Wall clock time and date at job start Wed Apr 1 2020 00:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47271 * 2 1 4 4 O 1.21282 * 119.99893 * 359.97438 * 3 2 1 5 5 N 1.34775 * 120.00130 * 179.97438 * 3 2 1 6 6 C 1.46925 * 120.63096 * 359.72569 * 5 3 2 7 7 C 1.52754 * 109.00679 * 233.58170 * 6 5 3 8 8 C 1.53037 * 109.38604 * 305.58562 * 7 6 5 9 9 C 1.53043 * 109.53958 * 61.23779 * 8 7 6 10 10 H 1.09006 * 109.49455 * 58.58798 * 9 8 7 11 11 C 1.50700 * 109.50132 * 178.68929 * 9 8 7 12 12 O 1.21281 * 119.99933 * 6.96738 * 11 9 8 13 13 N 1.34774 * 119.99879 * 186.97391 * 11 9 8 14 14 C 1.46496 * 120.00134 * 6.37421 * 13 11 9 15 15 C 1.46500 * 119.99622 * 186.37757 * 13 11 9 16 16 C 1.53000 * 109.47302 * 89.99897 * 15 13 11 17 17 H 1.08997 * 109.47129 * 59.99703 * 16 15 13 18 18 O 1.42899 * 109.46721 * 299.99809 * 16 15 13 19 19 C 1.53001 * 109.47474 * 179.97438 * 16 15 13 20 20 N 1.46498 * 109.47265 * 184.99781 * 19 16 15 21 21 C 1.36944 * 119.99727 * 179.97438 * 20 19 16 22 22 H 1.07997 * 119.99884 * 0.02562 * 21 20 19 23 23 C 1.38813 * 119.99584 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99652 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 119.99980 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47308 * 90.00565 * 25 23 21 27 27 H 1.48508 * 109.46829 * 209.99963 * 25 23 21 28 28 H 1.48493 * 109.47546 * 329.99910 * 25 23 21 29 29 C 1.46928 * 120.63272 * 179.97438 * 5 3 2 30 30 H 1.09006 * 109.46852 * 60.00235 * 1 2 3 31 31 H 1.08999 * 109.47078 * 300.00475 * 1 2 3 32 32 H 1.08996 * 109.47356 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46852 * 119.99765 * 2 1 3 34 34 H 1.08999 * 109.47534 * 239.99799 * 2 1 3 35 35 H 1.08997 * 109.58370 * 353.41005 * 6 5 3 36 36 H 1.08992 * 109.59267 * 113.83653 * 6 5 3 37 37 H 1.09005 * 109.56687 * 185.55022 * 7 6 5 38 38 H 1.09003 * 109.39477 * 65.51154 * 7 6 5 39 39 H 1.09007 * 109.45930 * 301.22022 * 8 7 6 40 40 H 1.09000 * 109.45552 * 181.25775 * 8 7 6 41 41 H 1.09000 * 109.47389 * 84.41014 * 14 13 11 42 42 H 1.08998 * 109.46858 * 204.40750 * 14 13 11 43 43 H 1.08997 * 109.47375 * 324.40617 * 14 13 11 44 44 H 1.09000 * 109.47199 * 209.99650 * 15 13 11 45 45 H 1.08997 * 109.47271 * 329.99686 * 15 13 11 46 46 H 0.96703 * 114.00323 * 299.99587 * 18 16 15 47 47 H 1.09003 * 109.46883 * 305.00318 * 19 16 15 48 48 H 1.09004 * 109.47083 * 64.99388 * 19 16 15 49 49 H 0.96999 * 120.00208 * 0.02562 * 20 19 16 50 50 H 0.97000 * 119.99711 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.58675 * 246.16245 * 29 5 3 52 52 H 1.09008 * 109.58204 * 6.57957 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3244 0.5609 0.0071 7 6 5.2959 0.7563 1.1697 8 6 5.9304 2.1457 1.0734 9 6 4.8391 3.2144 1.1687 10 1 4.3021 3.1030 2.1107 11 6 5.4680 4.5825 1.1062 12 8 6.6522 4.6953 0.8699 13 7 4.7145 5.6806 1.3129 14 6 3.3186 5.5423 1.7352 15 6 5.2915 7.0127 1.1152 16 6 5.0770 7.4513 -0.3348 17 1 4.0091 7.4822 -0.5508 18 8 5.7139 6.5212 -1.2129 19 6 5.6789 8.8427 -0.5411 20 7 5.3700 9.3128 -1.8938 21 6 5.8085 10.5422 -2.3082 22 1 6.3824 11.1649 -1.6380 23 6 5.5153 10.9878 -3.5897 24 7 5.9372 12.1691 -3.9882 25 14 4.5232 9.9103 -4.7491 26 1 3.0773 10.2056 -4.5838 27 1 4.9279 10.1878 -6.1507 28 1 4.7757 8.4812 -4.4346 29 6 3.8625 3.0468 0.0000 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 3.7967 -0.3850 0.1289 36 1 4.8786 0.5543 -0.9313 37 1 6.0760 -0.0037 1.1252 38 1 4.7552 0.6679 2.1120 39 1 6.4507 2.2420 0.1204 40 1 6.6404 2.2779 1.8898 41 1 3.2763 5.4260 2.8181 42 1 2.7608 6.4321 1.4433 43 1 2.8798 4.6658 1.2583 44 1 4.8056 7.7221 1.7851 45 1 6.3593 6.9818 1.3313 46 1 6.6681 6.4420 -1.0770 47 1 5.2565 9.5332 0.1890 48 1 6.7601 8.7937 -0.4115 49 1 4.8542 8.7537 -2.4956 50 1 5.7326 12.4804 -4.8839 51 1 4.3783 3.2468 -0.9392 52 1 3.0299 3.7407 0.1168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284417352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:23 Heat of formation + Delta-G solvation = -133.470787 kcal Electronic energy + Delta-G solvation = -31409.966692 eV Core-core repulsion = 27215.790795 eV Total energy + Delta-G solvation = -4194.175897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.82433 -40.74475 -39.00927 -38.06242 -36.55661 -35.98848 -34.36936 -33.53159 -33.41012 -32.52490 -30.96745 -28.17161 -27.35236 -26.94140 -25.41407 -24.25174 -23.89122 -22.83847 -22.01345 -20.15809 -19.86578 -19.81379 -18.37107 -18.14013 -17.78001 -17.23196 -16.88690 -16.68014 -16.53268 -16.45654 -16.10727 -15.74176 -15.30384 -15.15631 -14.98933 -14.86098 -14.51464 -14.40486 -14.26022 -14.01790 -13.90386 -13.75401 -13.57977 -13.33501 -13.11269 -13.03905 -12.87135 -12.67153 -12.60889 -12.48836 -12.31750 -12.02221 -12.00709 -11.93495 -11.88935 -11.83186 -11.62712 -11.24772 -11.05422 -10.96496 -10.66408 -9.73921 -9.60531 -9.35489 -8.07864 -5.40841 1.34598 1.36639 1.43150 1.45250 1.63463 1.92403 2.04454 2.43801 3.21717 3.32132 3.44375 3.46835 3.61459 3.73880 3.78427 3.93238 3.99729 4.03779 4.11581 4.14863 4.18327 4.20717 4.26700 4.27970 4.43846 4.48600 4.56439 4.57552 4.66387 4.69662 4.73659 4.79373 4.86901 4.90794 4.96840 4.99617 5.07684 5.08488 5.13893 5.16181 5.33365 5.36482 5.42740 5.47459 5.69477 6.16280 6.32470 6.37800 6.70100 7.02676 7.12325 7.14028 7.79199 7.97437 9.13492 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002686 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.167345 B =10423.122255 C =11458.221319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.504 3.496 4 O -0.587 6.587 5 N -0.610 5.610 6 C 0.098 3.902 7 C -0.126 4.126 8 C -0.100 4.100 9 C -0.107 4.107 10 H 0.111 0.889 11 C 0.521 3.479 12 O -0.567 6.567 13 N -0.608 5.608 14 C 0.063 3.937 15 C 0.092 3.908 16 C 0.093 3.907 17 H 0.095 0.905 18 O -0.566 6.566 19 C 0.127 3.873 20 N -0.755 5.755 21 C -0.236 4.236 22 H 0.060 0.940 23 C -0.061 4.061 24 N -0.981 5.981 25 Si 0.954 3.046 26 H -0.276 1.276 27 H -0.293 1.293 28 H -0.262 1.262 29 C 0.120 3.880 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.378 0.622 47 H 0.046 0.954 48 H 0.027 0.973 49 H 0.365 0.635 50 H 0.259 0.741 51 H 0.056 0.944 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.759 -34.152 16.699 38.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.295 3.705 4 O -0.468 6.468 5 N -0.343 5.343 6 C -0.024 4.024 7 C -0.164 4.164 8 C -0.138 4.138 9 C -0.129 4.129 10 H 0.128 0.872 11 C 0.309 3.691 12 O -0.446 6.446 13 N -0.340 5.340 14 C -0.079 4.079 15 C -0.032 4.032 16 C 0.033 3.967 17 H 0.113 0.887 18 O -0.372 6.372 19 C 0.000 4.000 20 N -0.400 5.400 21 C -0.366 4.366 22 H 0.078 0.922 23 C -0.253 4.253 24 N -0.631 5.631 25 Si 0.781 3.219 26 H -0.202 1.202 27 H -0.219 1.219 28 H -0.187 1.187 29 C -0.004 4.004 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.132 0.868 45 H 0.101 0.899 46 H 0.227 0.773 47 H 0.064 0.936 48 H 0.045 0.955 49 H 0.199 0.801 50 H 0.068 0.932 51 H 0.074 0.926 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.062 -33.498 16.402 38.159 hybrid contribution 0.304 0.752 -0.920 1.226 sum -7.758 -32.746 15.482 37.043 Atomic orbital electron populations 1.21554 0.93744 1.02628 1.01731 1.21746 0.97885 0.91216 1.06667 1.21647 0.81195 0.93305 0.74360 1.90692 1.55915 1.48349 1.51808 1.48264 1.06186 1.06901 1.72979 1.22041 0.90944 0.89740 0.99653 1.21857 0.99346 0.96192 0.99017 1.21351 0.95979 0.93610 1.02874 1.21623 0.98288 0.91863 1.01166 0.87153 1.20822 0.86303 0.86761 0.75168 1.90648 1.16968 1.87334 1.49638 1.47777 1.13313 1.05513 1.67376 1.22260 0.80152 1.04318 1.01195 1.22070 1.01054 0.84208 0.95829 1.22467 0.97478 0.86862 0.89926 0.88676 1.86487 1.26236 1.63333 1.61194 1.21426 0.97906 0.94339 0.86365 1.42632 1.66376 1.17868 1.13172 1.19063 1.27046 0.93030 0.97509 0.92185 1.25461 1.02546 0.98144 0.99135 1.69871 1.52745 1.20925 1.19602 0.85424 0.78909 0.79284 0.78260 1.20159 1.21910 1.18686 1.21470 0.97152 0.84886 0.96871 0.94056 0.93417 0.89547 0.85795 0.86575 0.85971 0.90808 0.87784 0.90338 0.92398 0.91344 0.90256 0.89826 0.90481 0.86848 0.89934 0.77336 0.93594 0.95465 0.80135 0.93217 0.92607 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.20 71.98 0.66 -0.84 16 2 C -0.14 -1.06 4.77 29.85 0.14 -0.92 16 3 C 0.50 8.65 7.70 87.66 0.67 9.32 16 4 O -0.59 -15.65 15.39 -3.03 -0.05 -15.69 16 5 N -0.61 -9.01 2.98 -819.68 -2.44 -11.45 16 6 C 0.10 0.70 6.31 86.22 0.54 1.24 16 7 C -0.13 -0.88 6.06 30.52 0.19 -0.70 16 8 C -0.10 -1.49 4.47 30.62 0.14 -1.36 16 9 C -0.11 -1.88 1.86 -11.45 -0.02 -1.90 16 10 H 0.11 1.60 7.76 -2.38 -0.02 1.58 16 11 C 0.52 12.57 6.37 87.66 0.56 13.13 16 12 O -0.57 -17.43 14.81 -2.50 -0.04 -17.47 16 13 N -0.61 -13.28 2.83 -846.78 -2.39 -15.67 16 14 C 0.06 1.02 9.94 127.77 1.27 2.29 16 15 C 0.09 2.20 5.15 86.38 0.45 2.64 16 16 C 0.09 2.87 3.27 30.59 0.10 2.97 16 17 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 18 O -0.57 -19.75 12.24 -148.45 -1.82 -21.57 16 19 C 0.13 4.84 5.90 86.38 0.51 5.35 16 20 N -0.75 -37.21 5.35 -343.44 -1.84 -39.05 16 21 C -0.24 -13.98 10.47 84.03 0.88 -13.10 16 22 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 23 C -0.06 -3.75 5.50 84.86 0.47 -3.28 16 24 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 25 Si 0.95 48.26 27.73 68.60 1.90 50.16 16 26 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 28 H -0.26 -12.62 6.52 99.48 0.65 -11.97 16 29 C 0.12 2.37 5.41 86.37 0.47 2.83 16 30 H 0.04 0.62 8.10 -2.38 -0.02 0.60 16 31 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.12 0.25 7.68 -2.38 -0.02 0.23 16 34 H 0.12 0.43 7.95 -2.39 -0.02 0.41 16 35 H 0.12 0.07 5.93 -2.39 -0.01 0.06 16 36 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.06 1.09 8.06 -2.38 -0.02 1.07 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.08 1.28 8.03 -2.39 -0.02 1.26 16 43 H 0.08 1.35 4.15 -2.39 -0.01 1.34 16 44 H 0.11 2.12 8.07 -2.39 -0.02 2.10 16 45 H 0.08 2.14 7.34 -2.39 -0.02 2.12 16 46 H 0.38 12.58 8.67 -74.06 -0.64 11.94 16 47 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 48 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.37 17.92 5.53 -92.71 -0.51 17.40 16 50 H 0.26 16.19 8.31 -92.71 -0.77 15.42 16 51 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 52 H 0.09 2.09 4.18 -2.38 -0.01 2.08 16 Total: -1.00 -83.66 405.76 0.37 -83.29 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.28 Total: 34.00 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 7.02 Total: 17.69 kcal Atomic # 7 Polarization: -124.05 SS G_CDS: -6.37 Total: -130.42 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -1.90 Total: -54.73 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.90 Total: 50.16 kcal Total: -83.66 0.37 -83.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.182 kcal (2) G-P(sol) polarization free energy of solvation -83.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds