Wall clock time and date at job start Wed Apr 1 2020 00:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47105 * 2 1 4 4 O 1.21284 * 120.00087 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99728 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63425 * 0.02562 * 5 3 2 7 7 C 1.53192 * 108.77318 * 126.36858 * 6 5 3 8 8 C 1.53041 * 109.31320 * 54.63839 * 7 6 5 9 9 C 1.53033 * 109.53898 * 298.63305 * 8 7 6 10 10 H 1.09000 * 109.49457 * 301.41562 * 9 8 7 11 11 C 1.50701 * 109.50179 * 181.31603 * 9 8 7 12 12 O 1.21288 * 119.99349 * 0.16031 * 11 9 8 13 13 N 1.34772 * 120.00261 * 180.15897 * 11 9 8 14 14 C 1.46494 * 120.00057 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99965 * 180.02562 * 13 11 9 16 16 C 1.52993 * 109.47153 * 89.99921 * 15 13 11 17 17 H 1.09001 * 109.47341 * 305.00150 * 16 15 13 18 18 O 1.42900 * 109.47083 * 65.00239 * 16 15 13 19 19 C 1.52998 * 109.47128 * 185.00058 * 16 15 13 20 20 N 1.46502 * 109.47321 * 180.02562 * 19 16 15 21 21 C 1.36937 * 120.00211 * 180.02562 * 20 19 16 22 22 H 1.07997 * 119.99873 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99737 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00321 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99682 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47224 * 90.00047 * 25 23 21 27 27 H 1.48505 * 109.47040 * 210.00071 * 25 23 21 28 28 H 1.48498 * 109.47194 * 329.99883 * 25 23 21 29 29 C 1.46926 * 120.62994 * 180.02562 * 5 3 2 30 30 H 1.09008 * 109.46978 * 299.99812 * 1 2 3 31 31 H 1.08996 * 109.47126 * 59.99570 * 1 2 3 32 32 H 1.09003 * 109.47453 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46842 * 240.00071 * 2 1 3 34 34 H 1.08999 * 109.46746 * 120.00101 * 2 1 3 35 35 H 1.08997 * 109.58859 * 246.15938 * 6 5 3 36 36 H 1.09001 * 109.58530 * 6.44176 * 6 5 3 37 37 H 1.09005 * 109.49451 * 174.58740 * 7 6 5 38 38 H 1.09002 * 109.49733 * 294.68295 * 7 6 5 39 39 H 1.08999 * 109.45610 * 58.65103 * 8 7 6 40 40 H 1.09004 * 109.46035 * 178.62071 * 8 7 6 41 41 H 1.09005 * 109.47161 * 89.99823 * 14 13 11 42 42 H 1.08999 * 109.47257 * 209.99887 * 14 13 11 43 43 H 1.08999 * 109.47405 * 329.99984 * 14 13 11 44 44 H 1.08999 * 109.46945 * 210.00577 * 15 13 11 45 45 H 1.09004 * 109.47230 * 330.00274 * 15 13 11 46 46 H 0.96701 * 113.99976 * 59.99602 * 18 16 15 47 47 H 1.09001 * 109.47085 * 300.00249 * 19 16 15 48 48 H 1.08991 * 109.47199 * 60.00111 * 19 16 15 49 49 H 0.96997 * 119.99709 * 359.97438 * 20 19 16 50 50 H 0.96999 * 120.00205 * 180.02562 * 24 23 21 51 51 H 1.09006 * 109.58406 * 353.41879 * 29 5 3 52 52 H 1.09002 * 109.59019 * 113.83868 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3244 0.5609 -0.0017 7 6 5.2958 0.7565 -1.1699 8 6 5.9303 2.1458 -1.0735 9 6 4.8391 3.2145 -1.1687 10 1 4.3020 3.1032 -2.1106 11 6 5.4679 4.5826 -1.1061 12 8 6.6711 4.6926 -0.9991 13 7 4.6935 5.6838 -1.1690 14 6 3.2403 5.5509 -1.2977 15 6 5.3050 7.0138 -1.1087 16 6 5.6444 7.4836 -2.5246 17 1 6.2718 6.7386 -3.0141 18 8 4.4383 7.6556 -3.2714 19 6 6.3947 8.8151 -2.4539 20 7 6.7193 9.2654 -3.8097 21 6 7.3954 10.4414 -3.9972 22 1 7.6890 11.0371 -3.1455 23 6 7.7034 10.8677 -5.2818 24 7 7.3451 10.1419 -6.3197 25 14 8.6263 12.4715 -5.5375 26 1 10.0874 12.2064 -5.5427 27 1 8.2273 13.0705 -6.8365 28 1 8.2978 13.4126 -4.4368 29 6 3.8624 3.0468 0.0000 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.8779 0.5584 0.9373 36 1 3.7966 -0.3858 -0.1172 37 1 6.0759 -0.0036 -1.1255 38 1 4.7545 0.6683 -2.1119 39 1 6.4506 2.2420 -0.1206 40 1 6.6403 2.2783 -1.8899 41 1 2.7896 5.5130 -0.3059 42 1 2.8442 6.4067 -1.8443 43 1 3.0057 4.6341 -1.8386 44 1 4.6065 7.7143 -0.6510 45 1 6.2165 6.9679 -0.5128 46 1 3.8307 8.3058 -2.8930 47 1 5.7674 9.5601 -1.9644 48 1 7.3147 8.6840 -1.8843 49 1 6.4559 8.7301 -4.5745 50 1 7.5606 10.4396 -7.2174 51 1 3.0299 3.7406 -0.1168 52 1 4.3783 3.2468 0.9392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284417362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:35 Heat of formation + Delta-G solvation = -110.141751 kcal Electronic energy + Delta-G solvation = -30916.224425 eV Core-core repulsion = 26723.060151 eV Total energy + Delta-G solvation = -4193.164274 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.04588 -39.87614 -37.87193 -37.15235 -35.31949 -33.98134 -33.71622 -32.86237 -31.91717 -31.18193 -29.33521 -26.96346 -26.33535 -25.92237 -24.43421 -23.50144 -22.76563 -21.43930 -21.08768 -19.39251 -19.12188 -17.67524 -17.16391 -17.12063 -16.54372 -16.52280 -16.08351 -15.73725 -15.35288 -15.08105 -14.80190 -14.45548 -14.37067 -14.24238 -13.78058 -13.75336 -13.53459 -13.33046 -13.10315 -12.94886 -12.84551 -12.59298 -12.49500 -12.28663 -12.17083 -12.03405 -11.85756 -11.59958 -11.48705 -11.34369 -11.26448 -10.95685 -10.90811 -10.79666 -10.64702 -10.24049 -10.15075 -9.94662 -9.73697 -9.60177 -9.08273 -8.86156 -8.49659 -6.88190 -5.71287 -3.00628 2.21541 2.40635 2.62934 2.92988 3.46322 3.50726 3.52860 4.01745 4.16660 4.38538 4.47044 4.50122 4.58328 4.59622 4.61535 4.65985 4.77725 4.81230 4.91297 5.03517 5.06287 5.07074 5.20731 5.23688 5.27252 5.35314 5.37090 5.37281 5.46589 5.51558 5.53496 5.59312 5.69259 5.71180 5.81260 5.82609 5.83524 5.97446 5.99879 6.04209 6.26837 6.45442 6.57765 6.78306 6.94553 7.28572 7.72035 7.76943 8.05025 8.10100 8.46913 9.58199 10.16568 10.52486 11.51141 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.002041 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.350344 B =13715.080241 C =14221.830812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.513 3.487 4 O -0.538 6.538 5 N -0.613 5.613 6 C 0.104 3.896 7 C -0.136 4.136 8 C -0.101 4.101 9 C -0.120 4.120 10 H 0.101 0.899 11 C 0.518 3.482 12 O -0.533 6.533 13 N -0.605 5.605 14 C 0.077 3.923 15 C 0.086 3.914 16 C 0.087 3.913 17 H 0.099 0.901 18 O -0.551 6.551 19 C 0.127 3.873 20 N -0.725 5.725 21 C -0.242 4.242 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.110 3.890 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.367 0.633 47 H 0.019 0.981 48 H 0.027 0.973 49 H 0.389 0.611 50 H 0.255 0.745 51 H 0.109 0.891 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.504 -25.322 16.576 32.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.302 3.698 4 O -0.415 6.415 5 N -0.347 5.347 6 C -0.019 4.019 7 C -0.174 4.174 8 C -0.139 4.139 9 C -0.142 4.142 10 H 0.119 0.881 11 C 0.305 3.695 12 O -0.409 6.409 13 N -0.337 5.337 14 C -0.066 4.066 15 C -0.038 4.038 16 C 0.027 3.973 17 H 0.117 0.883 18 O -0.355 6.355 19 C -0.002 4.002 20 N -0.370 5.370 21 C -0.373 4.373 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.013 4.013 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.100 0.900 43 H 0.090 0.910 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.213 0.787 47 H 0.037 0.963 48 H 0.045 0.955 49 H 0.223 0.777 50 H 0.065 0.935 51 H 0.127 0.873 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.947 -25.062 16.292 32.191 hybrid contribution 0.347 1.166 -0.164 1.227 sum -11.600 -23.896 16.128 31.075 Atomic orbital electron populations 1.21548 0.92870 1.01658 1.03488 1.21668 0.98720 0.93726 1.04194 1.20847 0.81408 0.92084 0.75450 1.90706 1.54673 1.46576 1.49533 1.48150 1.05767 1.07032 1.73748 1.21844 0.91143 0.89541 0.99370 1.21958 0.98910 0.97898 0.98627 1.21346 0.96495 0.91925 1.04122 1.21684 0.98175 0.93192 1.01153 0.88073 1.20388 0.87028 0.85777 0.76323 1.90730 1.14267 1.86824 1.49066 1.47746 1.07510 1.05994 1.72459 1.21993 0.79534 1.03812 1.01277 1.22245 0.99911 0.82814 0.98784 1.22534 0.86354 0.98058 0.90401 0.88280 1.86620 1.30544 1.63983 1.54327 1.21216 0.96608 0.92315 0.90098 1.42238 1.68207 1.25282 1.01260 1.19227 1.28197 0.97764 0.92114 0.91266 1.24768 1.01730 0.99013 0.95515 1.69685 1.51622 1.38897 0.97635 0.86176 0.79602 0.83229 0.77079 1.21721 1.21761 1.20797 1.21837 0.98223 0.83960 0.97255 0.91957 0.91856 0.92040 0.88831 0.88943 0.90958 0.89389 0.89946 0.91198 0.90844 0.90356 0.92436 0.90033 0.91025 0.90080 0.88827 0.78693 0.96284 0.95542 0.77682 0.93526 0.87296 0.91087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.20 37.16 0.34 -0.45 16 2 C -0.14 -0.72 4.77 -27.88 -0.13 -0.85 16 3 C 0.51 4.41 7.70 -10.99 -0.08 4.32 16 4 O -0.54 -6.61 15.39 5.55 0.09 -6.53 16 5 N -0.61 -4.58 2.97 -172.74 -0.51 -5.10 16 6 C 0.10 0.49 6.34 -3.71 -0.02 0.47 16 7 C -0.14 -0.75 6.08 -26.61 -0.16 -0.91 16 8 C -0.10 -0.88 4.46 -26.69 -0.12 -1.00 16 9 C -0.12 -1.18 1.87 -91.64 -0.17 -1.35 16 10 H 0.10 0.99 7.41 -51.93 -0.38 0.61 16 11 C 0.52 6.88 7.08 -10.99 -0.08 6.80 16 12 O -0.53 -9.02 15.56 5.55 0.09 -8.93 16 13 N -0.60 -7.43 2.84 -181.58 -0.52 -7.94 16 14 C 0.08 0.75 8.61 59.84 0.52 1.26 16 15 C 0.09 1.15 5.06 -4.04 -0.02 1.13 16 16 C 0.09 1.49 3.30 -26.74 -0.09 1.41 16 17 H 0.10 1.99 8.14 -51.93 -0.42 1.57 16 18 O -0.55 -9.36 11.91 -35.23 -0.42 -9.78 16 19 C 0.13 2.60 5.92 -4.04 -0.02 2.58 16 20 N -0.73 -19.29 5.49 -59.91 -0.33 -19.62 16 21 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -29.24 13.06 55.49 0.72 -28.52 16 25 Si 0.91 23.02 29.55 -169.99 -5.02 17.99 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 29 C 0.11 0.97 5.28 -3.69 -0.02 0.95 16 30 H 0.06 0.43 8.10 -51.92 -0.42 0.01 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.02 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.09 0.32 7.69 -51.93 -0.40 -0.08 16 34 H 0.09 0.29 7.94 -51.93 -0.41 -0.12 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.09 0.22 5.93 -51.93 -0.31 -0.09 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.68 8.13 -51.93 -0.42 0.25 16 40 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.06 0.49 7.07 -51.93 -0.37 0.12 16 42 H 0.08 0.78 7.11 -51.93 -0.37 0.41 16 43 H 0.07 0.68 5.95 -51.93 -0.31 0.37 16 44 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 45 H 0.09 1.35 7.42 -51.93 -0.39 0.96 16 46 H 0.37 4.98 9.04 45.56 0.41 5.39 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.39 11.16 7.54 -40.82 -0.31 10.85 16 50 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 51 H 0.11 1.05 3.58 -51.93 -0.19 0.87 16 52 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 407.69 15.07 6.14 6.14 Total: -1.00 -37.13 407.69 -8.12 -45.25 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -8.05 Total: 10.37 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.31 Total: 6.66 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: -0.63 Total: -61.18 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.25 Total: -25.24 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.13 -8.12 -45.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.889 kcal (2) G-P(sol) polarization free energy of solvation -37.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds