Wall clock time and date at job start Wed Apr 1 2020 00:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47500 * 2 1 4 4 O 1.42900 * 109.47390 * 120.00236 * 2 1 3 5 5 C 1.42905 * 114.00090 * 149.99875 * 4 2 1 6 6 C 1.50697 * 109.46909 * 180.02562 * 5 4 2 7 7 O 1.21276 * 120.00454 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99786 * 179.97438 * 6 5 4 9 9 C 1.46503 * 120.00178 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.46978 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.05715 * 306.41405 * 10 9 8 12 12 C 1.53878 * 110.03376 * 67.83743 * 10 9 8 13 13 C 1.54464 * 106.68737 * 119.44010 * 12 10 9 14 14 C 1.54886 * 104.10083 * 23.34083 * 13 12 10 15 15 H 1.08994 * 110.75726 * 80.70844 * 14 13 12 16 16 N 1.46901 * 110.75362 * 203.89480 * 14 13 12 17 17 C 1.46898 * 111.00189 * 271.06408 * 16 14 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 14 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46850 * 90.00463 * 25 23 21 27 27 H 1.48504 * 109.47159 * 210.00116 * 25 23 21 28 28 H 1.48497 * 109.47216 * 330.00562 * 25 23 21 29 29 C 1.54276 * 110.02934 * 184.99876 * 10 9 8 30 30 H 1.09003 * 109.46817 * 299.99938 * 1 2 3 31 31 H 1.09001 * 109.47259 * 59.99327 * 1 2 3 32 32 H 1.08994 * 109.47182 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46817 * 240.00062 * 2 1 3 34 34 H 1.09003 * 109.47564 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47414 * 300.00578 * 3 2 1 36 36 H 1.09003 * 109.47035 * 60.00196 * 3 2 1 37 37 H 1.08994 * 109.47353 * 59.99603 * 5 4 2 38 38 H 1.09006 * 109.46822 * 300.00140 * 5 4 2 39 39 H 0.96998 * 120.00057 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.46816 * 60.00318 * 9 8 6 41 41 H 1.09000 * 109.46836 * 300.00154 * 9 8 6 42 42 H 1.09003 * 110.02856 * 238.56700 * 12 10 9 43 43 H 1.09000 * 110.02850 * 359.97438 * 12 10 9 44 44 H 1.09004 * 110.40224 * 264.75921 * 13 12 10 45 45 H 1.08992 * 110.66318 * 142.05351 * 13 12 10 46 46 H 1.00907 * 110.99760 * 147.11208 * 16 14 13 47 47 H 1.09000 * 109.46741 * 60.00112 * 17 16 14 48 48 H 1.09002 * 109.46898 * 300.00102 * 17 16 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 50 50 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 51 51 H 1.08996 * 110.48427 * 98.42590 * 29 10 9 52 52 H 1.08999 * 110.59435 * 335.84507 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2661 -1.3245 0.9885 6 6 3.6694 -1.9989 2.2744 7 8 2.9493 -1.9287 3.2478 8 7 4.8303 -2.6801 2.3427 9 6 5.2228 -3.3353 3.5930 10 6 6.5713 -4.0322 3.4020 11 1 6.5291 -4.6986 2.5406 12 6 7.6822 -2.9858 3.2051 13 6 8.6897 -3.1859 4.3587 14 6 8.4712 -4.6544 4.8000 15 1 8.9963 -5.3398 4.1349 16 7 8.9018 -4.8495 6.1909 17 6 10.3236 -5.2132 6.2557 18 6 10.7278 -5.4053 7.6947 19 8 9.9117 -5.2546 8.5792 20 7 11.9959 -5.7456 7.9987 21 6 12.3639 -5.9199 9.3079 22 1 11.6374 -5.7849 10.0955 23 6 13.6699 -6.2763 9.6210 24 7 14.5525 -6.4458 8.6623 25 14 14.1710 -6.5144 11.4047 26 1 13.9543 -7.9308 11.7948 27 1 15.6067 -6.1707 11.5657 28 1 13.3503 -5.6312 12.2716 29 6 6.9378 -4.8305 4.6703 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 4.0200 -0.5875 0.7123 38 1 3.1809 -2.0707 0.1984 39 1 5.4061 -2.7366 1.5641 40 1 4.4685 -4.0721 3.8693 41 1 5.3084 -2.5890 4.3828 42 1 8.1791 -3.1444 2.2479 43 1 7.2604 -1.9815 3.2451 44 1 8.4678 -2.5039 5.1796 45 1 9.7110 -3.0412 4.0069 46 1 8.3302 -5.5411 6.6527 47 1 10.9226 -4.4176 5.8128 48 1 10.4869 -6.1401 5.7060 49 1 12.6486 -5.8665 7.2913 50 1 15.4643 -6.6942 8.8810 51 1 6.6839 -5.8830 4.5452 52 1 6.4312 -4.4179 5.5428 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316652008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:31 Heat of formation + Delta-G solvation = -164.219168 kcal Electronic energy + Delta-G solvation = -28637.262079 eV Core-core repulsion = 24441.752832 eV Total energy + Delta-G solvation = -4195.509247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.98654 -40.27433 -39.54123 -38.86364 -36.46484 -35.87933 -34.56598 -33.69812 -33.25370 -30.91251 -29.76375 -28.77643 -28.05026 -27.32022 -25.56484 -24.82801 -22.24472 -21.89426 -21.30143 -20.95066 -20.54632 -19.88137 -18.24991 -18.06409 -17.78472 -17.25960 -16.99542 -16.78484 -16.54074 -16.26865 -15.99516 -15.71678 -15.56085 -15.37248 -15.08055 -14.75644 -14.47214 -14.12866 -14.07969 -13.89024 -13.57145 -13.53737 -13.40614 -13.15130 -13.06261 -12.88516 -12.85151 -12.69966 -12.41981 -12.34857 -12.12525 -12.05798 -11.94501 -11.81067 -11.64835 -11.61564 -11.51082 -11.27728 -10.86764 -10.63722 -10.33951 -10.12061 -10.01915 -9.29344 -8.47265 -5.96006 1.37608 1.41533 1.54332 1.57211 1.83470 2.04890 2.29133 2.91422 3.05116 3.20101 3.47780 3.59780 3.64091 3.79818 3.99647 4.02597 4.11018 4.22178 4.27264 4.28762 4.30978 4.33494 4.37505 4.46432 4.53572 4.57748 4.61603 4.70777 4.72916 4.75205 4.82284 4.88630 4.91718 4.94675 4.99106 5.04425 5.20389 5.26169 5.29720 5.33395 5.38672 5.38975 5.41155 5.53982 5.93548 6.17692 6.18985 6.45421 6.57769 6.60065 7.12282 7.24779 7.55777 8.11506 8.70158 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.038998 B = 0.001316 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.820279 B =21279.203793 C =21410.252439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.073 3.927 3 C -0.175 4.175 4 O -0.397 6.397 5 C 0.045 3.955 6 C 0.504 3.496 7 O -0.581 6.581 8 N -0.709 5.709 9 C 0.131 3.869 10 C -0.084 4.084 11 H 0.106 0.894 12 C -0.112 4.112 13 C -0.117 4.117 14 C 0.079 3.921 15 H 0.066 0.934 16 N -0.679 5.679 17 C 0.068 3.932 18 C 0.436 3.564 19 O -0.625 6.625 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.077 0.923 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.269 1.269 28 H -0.274 1.274 29 C -0.117 4.117 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.420 0.580 40 H 0.057 0.943 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.344 0.656 47 H 0.101 0.899 48 H 0.067 0.933 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.863 9.225 -28.381 35.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.016 3.984 3 C -0.233 4.233 4 O -0.317 6.317 5 C -0.034 4.034 6 C 0.291 3.709 7 O -0.460 6.460 8 N -0.364 5.364 9 C 0.007 3.993 10 C -0.103 4.103 11 H 0.125 0.875 12 C -0.150 4.150 13 C -0.155 4.155 14 C -0.030 4.030 15 H 0.083 0.917 16 N -0.312 5.312 17 C -0.065 4.065 18 C 0.223 3.777 19 O -0.511 6.511 20 N -0.210 5.210 21 C -0.466 4.466 22 H 0.095 0.905 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.155 4.155 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.258 0.742 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.084 0.916 46 H 0.163 0.837 47 H 0.119 0.881 48 H 0.085 0.915 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.098 0.902 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.695 9.991 -26.819 34.741 hybrid contribution 1.089 -1.075 0.336 1.567 sum -18.606 8.916 -26.483 33.571 Atomic orbital electron populations 1.21901 0.93379 1.02635 1.02963 1.22395 0.95440 0.92895 0.87628 1.22317 1.01839 0.96256 1.02868 1.88047 1.35791 1.70404 1.37433 1.22390 0.88272 0.98347 0.94374 1.20992 0.81055 0.78581 0.90261 1.90733 1.53681 1.61650 1.39924 1.45738 1.21596 1.53390 1.15659 1.21375 0.96085 0.95868 0.85945 1.21842 0.92483 0.97053 0.98944 0.87534 1.22235 0.95169 0.98698 0.98929 1.22419 0.99540 0.95596 0.97961 1.22662 0.95477 0.97443 0.87423 0.91650 1.60132 1.01795 1.53007 1.16235 1.21550 0.91616 1.01330 0.91955 1.20952 0.82521 0.82062 0.92135 1.90491 1.52194 1.57372 1.51081 1.41927 1.09615 1.61201 1.08211 1.19674 0.95901 1.46138 0.84892 0.90472 1.26012 0.94957 0.96211 1.03848 1.69669 1.04808 1.47533 1.34013 0.84946 0.77643 0.78743 0.77116 1.19555 1.19406 1.19937 1.22467 0.94255 1.00816 0.97996 0.93265 0.88865 0.92438 0.89519 0.91933 0.89628 0.93390 0.87576 0.87039 0.74241 0.92429 0.93304 0.89105 0.91450 0.93050 0.91578 0.83740 0.88131 0.91505 0.76942 0.91260 0.90211 0.91849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 2 C 0.07 0.76 3.34 30.59 0.10 0.86 16 3 C -0.18 -1.54 9.53 71.98 0.69 -0.85 16 4 O -0.40 -7.20 9.52 -129.94 -1.24 -8.44 16 5 C 0.05 0.50 6.23 71.24 0.44 0.95 16 6 C 0.50 9.51 7.91 87.66 0.69 10.21 16 7 O -0.58 -18.21 16.50 16.02 0.26 -17.94 16 8 N -0.71 -8.71 5.34 -463.06 -2.47 -11.18 16 9 C 0.13 2.15 4.69 86.38 0.40 2.55 16 10 C -0.08 -1.04 2.96 -10.07 -0.03 -1.07 16 11 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 12 C -0.11 -1.42 6.19 31.39 0.19 -1.22 16 13 C -0.12 -2.35 6.52 31.74 0.21 -2.15 16 14 C 0.08 1.73 3.20 46.20 0.15 1.87 16 15 H 0.07 1.26 7.86 -2.39 -0.02 1.24 16 16 N -0.68 -21.44 6.00 -488.94 -2.94 -24.38 16 17 C 0.07 2.33 6.04 85.56 0.52 2.85 16 18 C 0.44 21.06 7.82 87.66 0.69 21.75 16 19 O -0.62 -35.44 15.78 -3.05 -0.05 -35.49 16 20 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 21 C -0.34 -19.37 9.68 84.04 0.81 -18.55 16 22 H 0.08 4.75 7.16 -2.92 -0.02 4.73 16 23 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 24 N -0.92 -49.64 13.05 21.66 0.28 -49.36 16 25 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 29 C -0.12 -2.11 5.77 31.67 0.18 -1.93 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.44 7.79 -2.39 -0.02 0.42 16 34 H 0.06 0.47 7.87 -2.39 -0.02 0.45 16 35 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.58 7.87 -2.39 -0.02 0.56 16 38 H 0.11 0.48 8.09 -2.38 -0.02 0.46 16 39 H 0.42 1.78 8.35 -92.71 -0.77 1.00 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.89 7.61 -2.39 -0.02 0.87 16 44 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.34 11.48 8.16 -89.69 -0.73 10.74 16 47 H 0.10 3.15 8.14 -2.39 -0.02 3.14 16 48 H 0.07 1.99 8.08 -2.39 -0.02 1.97 16 49 H 0.40 19.40 7.90 -92.70 -0.73 18.67 16 50 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.06 1.41 7.86 -2.39 -0.02 1.39 16 Total: -1.00 -81.11 426.03 -0.85 -81.96 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: -1.31 Total: 36.55 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.20 Total: 14.31 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -6.75 Total: -116.21 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -1.02 Total: -61.87 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -81.11 -0.85 -81.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316652008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.258 kcal (2) G-P(sol) polarization free energy of solvation -81.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds