Wall clock time and date at job start Wed Apr 1 2020 01:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42891 * 113.99597 * 2 1 4 4 C 1.50706 * 109.47033 * 179.97438 * 3 2 1 5 5 O 1.21277 * 119.99892 * 359.97438 * 4 3 2 6 6 N 1.34774 * 119.99970 * 179.97438 * 4 3 2 7 7 C 1.46498 * 119.99926 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47237 * 180.02562 * 7 6 4 9 9 C 1.50709 * 109.46922 * 180.02562 * 8 7 6 10 10 O 1.21277 * 120.00252 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99611 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99926 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.47023 * 34.99938 * 12 11 9 14 14 C 1.52998 * 109.47191 * 275.00175 * 12 11 9 15 15 C 1.52998 * 109.47434 * 154.99776 * 12 11 9 16 16 C 1.53037 * 109.46124 * 300.03166 * 15 12 11 17 17 C 1.53194 * 109.31015 * 178.59855 * 16 15 12 18 18 N 1.46919 * 108.76801 * 54.65446 * 17 16 15 19 19 C 1.36937 * 120.63229 * 126.40255 * 18 17 16 20 20 H 1.07998 * 119.99825 * 332.61185 * 19 18 17 21 21 C 1.38817 * 120.00256 * 152.60748 * 19 18 17 22 22 N 1.31616 * 120.00259 * 159.34147 * 21 19 18 23 23 Si 1.86804 * 119.99770 * 339.34854 * 21 19 18 24 24 H 1.48500 * 109.47081 * 92.93890 * 23 21 19 25 25 H 1.48500 * 109.46846 * 212.93823 * 23 21 19 26 26 H 1.48491 * 109.46970 * 332.94028 * 23 21 19 27 27 C 1.46926 * 118.73985 * 306.38211 * 18 17 16 28 28 C 1.53046 * 109.46294 * 179.97438 * 15 12 11 29 29 H 1.09001 * 109.47281 * 60.00132 * 1 2 3 30 30 H 1.09002 * 109.47473 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47655 * 300.00031 * 1 2 3 32 32 H 1.09002 * 109.47704 * 59.99854 * 3 2 1 33 33 H 1.09004 * 109.47751 * 299.99667 * 3 2 1 34 34 H 0.96996 * 120.00199 * 0.02562 * 6 4 3 35 35 H 1.09001 * 109.47355 * 59.99696 * 7 6 4 36 36 H 1.09004 * 109.47143 * 299.99934 * 7 6 4 37 37 H 1.08995 * 109.47268 * 60.00221 * 8 7 6 38 38 H 1.09000 * 109.47241 * 299.99641 * 8 7 6 39 39 H 0.96996 * 120.00199 * 0.02562 * 11 9 8 40 40 H 1.08994 * 109.47433 * 299.99504 * 14 12 11 41 41 H 1.09005 * 109.47417 * 179.97438 * 14 12 11 42 42 H 1.08996 * 109.47259 * 59.99858 * 14 12 11 43 43 H 1.09002 * 109.45794 * 60.00538 * 15 12 11 44 44 H 1.09000 * 109.49340 * 298.56222 * 16 15 12 45 45 H 1.08997 * 109.49899 * 58.66164 * 16 15 12 46 46 H 1.09003 * 109.60071 * 294.86123 * 17 16 15 47 47 H 1.09005 * 109.70316 * 174.50361 * 17 16 15 48 48 H 0.96993 * 120.00530 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.58878 * 293.82081 * 27 18 17 50 50 H 1.09000 * 109.70425 * 173.46133 * 27 18 17 51 51 H 1.09004 * 109.49680 * 301.33995 * 28 15 12 52 52 H 1.09003 * 109.49182 * 61.40290 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2763 2.2969 0.0002 7 6 5.7368 2.1813 0.0014 8 6 6.3590 3.5790 0.0013 9 6 7.8614 3.4600 0.0019 10 8 8.3830 2.3651 0.0028 11 7 8.6253 4.5704 0.0013 12 6 10.0857 4.4548 0.0025 13 1 10.3818 3.5863 -0.5859 14 6 10.5832 4.2905 1.4400 15 6 10.6977 5.7171 -0.6080 16 6 10.1994 5.8815 -2.0455 17 6 10.7865 7.1649 -2.6416 18 7 12.2493 7.1203 -2.5116 19 6 13.0528 7.3030 -3.6053 20 1 12.6911 7.0464 -4.5900 21 6 14.3323 7.8181 -3.4483 22 7 15.2386 7.6256 -4.3831 23 14 14.7678 8.7845 -1.9101 24 1 15.3488 7.8671 -0.8972 25 1 15.7584 9.8370 -2.2508 26 1 13.5425 9.4174 -1.3597 27 6 12.8337 6.8763 -1.1858 28 6 12.2234 5.5964 -0.6061 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.8592 3.1725 -0.0001 35 1 6.0591 1.6395 -0.8878 36 1 6.0578 1.6411 0.8921 37 1 6.0368 4.1203 0.8907 38 1 6.0381 4.1195 -0.8892 39 1 8.2081 5.4460 0.0010 40 1 10.2871 5.1589 2.0284 41 1 11.6698 4.2040 1.4408 42 1 10.1472 3.3912 1.8748 43 1 10.4015 6.5854 -0.0194 44 1 10.5168 5.0253 -2.6407 45 1 9.1112 5.9440 -2.0485 46 1 10.3980 8.0293 -2.1030 47 1 10.5154 7.2385 -3.6948 48 1 16.1324 7.9858 -4.2737 49 1 12.6121 7.7171 -0.5285 50 1 13.9134 6.7578 -1.2763 51 1 12.5760 5.4557 0.4158 52 1 12.5214 4.7425 -1.2145 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284686172.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:55 Heat of formation + Delta-G solvation = -133.698969 kcal Electronic energy + Delta-G solvation = -29683.917748 eV Core-core repulsion = 25489.731956 eV Total energy + Delta-G solvation = -4194.185792 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.21589 -40.73008 -39.59528 -38.43924 -36.98456 -36.18201 -34.53596 -33.26534 -32.24526 -31.94680 -30.58755 -29.45011 -27.17428 -26.86151 -25.16661 -24.26721 -23.88501 -22.04010 -21.84002 -21.40155 -20.72839 -18.83546 -18.48513 -18.07945 -17.63197 -17.40718 -17.32416 -16.86311 -16.66503 -16.25902 -15.90821 -15.67845 -15.48314 -15.30549 -15.18240 -14.96186 -14.68021 -14.39759 -14.38293 -14.26504 -14.04292 -13.69352 -13.53574 -13.41178 -13.13348 -12.92294 -12.70784 -12.57749 -12.46904 -12.37403 -12.34219 -12.18341 -11.99782 -11.62818 -11.50030 -11.29809 -11.16189 -11.05348 -10.81586 -10.75059 -10.62663 -10.21102 -10.00833 -8.89697 -8.15458 -5.46594 1.31578 1.42145 1.52010 1.53804 1.68725 1.70315 2.35348 2.43396 3.07279 3.16546 3.39658 3.61239 3.70427 3.81776 3.91434 3.94959 4.06566 4.09217 4.22709 4.31158 4.37590 4.40556 4.47731 4.51443 4.52627 4.56847 4.59746 4.60212 4.73241 4.83916 4.86634 4.88518 4.89429 4.95156 5.01963 5.02667 5.11768 5.14659 5.22712 5.30401 5.32437 5.38935 5.53367 5.66237 5.88589 6.06093 6.13749 6.53730 6.64865 6.95272 7.22562 7.34969 7.66016 8.05376 9.04787 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028897 B = 0.001663 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.713721 B =16834.445026 C =17268.442149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.046 3.954 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.708 5.708 7 C 0.139 3.861 8 C -0.135 4.135 9 C 0.511 3.489 10 O -0.592 6.592 11 N -0.706 5.706 12 C 0.154 3.846 13 H 0.055 0.945 14 C -0.158 4.158 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.142 3.858 18 N -0.622 5.622 19 C -0.250 4.250 20 H 0.045 0.955 21 C -0.039 4.039 22 N -0.961 5.961 23 Si 0.952 3.048 24 H -0.276 1.276 25 H -0.313 1.313 26 H -0.254 1.254 27 C 0.120 3.880 28 C -0.122 4.122 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.425 0.575 35 H 0.046 0.954 36 H 0.050 0.950 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.419 0.581 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.044 0.956 43 H 0.096 0.904 44 H 0.034 0.966 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.048 0.952 48 H 0.260 0.740 49 H 0.041 0.959 50 H 0.043 0.957 51 H 0.086 0.914 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.795 -2.937 15.864 35.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.033 4.033 4 C 0.289 3.711 5 O -0.462 6.462 6 N -0.363 5.363 7 C 0.014 3.986 8 C -0.175 4.175 9 C 0.298 3.702 10 O -0.473 6.473 11 N -0.359 5.359 12 C 0.048 3.952 13 H 0.073 0.927 14 C -0.216 4.216 15 C -0.093 4.093 16 C -0.155 4.155 17 C 0.018 3.982 18 N -0.347 5.347 19 C -0.380 4.380 20 H 0.063 0.937 21 C -0.234 4.234 22 N -0.608 5.608 23 Si 0.781 3.219 24 H -0.202 1.202 25 H -0.243 1.243 26 H -0.178 1.178 27 C -0.005 4.005 28 C -0.162 4.162 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.264 0.736 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.256 0.744 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.063 0.937 43 H 0.115 0.885 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.063 0.937 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.061 0.939 51 H 0.105 0.895 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -30.836 -4.606 15.805 34.955 hybrid contribution 0.782 0.985 -0.143 1.266 sum -30.054 -3.620 15.662 34.083 Atomic orbital electron populations 1.23026 0.78188 1.04040 1.01808 1.87974 1.22244 1.27206 1.95841 1.22417 0.88350 0.86690 1.05809 1.21122 0.90577 0.84016 0.75383 1.90751 1.76001 1.29161 1.50309 1.45598 1.06091 1.09452 1.75176 1.20805 0.79148 0.97114 1.01551 1.21758 0.89452 0.97629 1.08675 1.21020 0.90593 0.83754 0.74835 1.90757 1.76255 1.28712 1.51535 1.45906 1.06154 1.09510 1.74281 1.20794 0.79912 0.97699 0.96756 0.92689 1.22154 1.01803 1.02104 0.95552 1.21221 0.94304 0.97418 0.96311 1.21919 1.00603 0.97585 0.95415 1.21136 0.81821 0.96138 0.99124 1.44492 1.02426 1.83533 1.04217 1.18871 0.95957 1.35271 0.87897 0.93685 1.25963 0.96316 1.00587 1.00502 1.69988 1.03876 1.48802 1.38093 0.85823 0.77549 0.78584 0.79948 1.20231 1.24264 1.17841 1.21404 0.96641 0.96224 0.86209 1.21998 0.95713 0.97543 1.00932 0.92073 0.89207 0.91943 0.86662 0.86838 0.73632 0.93598 0.93178 0.84173 0.84647 0.74367 0.90399 0.91337 0.93678 0.88549 0.94720 0.88955 0.93699 0.93367 0.93077 0.94109 0.93876 0.89541 0.93863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.41 -7.11 10.24 -129.94 -1.33 -8.44 16 3 C 0.05 0.43 6.42 71.24 0.46 0.89 16 4 C 0.50 9.01 7.91 87.66 0.69 9.70 16 5 O -0.58 -18.50 16.50 16.02 0.26 -18.24 16 6 N -0.71 -7.24 5.56 -463.06 -2.57 -9.81 16 7 C 0.14 2.26 4.96 86.38 0.43 2.69 16 8 C -0.14 -1.09 5.81 29.85 0.17 -0.91 16 9 C 0.51 9.47 7.79 87.66 0.68 10.16 16 10 O -0.59 -18.06 15.64 -3.02 -0.05 -18.11 16 11 N -0.71 -10.73 4.36 -442.54 -1.93 -12.66 16 12 C 0.15 3.34 2.16 44.99 0.10 3.44 16 13 H 0.05 1.61 7.58 -2.39 -0.02 1.59 16 14 C -0.16 -3.12 9.13 71.98 0.66 -2.46 16 15 C -0.07 -1.75 1.79 -10.77 -0.02 -1.77 16 16 C -0.12 -3.14 5.22 30.67 0.16 -2.98 16 17 C 0.14 4.97 6.52 86.36 0.56 5.53 16 18 N -0.62 -28.21 2.77 -699.09 -1.94 -30.15 16 19 C -0.25 -14.23 10.04 84.03 0.84 -13.38 16 20 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 21 C -0.04 -2.31 5.23 84.86 0.44 -1.86 16 22 N -0.96 -61.15 13.97 21.65 0.30 -60.85 16 23 Si 0.95 46.02 24.35 68.60 1.67 47.69 16 24 H -0.28 -12.60 6.62 99.48 0.66 -11.94 16 25 H -0.31 -15.51 7.11 99.48 0.71 -14.81 16 26 H -0.25 -11.42 6.63 99.48 0.66 -10.76 16 27 C 0.12 4.79 4.20 86.36 0.36 5.15 16 28 C -0.12 -3.80 5.04 30.67 0.15 -3.64 16 29 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.42 -0.01 8.47 -92.71 -0.79 -0.79 16 35 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 36 H 0.05 1.11 8.10 -2.38 -0.02 1.09 16 37 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.14 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.42 3.22 8.39 -92.71 -0.78 2.44 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 1.39 6.40 -2.38 -0.02 1.37 16 42 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.77 7.41 -2.39 -0.02 1.75 16 46 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.05 1.78 7.93 -2.38 -0.02 1.77 16 48 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 49 H 0.04 1.51 7.08 -2.39 -0.02 1.49 16 50 H 0.04 1.97 4.50 -2.39 -0.01 1.96 16 51 H 0.09 2.21 6.36 -2.39 -0.02 2.20 16 52 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -93.09 409.49 0.63 -92.46 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -0.74 Total: 6.12 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.95 Total: 11.98 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -6.14 Total: -113.47 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.11 Total: -44.78 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.67 Total: 47.69 kcal Total: -93.09 0.63 -92.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284686172.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.240 kcal (2) G-P(sol) polarization free energy of solvation -93.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds