6 5.8085 10.5422 -2.3082 22 1 6.3824 11.1649 -1.6380 23 6 5.5153 10.9878 -3.5897 24 7 5.9372 12.1691 -3.9882 25 14 4.5232 9.9103 -4.7491 26 1 3.0773 10.2056 -4.5838 27 1 4.9279 10.1878 -6.1507 28 1 4.7757 8.4812 -4.4346 29 6 3.8625 3.0468 0.0000 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 3.7967 -0.3850 0.1289 36 1 4.8786 0.5543 -0.9313 37 1 6.0760 -0.0037 1.1252 38 1 4.7552 0.6679 2.1120 39 1 6.4507 2.2420 0.1204 40 1 6.6404 2.2779 1.8898 41 1 3.2763 5.4260 2.8181 42 1 2.7608 6.4321 1.4433 43 1 2.8798 4.6658 1.2583 44 1 4.8056 7.7221 1.7851 45 1 6.3593 6.9818 1.3313 46 1 6.6681 6.4420 -1.0770 47 1 5.2565 9.5332 0.1890 48 1 6.7601 8.7937 -0.4115 49 1 4.8542 8.7537 -2.4956 50 1 5.7326 12.4804 -4.8839 51 1 4.3783 3.2468 -0.9392 52 1 3.0299 3.7407 0.1168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284417352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:24 Heat of formation + Delta-G solvation = -104.801546 kcal Electronic energy + Delta-G solvation = -31408.723501 eV Core-core repulsion = 27215.790795 eV Total energy + Delta-G solvation = -4192.932706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.04223 -39.89272 -37.88805 -37.11429 -35.43403 -34.13570 -33.70054 -32.86518 -31.91262 -31.36091 -29.61012 -27.13519 -26.40707 -26.04612 -24.46701 -23.51023 -22.46924 -21.36736 -21.16569 -19.34537 -19.15604 -17.71983 -17.66384 -17.22720 -16.63497 -16.43701 -16.10301 -15.74538 -15.35555 -15.06300 -14.81762 -14.57488 -14.43006 -14.30247 -13.87680 -13.62743 -13.58602 -13.31029 -13.23469 -13.05634 -12.89280 -12.59055 -12.48085 -12.34669 -12.18331 -12.14322 -11.86481 -11.58972 -11.56808 -11.36618 -11.28317 -11.21636 -10.97308 -10.83034 -10.78122 -10.21665 -10.14869 -9.93785 -9.68979 -9.53980 -9.05649 -8.88473 -8.58739 -7.20617 -5.74107 -3.09432 2.22930 2.36896 2.69516 2.87250 3.43295 3.50258 3.51221 4.02374 4.13553 4.37074 4.45168 4.49147 4.57666 4.62887 4.64211 4.67049 4.72752 4.80030 4.87246 4.92226 4.98130 5.04129 5.14319 5.23474 5.24966 5.29532 5.37231 5.41172 5.44400 5.46730 5.51858 5.53326 5.59335 5.65093 5.67639 5.80772 5.83744 5.84538 5.94747 5.95365 6.04019 6.36675 6.46395 6.65063 6.97586 7.24470 7.79965 7.98766 8.05116 8.08630 8.44893 9.24741 9.97205 10.17430 11.44101 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002686 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.167345 B =10423.122255 C =11458.221319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.538 6.538 5 N -0.613 5.613 6 C 0.103 3.897 7 C -0.135 4.135 8 C -0.101 4.101 9 C -0.119 4.119 10 H 0.095 0.905 11 C 0.529 3.471 12 O -0.532 6.532 13 N -0.608 5.608 14 C 0.065 3.935 15 C 0.084 3.916 16 C 0.082 3.918 17 H 0.096 0.904 18 O -0.553 6.553 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.115 3.885 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.376 0.624 47 H 0.034 0.966 48 H 0.030 0.970 49 H 0.365 0.635 50 H 0.259 0.741 51 H 0.079 0.921 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.625 -30.491 15.440 34.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.414 6.414 5 N -0.347 5.347 6 C -0.019 4.019 7 C -0.173 4.173 8 C -0.139 4.139 9 C -0.141 4.141 10 H 0.113 0.887 11 C 0.316 3.684 12 O -0.408 6.408 13 N -0.341 5.341 14 C -0.078 4.078 15 C -0.040 4.040 16 C 0.021 3.979 17 H 0.113 0.887 18 O -0.358 6.358 19 C 0.002 3.998 20 N -0.395 5.395 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.199 1.199 29 C -0.007 4.007 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.223 0.777 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.199 0.801 50 H 0.069 0.931 51 H 0.097 0.903 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.926 -29.777 15.094 34.095 hybrid contribution -0.108 -0.419 -0.606 0.744 sum -7.034 -30.195 14.488 34.222 Atomic orbital electron populations 1.21549 0.92878 1.01640 1.03519 1.21666 0.98716 0.93722 1.04166 1.20850 0.81424 0.92082 0.75511 1.90715 1.54672 1.46582 1.49475 1.48153 1.05755 1.07043 1.73764 1.21748 0.91170 0.89526 0.99495 1.21878 0.98912 0.97931 0.98612 1.21347 0.96394 0.91949 1.04170 1.21676 0.98208 0.93312 1.00924 0.88718 1.20232 0.86587 0.85559 0.76030 1.90670 1.15385 1.86713 1.48057 1.47686 1.12365 1.06143 1.67891 1.22109 0.81759 1.04129 0.99822 1.22254 1.00934 0.82937 0.97853 1.22555 0.98168 0.89187 0.87968 0.88660 1.86509 1.25864 1.63098 1.60318 1.21207 0.97729 0.91998 0.88833 1.42591 1.66546 1.19295 1.11100 1.19051 1.28531 0.91912 0.98022 0.89310 1.24662 1.00615 0.96639 0.97180 1.69708 1.50640 1.18831 1.19067 0.86545 0.80352 0.80803 0.80974 1.21120 1.21739 1.19851 1.21720 0.97836 0.83508 0.97681 0.91865 0.91931 0.92038 0.88915 0.88878 0.89409 0.90829 0.89953 0.91411 0.90459 0.90790 0.92544 0.90359 0.90206 0.89454 0.89157 0.77664 0.94862 0.95256 0.80132 0.93070 0.90314 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.16 0.34 -0.53 16 2 C -0.14 -0.79 4.77 -27.88 -0.13 -0.93 16 3 C 0.51 4.80 7.70 -10.99 -0.08 4.72 16 4 O -0.54 -7.17 15.39 5.56 0.09 -7.09 16 5 N -0.61 -5.06 2.98 -173.01 -0.52 -5.58 16 6 C 0.10 0.53 6.31 -3.94 -0.02 0.51 16 7 C -0.14 -0.69 6.06 -26.84 -0.16 -0.85 16 8 C -0.10 -0.81 4.47 -26.69 -0.12 -0.93 16 9 C -0.12 -1.10 1.86 -91.63 -0.17 -1.27 16 10 H 0.09 0.78 7.76 -51.93 -0.40 0.38 16 11 C 0.53 6.50 6.37 -10.99 -0.07 6.43 16 12 O -0.53 -8.12 14.81 5.00 0.07 -8.04 16 13 N -0.61 -6.98 2.83 -181.58 -0.51 -7.49 16 14 C 0.06 0.58 9.94 59.84 0.59 1.17 16 15 C 0.08 1.05 5.15 -4.04 -0.02 1.03 16 16 C 0.08 1.30 3.27 -26.73 -0.09 1.21 16 17 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 18 O -0.55 -9.68 12.24 -35.79 -0.44 -10.12 16 19 C 0.13 2.53 5.90 -4.04 -0.02 2.51 16 20 N -0.75 -18.59 5.35 -59.91 -0.32 -18.91 16 21 C -0.25 -7.18 10.47 -15.06 -0.16 -7.34 16 22 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 23 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 24 N -0.93 -30.10 13.97 55.49 0.78 -29.33 16 25 Si 0.88 23.14 27.73 -169.99 -4.71 18.43 16 26 H -0.28 -7.36 7.11 56.52 0.40 -6.95 16 27 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 28 H -0.27 -6.94 6.52 56.52 0.37 -6.57 16 29 C 0.11 1.16 5.41 -3.69 -0.02 1.14 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.03 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.32 7.68 -51.93 -0.40 -0.08 16 34 H 0.09 0.37 7.95 -51.93 -0.41 -0.04 16 35 H 0.09 0.25 5.93 -51.93 -0.31 -0.06 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.67 8.03 -51.93 -0.42 0.26 16 43 H 0.08 0.73 4.15 -51.93 -0.22 0.52 16 44 H 0.09 0.92 8.07 -51.93 -0.42 0.50 16 45 H 0.09 1.20 7.34 -51.93 -0.38 0.82 16 46 H 0.38 6.17 8.67 45.56 0.40 6.57 16 47 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 48 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.37 9.14 5.53 -40.82 -0.23 8.91 16 50 H 0.26 7.94 8.31 -40.82 -0.34 7.60 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 52 H 0.11 1.21 4.18 -51.92 -0.22 0.99 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -37.25 405.76 -7.77 -45.01 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -8.08 Total: 10.07 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.23 Total: 6.92 kcal Atomic # 7 Polarization: -60.73 SS G_CDS: -0.57 Total: -61.30 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.28 Total: -25.25 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.71 Total: 18.43 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -37.25 -7.77 -45.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.788 kcal (2) G-P(sol) polarization free energy of solvation -37.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds