Wall clock time and date at job start Wed Apr 1 2020 00:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47150 * 2 1 4 4 O 1.21283 * 119.99688 * 0.02562 * 3 2 1 5 5 N 1.34773 * 119.99957 * 179.97438 * 3 2 1 6 6 C 1.46930 * 120.63084 * 0.02562 * 5 3 2 7 7 C 1.53190 * 108.77781 * 233.58646 * 6 5 3 8 8 C 1.53042 * 109.31169 * 305.36696 * 7 6 5 9 9 C 1.53045 * 109.53854 * 61.36640 * 8 7 6 10 10 H 1.08995 * 109.52809 * 58.60162 * 9 8 7 11 11 C 1.50705 * 109.49572 * 178.68662 * 9 8 7 12 12 O 1.21279 * 120.00007 * 359.82931 * 11 9 8 13 13 N 1.34782 * 119.99756 * 179.84010 * 11 9 8 14 14 C 1.46501 * 119.99825 * 359.97438 * 13 11 9 15 15 C 1.46497 * 119.99674 * 179.97438 * 13 11 9 16 16 C 1.52997 * 109.47195 * 89.99829 * 15 13 11 17 17 H 1.09002 * 109.47153 * 304.99547 * 16 15 13 18 18 O 1.42898 * 109.47319 * 64.99855 * 16 15 13 19 19 C 1.53002 * 109.46817 * 184.99778 * 16 15 13 20 20 N 1.46507 * 109.46688 * 179.97438 * 19 16 15 21 21 C 1.36939 * 119.99805 * 179.97438 * 20 19 16 22 22 H 1.07998 * 119.99740 * 359.97438 * 21 20 19 23 23 C 1.38803 * 120.00124 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00263 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99931 * 0.02562 * 23 21 20 26 26 H 1.48497 * 109.47160 * 90.00382 * 25 23 21 27 27 H 1.48503 * 109.47144 * 210.00217 * 25 23 21 28 28 H 1.48498 * 109.46973 * 329.99831 * 25 23 21 29 29 C 1.46928 * 120.63041 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.47376 * 299.99695 * 1 2 3 31 31 H 1.09006 * 109.47249 * 59.99646 * 1 2 3 32 32 H 1.09001 * 109.47116 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47016 * 240.00656 * 2 1 3 34 34 H 1.08997 * 109.47136 * 120.00457 * 2 1 3 35 35 H 1.09000 * 109.58432 * 353.37735 * 6 5 3 36 36 H 1.09004 * 109.58305 * 113.65904 * 6 5 3 37 37 H 1.09001 * 109.49918 * 65.31714 * 7 6 5 38 38 H 1.08997 * 109.50200 * 185.41805 * 7 6 5 39 39 H 1.08999 * 109.46175 * 301.34486 * 8 7 6 40 40 H 1.09001 * 109.46304 * 181.38751 * 8 7 6 41 41 H 1.08997 * 109.46955 * 270.00131 * 14 13 11 42 42 H 1.08999 * 109.47005 * 30.00491 * 14 13 11 43 43 H 1.09004 * 109.46769 * 150.00346 * 14 13 11 44 44 H 1.09001 * 109.47117 * 329.99165 * 15 13 11 45 45 H 1.09004 * 109.46581 * 209.99818 * 15 13 11 46 46 H 0.96698 * 113.99898 * 59.99520 * 18 16 15 47 47 H 1.09002 * 109.47075 * 299.99262 * 19 16 15 48 48 H 1.08996 * 109.47407 * 60.00219 * 19 16 15 49 49 H 0.96997 * 119.99878 * 359.97438 * 20 19 16 50 50 H 0.97009 * 120.00251 * 179.97438 * 24 23 21 51 51 H 1.08995 * 109.58838 * 6.62999 * 29 5 3 52 52 H 1.08993 * 109.58712 * 246.20102 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 0.0005 6 6 4.3244 0.5609 0.0005 7 6 5.2968 0.7559 1.1681 8 6 5.9311 2.1453 1.0718 9 6 4.8399 3.2140 1.1683 10 1 4.3035 3.1029 2.1106 11 6 5.4688 4.5821 1.1057 12 8 6.6718 4.6922 0.9980 13 7 4.6944 5.6834 1.1698 14 6 3.2412 5.5504 1.2996 15 6 5.3058 7.0133 1.1095 16 6 5.3909 7.4699 -0.3482 17 1 5.9232 6.7200 -0.9334 18 8 4.0722 7.6360 -0.8732 19 6 6.1409 8.8015 -0.4226 20 7 6.2228 9.2384 -1.8186 21 6 6.8538 10.4125 -2.1325 22 1 7.2905 11.0166 -1.3510 23 6 6.9310 10.8268 -3.4550 24 7 7.5370 11.9556 -3.7568 25 14 6.1737 9.7830 -4.8065 26 1 4.7633 10.1961 -5.0194 27 1 6.9397 9.9706 -6.0649 28 1 6.2162 8.3527 -4.4098 29 6 3.8624 3.0469 0.0011 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.7968 -0.3856 0.1185 36 1 4.8755 0.5573 -0.9400 37 1 4.7562 0.6674 2.1105 38 1 6.0768 -0.0040 1.1228 39 1 6.4508 2.2420 0.1185 40 1 6.6419 2.2774 1.8875 41 1 2.7898 5.5129 0.3082 42 1 3.0072 4.6334 1.8404 43 1 2.8455 6.4060 1.8469 44 1 6.3078 6.9722 1.5366 45 1 4.6980 7.7186 1.6763 46 1 3.5400 8.2900 -0.3999 47 1 5.6085 9.5514 0.1625 48 1 7.1467 8.6749 -0.0222 49 1 5.8302 8.6960 -2.5203 50 1 7.5913 12.2449 -4.6811 51 1 3.0301 3.7406 0.1196 52 1 4.3774 3.2478 -0.9382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284417355.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:27 Heat of formation + Delta-G solvation = -106.194005 kcal Electronic energy + Delta-G solvation = -31272.292947 eV Core-core repulsion = 27079.299860 eV Total energy + Delta-G solvation = -4192.993087 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.07576 -39.91537 -37.94438 -37.23094 -35.43202 -34.13495 -33.73241 -32.87340 -31.95873 -31.35880 -29.66119 -27.09463 -26.36782 -26.10602 -24.47238 -23.48857 -22.53177 -21.37441 -21.24723 -19.39085 -19.16082 -17.72574 -17.65133 -17.20981 -16.67130 -16.45328 -16.11863 -15.89277 -15.24522 -15.19997 -14.75581 -14.61941 -14.41203 -14.25976 -13.80683 -13.73308 -13.58953 -13.36718 -13.23023 -13.08431 -12.86126 -12.64047 -12.51852 -12.38283 -12.18397 -12.13520 -11.91038 -11.61022 -11.59369 -11.37380 -11.31225 -11.19850 -10.99952 -10.83611 -10.78940 -10.25301 -10.18321 -9.98858 -9.75053 -9.54878 -9.08006 -8.88249 -8.60072 -7.20061 -5.73705 -3.08935 2.21799 2.35415 2.63172 2.83946 3.44156 3.50267 3.50448 4.01773 4.11676 4.35185 4.42950 4.47734 4.54693 4.61146 4.62851 4.64806 4.65824 4.76629 4.85399 4.94884 4.99425 5.02172 5.11554 5.19621 5.26164 5.29253 5.35684 5.39805 5.42305 5.50693 5.52044 5.53568 5.56031 5.65779 5.71240 5.76403 5.82055 5.88166 5.88825 5.93639 6.02325 6.34193 6.48681 6.65462 6.96028 7.19963 7.78549 7.89896 8.01623 8.03404 8.45274 9.25354 9.97790 10.18272 11.44473 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014358 B = 0.002532 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.703732 B =11056.708330 C =11670.853483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.537 6.537 5 N -0.613 5.613 6 C 0.103 3.897 7 C -0.134 4.134 8 C -0.102 4.102 9 C -0.118 4.118 10 H 0.099 0.901 11 C 0.518 3.482 12 O -0.532 6.532 13 N -0.606 5.606 14 C 0.077 3.923 15 C 0.086 3.914 16 C 0.083 3.917 17 H 0.099 0.901 18 O -0.554 6.554 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.887 3.113 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 C 0.108 3.892 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.082 0.918 46 H 0.370 0.630 47 H 0.029 0.971 48 H 0.035 0.965 49 H 0.366 0.634 50 H 0.259 0.741 51 H 0.111 0.889 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.232 -29.476 14.511 35.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.302 3.698 4 O -0.414 6.414 5 N -0.347 5.347 6 C -0.020 4.020 7 C -0.173 4.173 8 C -0.140 4.140 9 C -0.140 4.140 10 H 0.117 0.883 11 C 0.305 3.695 12 O -0.408 6.408 13 N -0.338 5.338 14 C -0.066 4.066 15 C -0.037 4.037 16 C 0.022 3.978 17 H 0.117 0.883 18 O -0.359 6.359 19 C 0.002 3.998 20 N -0.395 5.395 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.717 3.283 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 C -0.014 4.014 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.113 0.887 45 H 0.101 0.899 46 H 0.216 0.784 47 H 0.046 0.954 48 H 0.053 0.947 49 H 0.200 0.800 50 H 0.069 0.931 51 H 0.129 0.871 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.695 -29.160 14.059 34.420 hybrid contribution -0.506 -0.151 -0.613 0.809 sum -12.201 -29.311 13.447 34.479 Atomic orbital electron populations 1.21548 0.92871 1.01642 1.03509 1.21668 0.98720 0.93743 1.04167 1.20844 0.81417 0.92071 0.75514 1.90712 1.54647 1.46567 1.49447 1.48147 1.05758 1.07018 1.73773 1.21849 0.91178 0.89563 0.99429 1.21946 0.98899 0.97855 0.98554 1.21358 0.96426 0.91975 1.04197 1.21662 0.98190 0.93127 1.01061 0.88335 1.20406 0.87022 0.85787 0.76333 1.90732 1.14362 1.86814 1.48881 1.47752 1.07536 1.06003 1.72536 1.22007 0.79624 1.02518 1.02474 1.22250 1.00564 0.82813 0.98063 1.22592 0.84019 0.98134 0.93038 0.88314 1.86582 1.25102 1.63869 1.60333 1.21192 0.97808 0.92406 0.88353 1.42576 1.69276 1.25644 1.02035 1.19049 1.28346 0.96401 0.93689 0.89307 1.24661 1.00469 0.97095 0.96905 1.69709 1.48106 1.22330 1.18102 0.86498 0.79057 0.80372 0.82330 1.21022 1.21818 1.20293 1.21834 0.98299 0.83869 0.97423 0.91929 0.91868 0.92045 0.88900 0.88914 0.89392 0.90846 0.91333 0.89952 0.90672 0.90528 0.91185 0.91285 0.90921 0.88682 0.89921 0.78355 0.95365 0.94692 0.80050 0.93076 0.87140 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -0.76 4.77 -27.88 -0.13 -0.89 16 3 C 0.51 4.63 7.70 -10.99 -0.08 4.55 16 4 O -0.54 -6.91 15.40 5.55 0.09 -6.82 16 5 N -0.61 -4.89 2.97 -172.79 -0.51 -5.41 16 6 C 0.10 0.52 6.34 -3.71 -0.02 0.49 16 7 C -0.13 -0.68 6.08 -26.61 -0.16 -0.85 16 8 C -0.10 -0.84 4.46 -26.69 -0.12 -0.95 16 9 C -0.12 -1.09 1.87 -91.66 -0.17 -1.26 16 10 H 0.10 0.80 7.41 -51.93 -0.38 0.41 16 11 C 0.52 6.50 7.08 -10.98 -0.08 6.42 16 12 O -0.53 -8.63 15.56 5.56 0.09 -8.54 16 13 N -0.61 -6.95 2.84 -181.57 -0.52 -7.47 16 14 C 0.08 0.69 8.44 59.85 0.51 1.19 16 15 C 0.09 1.08 5.11 -4.04 -0.02 1.06 16 16 C 0.08 1.32 3.30 -26.73 -0.09 1.23 16 17 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 18 O -0.55 -8.66 12.64 -35.23 -0.45 -9.11 16 19 C 0.13 2.55 5.92 -4.04 -0.02 2.53 16 20 N -0.75 -18.69 5.30 -59.91 -0.32 -19.01 16 21 C -0.25 -7.20 10.47 -15.06 -0.16 -7.35 16 22 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 0.14 5.50 -17.44 -0.10 0.04 16 24 N -0.93 -30.13 13.97 55.49 0.78 -29.35 16 25 Si 0.89 23.32 27.74 -169.99 -4.71 18.61 16 26 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.28 -7.04 6.52 56.52 0.37 -6.67 16 29 C 0.11 1.05 5.28 -3.73 -0.02 1.03 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.35 7.94 -51.93 -0.41 -0.07 16 34 H 0.09 0.31 7.69 -51.93 -0.40 -0.09 16 35 H 0.09 0.24 5.93 -51.93 -0.31 -0.07 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 41 H 0.07 0.71 7.08 -51.93 -0.37 0.34 16 42 H 0.07 0.54 5.95 -51.93 -0.31 0.23 16 43 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 44 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 45 H 0.08 0.83 7.89 -51.93 -0.41 0.42 16 46 H 0.37 4.54 9.05 45.56 0.41 4.96 16 47 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.37 9.23 5.41 -40.82 -0.22 9.01 16 50 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 51 H 0.11 1.18 3.58 -51.93 -0.19 0.99 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 405.79 15.07 6.12 6.12 Total: -1.00 -37.89 405.79 -7.81 -45.70 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.04 Total: 8.55 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -0.33 Total: 6.75 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.57 Total: -61.24 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.27 Total: -24.48 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.71 Total: 18.61 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.89 -7.81 -45.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417355.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.498 kcal (2) G-P(sol) polarization free energy of solvation -37.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds