Wall clock time and date at job start Wed Apr 1 2020 00:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47210 * 2 1 4 4 O 1.21279 * 120.00405 * 0.02562 * 3 2 1 5 5 N 1.34782 * 119.99862 * 179.97438 * 3 2 1 6 6 C 1.46926 * 120.62895 * 0.02562 * 5 3 2 7 7 C 1.53195 * 108.77376 * 126.36835 * 6 5 3 8 8 C 1.53045 * 109.31163 * 54.63621 * 7 6 5 9 9 C 1.53041 * 109.53593 * 298.63128 * 8 7 6 10 10 H 1.09002 * 109.52126 * 301.40072 * 9 8 7 11 11 C 1.50701 * 109.49714 * 181.32006 * 9 8 7 12 12 O 1.21279 * 119.99646 * 345.98043 * 11 9 8 13 13 N 1.34768 * 119.99866 * 165.98005 * 11 9 8 14 14 C 1.46498 * 120.00214 * 4.27867 * 13 11 9 15 15 C 1.46507 * 119.99925 * 184.55473 * 13 11 9 16 16 C 1.53006 * 109.46832 * 269.72393 * 15 13 11 17 17 H 1.08995 * 109.46885 * 59.99968 * 16 15 13 18 18 O 1.42904 * 109.47076 * 299.99816 * 16 15 13 19 19 C 1.52997 * 109.46916 * 180.02562 * 16 15 13 20 20 N 1.46502 * 109.47310 * 185.00212 * 19 16 15 21 21 C 1.36935 * 119.99926 * 179.97438 * 20 19 16 22 22 H 1.07998 * 120.00262 * 359.97438 * 21 20 19 23 23 C 1.38813 * 119.99648 * 180.02562 * 21 20 19 24 24 N 1.31621 * 120.00020 * 180.02562 * 23 21 20 25 25 Si 1.86808 * 119.99986 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.46990 * 90.00244 * 25 23 21 27 27 H 1.48503 * 109.46979 * 210.00007 * 25 23 21 28 28 H 1.48492 * 109.47058 * 329.99936 * 25 23 21 29 29 C 1.46929 * 120.63067 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.46957 * 300.00416 * 1 2 3 31 31 H 1.09005 * 109.46832 * 59.99640 * 1 2 3 32 32 H 1.08997 * 109.47528 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46774 * 239.99865 * 2 1 3 34 34 H 1.08996 * 109.46952 * 120.00635 * 2 1 3 35 35 H 1.09000 * 109.58474 * 246.15126 * 6 5 3 36 36 H 1.08998 * 109.58702 * 6.43790 * 6 5 3 37 37 H 1.09001 * 109.49604 * 174.58540 * 7 6 5 38 38 H 1.09001 * 109.50068 * 294.68357 * 7 6 5 39 39 H 1.08999 * 109.45741 * 178.61513 * 8 7 6 40 40 H 1.09000 * 109.46093 * 58.65444 * 8 7 6 41 41 H 1.09003 * 109.47132 * 264.79822 * 14 13 11 42 42 H 1.08995 * 109.47213 * 24.80165 * 14 13 11 43 43 H 1.09004 * 109.47505 * 144.80564 * 14 13 11 44 44 H 1.08998 * 109.46846 * 29.72463 * 15 13 11 45 45 H 1.09002 * 109.47278 * 149.72326 * 15 13 11 46 46 H 0.96698 * 113.99903 * 299.99858 * 18 16 15 47 47 H 1.09008 * 109.47064 * 305.00102 * 19 16 15 48 48 H 1.09000 * 109.47664 * 64.99711 * 19 16 15 49 49 H 0.97002 * 119.99846 * 359.97438 * 20 19 16 50 50 H 0.97003 * 119.99511 * 179.97438 * 24 23 21 51 51 H 1.08994 * 109.58160 * 113.84172 * 29 5 3 52 52 H 1.08998 * 109.58268 * 353.42220 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6670 0.0005 6 6 4.3244 0.5608 0.0005 7 6 5.2969 0.7559 -1.1670 8 6 5.9313 2.1453 -1.0705 9 6 4.8401 3.2140 -1.1669 10 1 4.3038 3.1029 -2.1094 11 6 5.4691 4.5821 -1.1043 12 8 6.6202 4.7043 -0.7426 13 7 4.7523 5.6697 -1.4503 14 6 3.3355 5.5334 -1.7970 15 6 5.3916 6.9874 -1.4856 16 6 5.2558 7.6569 -0.1165 17 1 5.7393 7.0386 0.6398 18 8 3.8715 7.8074 0.2050 19 6 5.9228 9.0333 -0.1535 20 7 5.8984 9.6241 1.1869 21 6 6.4428 10.8624 1.3994 22 1 6.8905 11.4035 0.5790 23 6 6.4200 11.4219 2.6696 24 7 6.9429 12.6125 2.8738 25 14 5.6461 10.4857 4.0889 26 1 6.6775 9.6450 4.7481 27 1 5.0900 11.4492 5.0726 28 1 4.5558 9.6190 3.5741 29 6 3.8625 3.0468 0.0000 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.8772 0.5587 0.9400 36 1 3.7966 -0.3859 -0.1151 37 1 6.0769 -0.0042 -1.1217 38 1 4.7563 0.6675 -2.1094 39 1 6.6421 2.2774 -1.8862 40 1 6.4509 2.2418 -0.1171 41 1 3.2328 5.4467 -2.8787 42 1 2.9291 4.6411 -1.3208 43 1 2.7903 6.4110 -1.4495 44 1 6.4474 6.8726 -1.7308 45 1 4.9080 7.6057 -2.2419 46 1 3.3775 8.3475 -0.4269 47 1 6.9558 8.9277 -0.4852 48 1 5.3834 9.6801 -0.8455 49 1 5.4965 9.1380 1.9239 50 1 6.9266 13.0035 3.7613 51 1 4.3774 3.2477 0.9394 52 1 3.0302 3.7404 -0.1185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284417359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:31 Heat of formation + Delta-G solvation = -105.034273 kcal Electronic energy + Delta-G solvation = -31189.993971 eV Core-core repulsion = 26997.051173 eV Total energy + Delta-G solvation = -4192.942797 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.07492 -39.92410 -37.97414 -37.22889 -35.35866 -34.15072 -33.74575 -32.89781 -31.96100 -31.37938 -29.69443 -27.02921 -26.42183 -26.09625 -24.48673 -23.52698 -22.52795 -21.36994 -21.25160 -19.37654 -19.17332 -17.73308 -17.66972 -17.26191 -16.62977 -16.45599 -16.14098 -15.90260 -15.26937 -15.21493 -14.79524 -14.61227 -14.41700 -14.29887 -13.85082 -13.72746 -13.60096 -13.35755 -13.25543 -13.05777 -12.88983 -12.60374 -12.49937 -12.34973 -12.18918 -12.13942 -11.92903 -11.61305 -11.59922 -11.40734 -11.29608 -11.21614 -11.01258 -10.84428 -10.79559 -10.26449 -10.17324 -9.98748 -9.73863 -9.54678 -9.09489 -8.87908 -8.58198 -7.19988 -5.73523 -3.08771 2.19679 2.33460 2.62650 2.85481 3.44593 3.50955 3.51724 3.99898 4.11202 4.34014 4.41370 4.45186 4.55295 4.59953 4.60632 4.64858 4.65197 4.77459 4.88474 4.91545 4.94921 5.01383 5.10415 5.19692 5.26306 5.30259 5.34671 5.38301 5.39738 5.47946 5.51290 5.53219 5.57206 5.65241 5.72151 5.78047 5.81670 5.86313 5.91046 5.92679 6.00399 6.35265 6.48144 6.65179 6.94146 7.21318 7.77041 7.89203 8.02438 8.02906 8.45441 9.25248 9.97819 10.18084 11.44626 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014615 B = 0.002489 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.418132 B =11246.768703 C =11899.660615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.537 6.537 5 N -0.613 5.613 6 C 0.103 3.897 7 C -0.134 4.134 8 C -0.102 4.102 9 C -0.119 4.119 10 H 0.096 0.904 11 C 0.518 3.482 12 O -0.532 6.532 13 N -0.604 5.604 14 C 0.068 3.932 15 C 0.087 3.913 16 C 0.082 3.918 17 H 0.101 0.899 18 O -0.553 6.553 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.245 4.245 22 H 0.089 0.911 23 C 0.005 3.995 24 N -0.934 5.934 25 Si 0.883 3.117 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.273 1.273 29 C 0.114 3.886 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.368 0.632 47 H 0.035 0.965 48 H 0.028 0.972 49 H 0.366 0.634 50 H 0.259 0.741 51 H 0.076 0.924 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.081 -31.785 -12.933 35.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.413 6.413 5 N -0.347 5.347 6 C -0.020 4.020 7 C -0.173 4.173 8 C -0.140 4.140 9 C -0.141 4.141 10 H 0.114 0.886 11 C 0.304 3.696 12 O -0.408 6.408 13 N -0.337 5.337 14 C -0.075 4.075 15 C -0.037 4.037 16 C 0.022 3.978 17 H 0.119 0.881 18 O -0.358 6.358 19 C 0.003 3.997 20 N -0.395 5.395 21 C -0.375 4.375 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.582 5.582 25 Si 0.713 3.287 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.199 1.199 29 C -0.008 4.008 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.071 0.929 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.100 0.900 46 H 0.215 0.785 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.199 0.801 50 H 0.069 0.931 51 H 0.094 0.906 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.622 -31.375 -12.275 35.037 hybrid contribution -0.500 -0.099 0.518 0.727 sum -10.122 -31.474 -11.757 35.089 Atomic orbital electron populations 1.21550 0.92856 1.01657 1.03530 1.21666 0.98734 0.93684 1.04181 1.20860 0.81401 0.92102 0.75503 1.90720 1.54659 1.46558 1.49373 1.48149 1.05788 1.06958 1.73847 1.21846 0.91139 0.89530 0.99444 1.21946 0.98906 0.97821 0.98585 1.21365 0.96394 0.92025 1.04214 1.21673 0.98197 0.93158 1.01067 0.88562 1.20406 0.86332 0.85748 0.77083 1.90731 1.17688 1.86433 1.45914 1.47718 1.11033 1.07159 1.67752 1.22113 0.80888 1.04394 1.00107 1.22202 1.00147 0.82967 0.98347 1.22606 0.82542 0.96696 0.96003 0.88127 1.86614 1.20607 1.74230 1.54330 1.21202 0.98182 0.91099 0.89221 1.42587 1.71946 1.19922 1.05066 1.19047 1.30452 0.92206 0.95808 0.89301 1.24662 1.00696 0.96522 0.97213 1.69710 1.50458 1.16159 1.21910 0.86545 0.79613 0.79362 0.83156 1.21107 1.21743 1.19859 1.21693 0.97856 0.83755 0.97505 0.91869 0.91911 0.92023 0.88888 0.88883 0.90825 0.89342 0.89942 0.91324 0.90813 0.90384 0.92851 0.90134 0.90078 0.88766 0.89951 0.78525 0.94680 0.95396 0.80120 0.93076 0.90618 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -0.75 4.77 -27.88 -0.13 -0.88 16 3 C 0.51 4.63 7.70 -10.98 -0.08 4.55 16 4 O -0.54 -7.00 15.39 5.56 0.09 -6.91 16 5 N -0.61 -4.85 2.97 -172.80 -0.51 -5.37 16 6 C 0.10 0.50 6.34 -3.71 -0.02 0.48 16 7 C -0.13 -0.65 6.08 -26.61 -0.16 -0.82 16 8 C -0.10 -0.81 4.54 -26.69 -0.12 -0.93 16 9 C -0.12 -1.09 1.84 -91.68 -0.17 -1.26 16 10 H 0.10 0.77 7.65 -51.93 -0.40 0.38 16 11 C 0.52 6.52 6.91 -10.99 -0.08 6.44 16 12 O -0.53 -8.65 15.64 5.56 0.09 -8.56 16 13 N -0.60 -6.99 2.80 -181.57 -0.51 -7.50 16 14 C 0.07 0.61 9.80 59.85 0.59 1.19 16 15 C 0.09 1.09 5.10 -4.04 -0.02 1.07 16 16 C 0.08 1.32 3.27 -26.73 -0.09 1.23 16 17 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 18 O -0.55 -8.74 11.92 -35.23 -0.42 -9.16 16 19 C 0.13 2.56 5.90 -4.04 -0.02 2.54 16 20 N -0.75 -18.75 5.35 -59.91 -0.32 -19.07 16 21 C -0.25 -7.22 10.47 -15.06 -0.16 -7.37 16 22 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 0.15 5.50 -17.43 -0.10 0.05 16 24 N -0.93 -30.18 13.97 55.49 0.78 -29.40 16 25 Si 0.88 23.30 27.74 -169.99 -4.71 18.58 16 26 H -0.28 -7.47 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 28 H -0.27 -6.96 6.52 56.52 0.37 -6.59 16 29 C 0.11 1.12 5.40 -3.73 -0.02 1.10 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.30 7.70 -51.93 -0.40 -0.10 16 34 H 0.09 0.34 7.94 -51.93 -0.41 -0.08 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.22 5.93 -51.93 -0.31 -0.09 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.73 7.99 -51.93 -0.42 0.32 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.74 3.98 -51.93 -0.21 0.53 16 43 H 0.08 0.73 6.80 -51.93 -0.35 0.37 16 44 H 0.09 1.28 7.48 -51.93 -0.39 0.89 16 45 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 46 H 0.37 4.52 8.81 45.56 0.40 4.92 16 47 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.37 9.26 5.53 -40.82 -0.23 9.03 16 50 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 51 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 52 H 0.11 1.19 4.36 -51.93 -0.23 0.97 16 LS Contribution 405.56 15.07 6.11 6.11 Total: -1.00 -38.13 405.56 -7.67 -45.81 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -8.01 Total: 8.57 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.25 Total: 6.90 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.57 Total: -61.34 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.25 Total: -24.63 kcal Atomic # 14 Polarization: 23.30 SS G_CDS: -4.71 Total: 18.58 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.13 -7.67 -45.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.227 kcal (2) G-P(sol) polarization free energy of solvation -38.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds