Wall clock time and date at job start Wed Apr 1 2020 00:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47517 * 2 1 4 4 O 1.42902 * 109.46922 * 120.00057 * 2 1 3 5 5 C 1.42898 * 114.00186 * 149.99499 * 4 2 1 6 6 C 1.52997 * 109.47319 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47466 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00011 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00369 * 180.02562 * 7 6 5 10 10 C 1.47027 * 125.64775 * 0.02562 * 9 7 6 11 11 C 1.54318 * 107.27329 * 181.02235 * 10 9 7 12 12 C 1.55165 * 102.94156 * 22.19670 * 11 10 9 13 13 H 1.08991 * 111.00521 * 82.60836 * 12 11 10 14 14 C 1.53004 * 111.00389 * 206.42610 * 12 11 10 15 15 N 1.46897 * 109.46774 * 293.54218 * 14 12 11 16 16 C 1.46899 * 110.99853 * 179.97438 * 15 14 12 17 17 C 1.50699 * 109.47062 * 179.97438 * 16 15 14 18 18 O 1.21290 * 120.00220 * 0.02562 * 17 16 15 19 19 N 1.34777 * 120.00127 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00354 * 180.02562 * 19 17 16 21 21 H 1.07999 * 119.99870 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00314 * 180.02562 * 20 19 17 23 23 N 1.31416 * 119.99762 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47432 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47032 * 119.99938 * 24 22 20 27 27 H 1.48497 * 109.47113 * 239.99813 * 24 22 20 28 28 C 1.47424 * 125.64902 * 179.72080 * 9 7 6 29 29 H 1.09002 * 109.46774 * 300.00670 * 1 2 3 30 30 H 1.09005 * 109.47009 * 59.99463 * 1 2 3 31 31 H 1.08997 * 109.47502 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46984 * 239.99465 * 2 1 3 33 33 H 1.08997 * 109.46833 * 60.00170 * 3 2 1 34 34 H 1.09001 * 109.46890 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46986 * 299.99733 * 3 2 1 36 36 H 1.09002 * 109.47259 * 300.00293 * 5 4 2 37 37 H 1.09001 * 109.47074 * 60.00315 * 5 4 2 38 38 H 1.09002 * 109.47153 * 300.00307 * 6 5 4 39 39 H 1.08998 * 109.47533 * 59.99936 * 6 5 4 40 40 H 1.08998 * 109.88328 * 300.44291 * 10 9 7 41 41 H 1.09005 * 109.87859 * 61.60939 * 10 9 7 42 42 H 1.08999 * 110.72200 * 140.55608 * 11 10 9 43 43 H 1.09003 * 110.72140 * 263.65710 * 11 10 9 44 44 H 1.08994 * 109.47204 * 53.54167 * 14 12 11 45 45 H 1.09001 * 109.46746 * 173.54508 * 14 12 11 46 46 H 1.00910 * 110.99766 * 56.04971 * 15 14 12 47 47 H 1.08994 * 109.47269 * 300.00091 * 16 15 14 48 48 H 1.09005 * 109.47113 * 60.00511 * 16 15 14 49 49 H 0.97003 * 119.99843 * 0.02562 * 19 17 16 50 50 H 0.97003 * 119.99727 * 179.97438 * 23 22 20 51 51 H 1.09008 * 110.36292 * 274.74187 * 28 9 7 52 52 H 1.08992 * 110.36702 * 37.06760 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3246 0.9887 6 6 3.6753 -2.0093 2.2942 7 6 5.0039 -2.6953 2.1066 8 8 5.5681 -2.6414 1.0344 9 7 5.5652 -3.3686 3.1303 10 6 4.9928 -3.5138 4.4768 11 6 5.9933 -4.3386 5.3135 12 6 7.3326 -4.1307 4.5579 13 1 7.8029 -3.1912 4.8478 14 6 8.2808 -5.3093 4.7881 15 7 8.6871 -5.3424 6.1994 16 6 9.5995 -6.4642 6.4583 17 6 9.9942 -6.4652 7.9127 18 8 9.5579 -5.6154 8.6601 19 7 10.8320 -7.4104 8.3829 20 6 11.1907 -7.4117 9.7061 21 1 10.8016 -6.6556 10.3718 22 6 12.0549 -8.3859 10.1908 23 7 12.5288 -9.3057 9.3806 24 14 12.5441 -8.3872 11.9935 25 1 11.8806 -7.2544 12.6874 26 1 12.1236 -9.6665 12.6196 27 1 14.0176 -8.2416 12.1067 28 6 6.8518 -4.0868 3.0836 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1301 1.4424 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 3.1807 -2.0708 0.1987 37 1 4.0199 -0.5876 0.7126 38 1 3.7603 -1.2634 3.0845 39 1 2.9212 -2.7464 2.5700 40 1 4.8533 -2.5316 4.9282 41 1 4.0381 -4.0367 4.4193 42 1 6.0594 -3.9494 6.3295 43 1 5.7122 -5.3917 5.3229 44 1 7.7724 -6.2395 4.5344 45 1 9.1631 -5.1940 4.1586 46 1 7.8821 -5.3839 6.8065 47 1 9.1000 -7.4022 6.2163 48 1 10.4911 -6.3573 5.8404 49 1 11.1812 -8.0898 7.7851 50 1 13.1323 -9.9856 9.7189 51 1 6.7088 -5.0966 2.6986 52 1 7.5678 -3.5429 2.4677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317316941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:12 Heat of formation + Delta-G solvation = -154.441374 kcal Electronic energy + Delta-G solvation = -28620.664333 eV Core-core repulsion = 24425.579083 eV Total energy + Delta-G solvation = -4195.085250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.25665 -40.15414 -39.47573 -38.79419 -36.62415 -35.79988 -34.35991 -33.32814 -33.00645 -31.62236 -30.46648 -28.66891 -28.12125 -26.70652 -25.29339 -24.12207 -23.55824 -22.28681 -21.37979 -20.96326 -20.11100 -19.88828 -18.51909 -18.07795 -17.55117 -17.29502 -17.05684 -16.67118 -16.40776 -16.29707 -15.96538 -15.70669 -15.49931 -15.21601 -15.00774 -14.74005 -14.52472 -14.28116 -13.91376 -13.84265 -13.69534 -13.46125 -13.34808 -13.33554 -13.26547 -13.09445 -12.95694 -12.77432 -12.68654 -12.43173 -12.39386 -12.15437 -12.11413 -12.03871 -11.69886 -11.63380 -11.60247 -11.49852 -11.05239 -10.58076 -10.33242 -10.00121 -9.72682 -9.30246 -8.45856 -5.94397 1.37548 1.43117 1.50272 1.57084 1.77113 2.06803 2.30118 2.71006 2.90846 3.21914 3.42564 3.55536 3.61628 3.76677 3.89855 3.96482 4.00352 4.12482 4.16026 4.28493 4.30334 4.33748 4.35035 4.39388 4.43506 4.50233 4.57860 4.61149 4.67593 4.74186 4.75107 4.77397 4.81332 4.89746 4.91251 4.92366 4.96380 4.98804 5.15138 5.22594 5.27521 5.32434 5.36617 5.42422 5.89715 6.11360 6.22352 6.42114 6.45987 6.61323 7.01962 7.13978 7.57871 8.12920 8.71769 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.042028 B = 0.001308 C = 0.001288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.062419 B =21393.867212 C =21735.334976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.396 6.396 5 C 0.081 3.919 6 C -0.125 4.125 7 C 0.529 3.471 8 O -0.587 6.587 9 N -0.617 5.617 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.089 4.089 13 H 0.084 0.916 14 C 0.073 3.927 15 N -0.682 5.682 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.623 6.623 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.012 4.012 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.113 3.887 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.046 0.954 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.047 0.953 45 H 0.078 0.922 46 H 0.347 0.653 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.076 0.924 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.256 13.064 -18.982 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.232 4.232 4 O -0.316 6.316 5 C 0.004 3.996 6 C -0.165 4.165 7 C 0.319 3.681 8 O -0.468 6.468 9 N -0.350 5.350 10 C -0.022 4.022 11 C -0.167 4.167 12 C -0.109 4.109 13 H 0.102 0.898 14 C -0.056 4.056 15 N -0.315 5.315 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.509 6.509 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.010 4.010 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.166 0.834 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.094 0.906 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.765 13.992 -18.980 32.089 hybrid contribution 0.459 -1.233 0.325 1.355 sum -21.306 12.759 -18.655 31.060 Atomic orbital electron populations 1.21871 0.92358 1.02858 1.03309 1.22298 0.95912 0.92706 0.87569 1.22296 1.01168 0.96400 1.03298 1.87828 1.36421 1.70340 1.37059 1.22052 0.85411 0.95550 0.96579 1.21404 0.93534 1.01716 0.99836 1.20524 0.87309 0.77929 0.82322 1.90704 1.65732 1.63166 1.27239 1.48568 1.22266 1.51619 1.12581 1.22276 0.97730 1.01678 0.80550 1.22745 0.93116 1.01280 0.99578 1.22263 0.95468 0.99585 0.93539 0.89785 1.21885 0.98506 0.96688 0.88493 1.60024 1.21157 1.44644 1.05627 1.21530 0.98960 0.94073 0.92234 1.20904 0.82489 0.82915 0.91190 1.90487 1.59164 1.40659 1.60588 1.41943 1.41903 1.27305 1.09945 1.19712 1.26844 1.13263 0.86475 0.90279 1.26017 0.96185 0.94802 1.04168 1.69680 1.33107 1.16140 1.37262 0.84885 0.78124 0.78301 0.77129 1.19719 1.19584 1.19760 1.22239 0.84872 0.97022 0.96889 0.91963 0.89523 0.92163 0.91946 0.91944 0.93235 0.90032 0.93227 0.93539 0.86538 0.86192 0.89669 0.89036 0.89183 0.89777 0.93505 0.90348 0.83399 0.91383 0.87959 0.76986 0.91340 0.90552 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.56 71.98 0.69 -0.68 16 2 C 0.07 0.91 3.34 30.59 0.10 1.02 16 3 C -0.17 -1.92 9.53 71.98 0.69 -1.24 16 4 O -0.40 -6.53 9.99 -148.98 -1.49 -8.02 16 5 C 0.08 1.35 5.04 71.98 0.36 1.72 16 6 C -0.13 -1.75 5.26 29.85 0.16 -1.59 16 7 C 0.53 10.68 7.85 87.66 0.69 11.37 16 8 O -0.59 -16.66 16.24 -3.04 -0.05 -16.71 16 9 N -0.62 -10.66 3.32 -811.34 -2.70 -13.36 16 10 C 0.10 1.17 6.48 86.73 0.56 1.73 16 11 C -0.13 -1.82 5.62 31.78 0.18 -1.64 16 12 C -0.09 -1.57 3.31 -9.32 -0.03 -1.60 16 13 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 14 C 0.07 1.48 5.19 86.30 0.45 1.93 16 15 N -0.68 -19.61 6.13 -517.94 -3.17 -22.79 16 16 C 0.06 2.09 6.17 85.56 0.53 2.62 16 17 C 0.44 20.31 7.82 87.66 0.69 21.00 16 18 O -0.62 -33.73 15.78 -3.06 -0.05 -33.78 16 19 N -0.57 -28.99 5.29 -306.99 -1.62 -30.61 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 23 N -0.92 -49.29 13.05 21.66 0.28 -49.01 16 24 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 28 C 0.11 2.04 6.38 86.93 0.55 2.59 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 0.75 7.79 -2.39 -0.02 0.73 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.62 7.87 -2.39 -0.02 0.61 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.88 8.04 -2.39 -0.02 0.87 16 37 H 0.05 0.86 7.83 -2.39 -0.02 0.84 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 43 H 0.08 1.10 8.02 -2.39 -0.02 1.08 16 44 H 0.05 0.82 8.11 -2.39 -0.02 0.81 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.35 10.21 7.65 -89.69 -0.69 9.52 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.10 3.04 8.14 -2.38 -0.02 3.02 16 49 H 0.40 19.01 7.90 -92.71 -0.73 18.27 16 50 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 51 H 0.08 1.29 8.04 -2.38 -0.02 1.27 16 52 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 Total: -1.00 -72.54 426.10 -0.39 -72.94 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.51 Total: 37.68 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.89 Total: 19.09 kcal Atomic # 7 Polarization: -108.55 SS G_CDS: -7.21 Total: -115.77 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -1.59 Total: -58.51 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -72.54 -0.39 -72.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317316941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.506 kcal (2) G-P(sol) polarization free energy of solvation -72.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds