Wall clock time and date at job start Wed Apr 1 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47105 * 2 1 4 4 O 1.21284 * 120.00087 * 0.02562 * 3 2 1 5 5 N 1.34772 * 119.99728 * 180.02562 * 3 2 1 6 6 C 1.46927 * 120.63425 * 0.02562 * 5 3 2 7 7 C 1.53192 * 108.77318 * 126.36858 * 6 5 3 8 8 C 1.53041 * 109.31320 * 54.63839 * 7 6 5 9 9 C 1.53033 * 109.53898 * 298.63305 * 8 7 6 10 10 H 1.09000 * 109.49457 * 301.41562 * 9 8 7 11 11 C 1.50701 * 109.50179 * 181.31603 * 9 8 7 12 12 O 1.21288 * 119.99349 * 0.16031 * 11 9 8 13 13 N 1.34772 * 120.00261 * 180.15897 * 11 9 8 14 14 C 1.46494 * 120.00057 * 0.02562 * 13 11 9 15 15 C 1.46503 * 119.99965 * 180.02562 * 13 11 9 16 16 C 1.52993 * 109.47153 * 89.99921 * 15 13 11 17 17 H 1.09001 * 109.47341 * 305.00150 * 16 15 13 18 18 O 1.42900 * 109.47083 * 65.00239 * 16 15 13 19 19 C 1.52998 * 109.47128 * 185.00058 * 16 15 13 20 20 N 1.46502 * 109.47321 * 180.02562 * 19 16 15 21 21 C 1.36937 * 120.00211 * 180.02562 * 20 19 16 22 22 H 1.07997 * 119.99873 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99737 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00321 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 119.99682 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47224 * 90.00047 * 25 23 21 27 27 H 1.48505 * 109.47040 * 210.00071 * 25 23 21 28 28 H 1.48498 * 109.47194 * 329.99883 * 25 23 21 29 29 C 1.46926 * 120.62994 * 180.02562 * 5 3 2 30 30 H 1.09008 * 109.46978 * 299.99812 * 1 2 3 31 31 H 1.08996 * 109.47126 * 59.99570 * 1 2 3 32 32 H 1.09003 * 109.47453 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46842 * 240.00071 * 2 1 3 34 34 H 1.08999 * 109.46746 * 120.00101 * 2 1 3 35 35 H 1.08997 * 109.58859 * 246.15938 * 6 5 3 36 36 H 1.09001 * 109.58530 * 6.44176 * 6 5 3 37 37 H 1.09005 * 109.49451 * 174.58740 * 7 6 5 38 38 H 1.09002 * 109.49733 * 294.68295 * 7 6 5 39 39 H 1.08999 * 109.45610 * 58.65103 * 8 7 6 40 40 H 1.09004 * 109.46035 * 178.62071 * 8 7 6 41 41 H 1.09005 * 109.47161 * 89.99823 * 14 13 11 42 42 H 1.08999 * 109.47257 * 209.99887 * 14 13 11 43 43 H 1.08999 * 109.47405 * 329.99984 * 14 13 11 44 44 H 1.08999 * 109.46945 * 210.00577 * 15 13 11 45 45 H 1.09004 * 109.47230 * 330.00274 * 15 13 11 46 46 H 0.96701 * 113.99976 * 59.99602 * 18 16 15 47 47 H 1.09001 * 109.47085 * 300.00249 * 19 16 15 48 48 H 1.08991 * 109.47199 * 60.00111 * 19 16 15 49 49 H 0.96997 * 119.99709 * 359.97438 * 20 19 16 50 50 H 0.96999 * 120.00205 * 180.02562 * 24 23 21 51 51 H 1.09006 * 109.58406 * 353.41879 * 29 5 3 52 52 H 1.09002 * 109.59019 * 113.83868 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6670 -0.0005 6 6 4.3244 0.5609 -0.0017 7 6 5.2958 0.7565 -1.1699 8 6 5.9303 2.1458 -1.0735 9 6 4.8391 3.2145 -1.1687 10 1 4.3020 3.1032 -2.1106 11 6 5.4679 4.5826 -1.1061 12 8 6.6711 4.6926 -0.9991 13 7 4.6935 5.6838 -1.1690 14 6 3.2403 5.5509 -1.2977 15 6 5.3050 7.0138 -1.1087 16 6 5.6444 7.4836 -2.5246 17 1 6.2718 6.7386 -3.0141 18 8 4.4383 7.6556 -3.2714 19 6 6.3947 8.8151 -2.4539 20 7 6.7193 9.2654 -3.8097 21 6 7.3954 10.4414 -3.9972 22 1 7.6890 11.0371 -3.1455 23 6 7.7034 10.8677 -5.2818 24 7 7.3451 10.1419 -6.3197 25 14 8.6263 12.4715 -5.5375 26 1 10.0874 12.2064 -5.5427 27 1 8.2273 13.0705 -6.8365 28 1 8.2978 13.4126 -4.4368 29 6 3.8624 3.0468 0.0000 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.8779 0.5584 0.9373 36 1 3.7966 -0.3858 -0.1172 37 1 6.0759 -0.0036 -1.1255 38 1 4.7545 0.6683 -2.1119 39 1 6.4506 2.2420 -0.1206 40 1 6.6403 2.2783 -1.8899 41 1 2.7896 5.5130 -0.3059 42 1 2.8442 6.4067 -1.8443 43 1 3.0057 4.6341 -1.8386 44 1 4.6065 7.7143 -0.6510 45 1 6.2165 6.9679 -0.5128 46 1 3.8307 8.3058 -2.8930 47 1 5.7674 9.5601 -1.9644 48 1 7.3147 8.6840 -1.8843 49 1 6.4559 8.7301 -4.5745 50 1 7.5606 10.4396 -7.2174 51 1 3.0299 3.7406 -0.1168 52 1 4.3783 3.2468 0.9392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284417362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:34 Heat of formation + Delta-G solvation = -138.613248 kcal Electronic energy + Delta-G solvation = -30917.459042 eV Core-core repulsion = 26723.060151 eV Total energy + Delta-G solvation = -4194.398891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.85435 -40.73936 -39.05220 -38.08054 -36.54959 -35.85607 -34.36949 -33.39170 -33.28856 -32.47221 -30.74995 -28.02924 -27.32553 -26.89874 -25.51370 -24.41538 -23.97833 -22.80355 -22.04341 -20.24528 -19.81142 -19.26934 -18.35881 -18.09955 -17.73864 -17.34680 -16.78453 -16.74873 -16.49271 -16.40095 -16.19241 -15.76850 -15.26284 -15.01588 -14.91492 -14.78152 -14.54301 -14.37836 -14.25698 -13.98320 -13.83104 -13.70710 -13.55447 -13.17369 -13.04343 -12.95978 -12.78872 -12.66368 -12.60111 -12.49767 -12.21246 -12.05860 -11.99620 -11.95947 -11.86618 -11.85160 -11.62628 -11.31617 -11.01337 -10.97495 -10.67766 -9.72670 -9.61494 -9.04914 -7.97111 -5.27694 1.41862 1.44678 1.47705 1.56059 1.65222 1.83407 2.06422 2.53517 3.33354 3.38098 3.43138 3.47926 3.70359 3.74901 3.77925 3.92405 4.01463 4.10394 4.12752 4.15121 4.20697 4.26850 4.30364 4.41017 4.45206 4.51248 4.55601 4.60848 4.65156 4.69100 4.72806 4.79848 4.87058 4.88577 4.93778 5.01555 5.07605 5.09978 5.13906 5.17519 5.33819 5.36845 5.41505 5.45074 5.47788 6.23161 6.27113 6.39804 6.84513 7.04638 7.16826 7.29506 8.05015 8.28503 9.26392 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023360 B = 0.002041 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.350344 B =13715.080241 C =14221.830812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.137 4.137 3 C 0.506 3.494 4 O -0.584 6.584 5 N -0.611 5.611 6 C 0.101 3.899 7 C -0.128 4.128 8 C -0.101 4.101 9 C -0.110 4.110 10 H 0.101 0.899 11 C 0.510 3.490 12 O -0.576 6.576 13 N -0.603 5.603 14 C 0.077 3.923 15 C 0.095 3.905 16 C 0.105 3.895 17 H 0.063 0.937 18 O -0.562 6.562 19 C 0.124 3.876 20 N -0.741 5.741 21 C -0.249 4.249 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.980 3.020 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.266 1.266 29 C 0.115 3.885 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.115 0.885 45 H 0.083 0.917 46 H 0.384 0.616 47 H 0.041 0.959 48 H 0.024 0.976 49 H 0.374 0.626 50 H 0.251 0.749 51 H 0.101 0.899 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 -26.673 18.161 34.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.177 4.177 3 C 0.296 3.704 4 O -0.464 6.464 5 N -0.344 5.344 6 C -0.020 4.020 7 C -0.166 4.166 8 C -0.139 4.139 9 C -0.132 4.132 10 H 0.119 0.881 11 C 0.298 3.702 12 O -0.456 6.456 13 N -0.334 5.334 14 C -0.065 4.065 15 C -0.028 4.028 16 C 0.044 3.956 17 H 0.081 0.919 18 O -0.369 6.369 19 C -0.003 4.003 20 N -0.384 5.384 21 C -0.381 4.381 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.621 5.621 25 Si 0.808 3.192 26 H -0.215 1.215 27 H -0.220 1.220 28 H -0.190 1.190 29 C -0.008 4.008 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.091 0.909 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.233 0.767 47 H 0.059 0.941 48 H 0.042 0.958 49 H 0.206 0.794 50 H 0.060 0.940 51 H 0.119 0.881 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.816 -26.431 17.935 34.417 hybrid contribution 0.588 1.560 -0.616 1.777 sum -12.228 -24.871 17.319 32.681 Atomic orbital electron populations 1.21549 0.93738 1.02558 1.01772 1.21744 0.97895 0.91455 1.06564 1.21577 0.81204 0.93217 0.74372 1.90684 1.55815 1.48201 1.51689 1.48255 1.06135 1.06988 1.73009 1.22101 0.90753 0.89815 0.99379 1.21936 0.99526 0.95981 0.99159 1.21351 0.95941 0.93777 1.02842 1.21633 0.98536 0.91362 1.01625 0.88094 1.21068 0.86640 0.87184 0.75285 1.90702 1.16188 1.87567 1.51118 1.47840 1.08565 1.05376 1.71652 1.22124 0.77780 1.04120 1.02437 1.22065 1.00676 0.84154 0.95933 1.22184 0.85803 0.95326 0.92276 0.91902 1.86586 1.30529 1.64723 1.55026 1.21420 0.97168 0.94442 0.87302 1.42454 1.68223 1.24683 1.03039 1.19686 1.27515 0.98395 0.92494 0.90357 1.25688 1.03341 1.02821 0.95333 1.69861 1.53464 1.40924 0.97861 0.85052 0.77946 0.79131 0.77075 1.21459 1.22031 1.19039 1.21656 0.97446 0.85215 0.96497 0.93587 0.93737 0.89742 0.86406 0.86238 0.89921 0.86120 0.87883 0.91142 0.91524 0.92556 0.90725 0.89517 0.90895 0.86669 0.89850 0.76724 0.94116 0.95831 0.79449 0.93990 0.88126 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.20 71.98 0.66 -0.70 16 2 C -0.14 -0.95 4.77 29.85 0.14 -0.81 16 3 C 0.51 7.81 7.70 87.66 0.67 8.48 16 4 O -0.58 -14.11 15.39 -3.04 -0.05 -14.16 16 5 N -0.61 -7.95 2.97 -818.83 -2.43 -10.39 16 6 C 0.10 0.63 6.34 86.36 0.55 1.18 16 7 C -0.13 -1.13 6.08 30.67 0.19 -0.95 16 8 C -0.10 -1.74 4.46 30.62 0.14 -1.61 16 9 C -0.11 -2.15 1.87 -11.45 -0.02 -2.17 16 10 H 0.10 1.98 7.41 -2.39 -0.02 1.97 16 11 C 0.51 13.87 7.08 87.66 0.62 14.49 16 12 O -0.58 -20.42 15.56 -3.05 -0.05 -20.47 16 13 N -0.60 -14.69 2.84 -846.77 -2.40 -17.09 16 14 C 0.08 1.43 8.61 127.77 1.10 2.53 16 15 C 0.10 2.51 5.06 86.38 0.44 2.94 16 16 C 0.10 3.64 3.30 30.59 0.10 3.74 16 17 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 18 O -0.56 -18.96 11.91 -148.98 -1.77 -20.74 16 19 C 0.12 5.11 5.92 86.38 0.51 5.62 16 20 N -0.74 -40.05 5.49 -343.46 -1.89 -41.94 16 21 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16 22 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 24 N -0.97 -62.30 13.06 21.65 0.28 -62.02 16 25 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 29 C 0.12 1.95 5.28 86.37 0.46 2.40 16 30 H 0.04 0.59 8.10 -2.38 -0.02 0.58 16 31 H 0.04 0.60 8.10 -2.39 -0.02 0.58 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.12 0.29 7.69 -2.39 -0.02 0.27 16 34 H 0.12 0.23 7.94 -2.39 -0.02 0.21 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.12 0.02 5.93 -2.39 -0.01 0.01 16 37 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 40 H 0.06 1.21 8.07 -2.38 -0.02 1.19 16 41 H 0.07 1.17 7.07 -2.38 -0.02 1.15 16 42 H 0.09 1.53 7.11 -2.39 -0.02 1.52 16 43 H 0.07 1.35 5.95 -2.39 -0.01 1.34 16 44 H 0.12 2.25 8.07 -2.39 -0.02 2.23 16 45 H 0.08 2.41 7.42 -2.38 -0.02 2.39 16 46 H 0.38 9.88 9.04 -74.06 -0.67 9.21 16 47 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.37 22.13 7.54 -92.71 -0.70 21.43 16 50 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 51 H 0.10 1.89 3.58 -2.38 -0.01 1.88 16 52 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -83.62 407.69 0.15 -83.47 By element: Atomic # 1 Polarization: 36.98 SS G_CDS: -0.44 Total: 36.54 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.86 Total: 17.17 kcal Atomic # 7 Polarization: -124.99 SS G_CDS: -6.44 Total: -131.43 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -1.87 Total: -55.36 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -83.62 0.15 -83.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284417362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.142 kcal (2) G-P(sol) polarization free energy of solvation -83.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds