Wall clock time and date at job start Wed Apr 1 2020 00:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47500 * 2 1 4 4 O 1.42900 * 109.47390 * 120.00236 * 2 1 3 5 5 C 1.42905 * 114.00090 * 149.99875 * 4 2 1 6 6 C 1.50697 * 109.46909 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00454 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99786 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00178 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46978 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.05715 * 306.41405 * 10 9 8 12 12 C 1.53878 * 110.03376 * 67.83743 * 10 9 8 13 13 C 1.54464 * 106.68737 * 119.44010 * 12 10 9 14 14 C 1.54886 * 104.10083 * 23.34083 * 13 12 10 15 15 H 1.08994 * 110.75726 * 80.70844 * 14 13 12 16 16 N 1.46901 * 110.75362 * 203.89480 * 14 13 12 17 17 C 1.46898 * 111.00189 * 271.06408 * 16 14 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.54276 * 110.02934 * 184.99876 * 10 9 8 30 30 H 1.09003 * 109.46817 * 299.99938 * 1 2 3 31 31 H 1.09001 * 109.47259 * 59.99327 * 1 2 3 32 32 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46817 * 240.00062 * 2 1 3 34 34 H 1.09003 * 109.47564 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47414 * 300.00578 * 3 2 1 36 36 H 1.09003 * 109.47035 * 60.00196 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99603 * 5 4 2 38 38 H 1.09006 * 109.46822 * 300.00140 * 5 4 2 39 39 H 0.96998 * 120.00057 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.46816 * 60.00318 * 9 8 6 41 41 H 1.09000 * 109.46836 * 300.00154 * 9 8 6 42 42 H 1.09003 * 110.02856 * 238.56700 * 12 10 9 43 43 H 1.09000 * 110.02850 * 359.97438 * 12 10 9 44 44 H 1.09004 * 110.40224 * 264.75921 * 13 12 10 45 45 H 1.08992 * 110.66318 * 142.05351 * 13 12 10 46 46 H 1.00907 * 110.99760 * 147.11208 * 16 14 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 14 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.08996 * 110.48427 * 98.42590 * 29 10 9 52 52 H 1.08999 * 110.59435 * 335.84507 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6694 -1.9989 2.2744 7 8 2.9493 -1.9287 3.2478 8 7 4.8303 -2.6801 2.3427 9 6 5.2228 -3.3353 3.5930 10 6 6.5713 -4.0322 3.4020 11 1 6.5291 -4.6986 2.5406 12 6 7.6822 -2.9858 3.2051 13 6 8.6897 -3.1859 4.3587 14 6 8.4712 -4.6544 4.8000 15 1 8.9963 -5.3398 4.1349 16 7 8.9018 -4.8495 6.1909 17 6 10.3236 -5.2132 6.2557 18 6 10.7278 -5.4053 7.6947 19 8 9.9117 -5.2546 8.5792 20 7 11.9959 -5.7456 7.9987 21 6 12.3639 -5.9199 9.3079 22 1 11.6374 -5.7849 10.0955 23 6 13.6699 -6.2763 9.6210 24 7 14.5525 -6.4458 8.6623 25 14 14.1710 -6.5144 11.4047 26 1 13.9543 -7.9308 11.7948 27 1 15.6067 -6.1707 11.5657 28 1 13.3503 -5.6312 12.2716 29 6 6.9378 -4.8305 4.6703 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 4.0200 -0.5875 0.7123 38 1 3.1809 -2.0707 0.1984 39 1 5.4061 -2.7366 1.5641 40 1 4.4685 -4.0721 3.8693 41 1 5.3084 -2.5890 4.3828 42 1 8.1791 -3.1444 2.2479 43 1 7.2604 -1.9815 3.2451 44 1 8.4678 -2.5039 5.1796 45 1 9.7110 -3.0412 4.0069 46 1 8.3302 -5.5411 6.6527 47 1 10.9226 -4.4176 5.8128 48 1 10.4869 -6.1401 5.7060 49 1 12.6486 -5.8665 7.2913 50 1 15.4643 -6.6942 8.8810 51 1 6.6839 -5.8830 4.5452 52 1 6.4312 -4.4179 5.5428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316652008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:32 Heat of formation + Delta-G solvation = -137.504737 kcal Electronic energy + Delta-G solvation = -28636.103654 eV Core-core repulsion = 24441.752832 eV Total energy + Delta-G solvation = -4194.350822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.25604 -39.08288 -38.38220 -37.92213 -35.38976 -34.04924 -33.42454 -33.21629 -31.20495 -30.11299 -28.82577 -28.02647 -27.57207 -25.82944 -24.34665 -23.64263 -21.82649 -21.13441 -20.30191 -19.87082 -19.15119 -17.86446 -17.59470 -17.49441 -16.57608 -16.39844 -16.13484 -15.76991 -15.14635 -15.12327 -14.84589 -14.61915 -14.50193 -14.17855 -13.91146 -13.61551 -13.44681 -13.37896 -13.28568 -12.97484 -12.68842 -12.61096 -12.44364 -12.38385 -11.93052 -11.85505 -11.63931 -11.45569 -11.30110 -11.23149 -11.10706 -11.06562 -10.96519 -10.79842 -10.54728 -10.38345 -10.20630 -10.16896 -10.06486 -9.49686 -9.39697 -8.42859 -8.04793 -7.94425 -6.40732 -3.81382 2.29026 2.40948 3.18778 3.27350 3.33691 3.50586 3.92613 4.09152 4.22822 4.29782 4.33373 4.38708 4.46145 4.52931 4.60377 4.65922 4.72181 4.72835 5.05708 5.06391 5.10850 5.20329 5.22425 5.25808 5.29706 5.30690 5.32161 5.34832 5.44210 5.51459 5.63341 5.69175 5.72617 5.74457 5.75972 5.79703 5.90988 6.01940 6.03419 6.13301 6.17631 6.26202 6.37049 6.62125 7.12810 7.30341 7.56388 7.70175 7.89320 8.07876 8.62747 9.19252 9.55770 10.07435 10.77092 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.001316 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.820279 B =21279.203793 C =21410.252439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.044 3.956 6 C 0.511 3.489 7 O -0.517 6.517 8 N -0.729 5.729 9 C 0.127 3.873 10 C -0.099 4.099 11 H 0.078 0.922 12 C -0.122 4.122 13 C -0.114 4.114 14 C 0.081 3.919 15 H 0.049 0.951 16 N -0.661 5.661 17 C 0.051 3.949 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.118 4.118 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.400 0.600 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.062 0.938 46 H 0.350 0.650 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.067 0.933 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 9.469 -25.223 33.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.235 4.235 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.391 6.391 8 N -0.383 5.383 9 C 0.004 3.996 10 C -0.119 4.119 11 H 0.096 0.904 12 C -0.160 4.160 13 C -0.152 4.152 14 C -0.029 4.029 15 H 0.067 0.933 16 N -0.294 5.294 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.234 0.766 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.170 0.830 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.086 0.914 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.548 10.238 -23.579 32.909 hybrid contribution 1.360 -1.167 -0.629 1.899 sum -19.188 9.071 -24.209 32.195 Atomic orbital electron populations 1.21858 0.93191 1.02955 1.02737 1.22184 0.95432 0.92517 0.87723 1.22322 1.01521 0.96681 1.02927 1.88082 1.34494 1.69694 1.35323 1.22227 0.88417 0.97142 0.95810 1.20255 0.81306 0.79108 0.89798 1.90760 1.51621 1.59177 1.37523 1.45915 1.22100 1.54738 1.15529 1.21537 0.95568 0.96659 0.85787 1.21937 0.93611 0.97150 0.99177 0.90403 1.22280 0.95992 0.98660 0.99067 1.22417 0.98353 0.96855 0.97598 1.22514 0.94149 0.96580 0.89661 0.93299 1.60121 1.02850 1.53131 1.13273 1.21708 0.90329 0.99572 0.96520 1.19838 0.83629 0.84189 0.89743 1.90524 1.51213 1.56047 1.48885 1.41867 1.08755 1.60611 1.08874 1.19715 0.95448 1.43675 0.84057 0.87927 1.25252 0.95572 0.97285 0.99790 1.69615 1.04433 1.47943 1.32413 0.85862 0.77639 0.78709 0.82119 1.20441 1.20924 1.19384 1.22488 0.95849 0.99760 0.97548 0.91512 0.91077 0.91858 0.92052 0.92470 0.91448 0.91470 0.90332 0.90347 0.76602 0.91291 0.90826 0.91881 0.91446 0.90311 0.91903 0.82998 0.89714 0.93984 0.77494 0.91910 0.91399 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.56 37.16 0.36 -0.46 16 2 C 0.08 0.47 3.34 -26.73 -0.09 0.38 16 3 C -0.18 -0.91 9.53 37.16 0.35 -0.55 16 4 O -0.36 -3.37 9.52 -55.14 -0.52 -3.89 16 5 C 0.04 0.29 6.23 36.00 0.22 0.52 16 6 C 0.51 5.01 7.91 -10.99 -0.09 4.92 16 7 O -0.52 -7.77 16.50 -14.35 -0.24 -8.01 16 8 N -0.73 -5.16 5.34 -60.29 -0.32 -5.48 16 9 C 0.13 1.09 4.69 -4.04 -0.02 1.07 16 10 C -0.10 -0.74 2.96 -89.50 -0.27 -1.01 16 11 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 12 C -0.12 -0.94 6.19 -25.51 -0.16 -1.10 16 13 C -0.11 -1.23 6.52 -24.97 -0.16 -1.40 16 14 C 0.08 0.95 3.20 -65.72 -0.21 0.74 16 15 H 0.05 0.55 7.86 -51.93 -0.41 0.15 16 16 N -0.66 -10.52 6.00 -105.90 -0.64 -11.16 16 17 C 0.05 0.91 6.04 -4.98 -0.03 0.88 16 18 C 0.44 10.47 7.82 -10.99 -0.09 10.38 16 19 O -0.58 -15.97 15.78 5.55 0.09 -15.89 16 20 N -0.56 -14.38 5.29 -10.96 -0.06 -14.44 16 21 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 25 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 29 C -0.12 -1.14 5.77 -25.07 -0.14 -1.28 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.25 7.79 -51.93 -0.40 -0.15 16 34 H 0.06 0.27 7.87 -51.93 -0.41 -0.14 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.34 7.87 -51.93 -0.41 -0.07 16 38 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 39 H 0.40 1.57 8.35 -40.82 -0.34 1.23 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.52 7.61 -51.93 -0.40 0.13 16 44 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.35 5.77 8.16 -39.29 -0.32 5.45 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 48 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 49 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 50 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 LS Contribution 426.03 15.07 6.42 6.42 Total: -1.00 -35.36 426.03 -9.39 -44.75 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -9.26 Total: 10.41 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -0.56 Total: 5.04 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.29 Total: -54.96 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.67 Total: -27.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -35.36 -9.39 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316652008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.753 kcal (2) G-P(sol) polarization free energy of solvation -35.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds