Wall clock time and date at job start Wed Apr 1 2020 00:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47315 * 2 1 4 4 O 1.42905 * 109.47079 * 120.00244 * 2 1 3 5 5 C 1.42902 * 113.99652 * 149.99718 * 4 2 1 6 6 C 1.53001 * 109.46695 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47145 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99922 * 0.02562 * 7 6 5 9 9 N 1.34782 * 120.00113 * 179.97438 * 7 6 5 10 10 C 1.46499 * 119.99942 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.49899 * 325.07756 * 10 9 7 12 12 C 1.53115 * 109.53277 * 85.17953 * 10 9 7 13 13 C 1.53118 * 109.15622 * 177.61372 * 12 10 9 14 14 C 1.53038 * 109.28289 * 302.34374 * 13 12 10 15 15 N 1.46847 * 109.52167 * 59.17738 * 14 13 12 16 16 C 1.46896 * 111.00191 * 174.16425 * 15 14 13 17 17 C 1.50700 * 109.46942 * 294.21188 * 16 15 14 18 18 O 1.21293 * 120.00282 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00173 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99666 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00001 * 180.27893 * 20 19 17 23 23 N 1.31407 * 120.00135 * 179.72366 * 22 20 19 24 24 Si 1.86800 * 120.00194 * 359.72088 * 22 20 19 25 25 H 1.48500 * 109.47210 * 89.99937 * 24 22 20 26 26 H 1.48496 * 109.47530 * 210.00374 * 24 22 20 27 27 H 1.48501 * 109.47312 * 330.00618 * 24 22 20 28 28 C 1.46846 * 111.20043 * 298.26286 * 15 14 13 29 29 H 1.09000 * 109.46807 * 299.99940 * 1 2 3 30 30 H 1.08995 * 109.46730 * 59.99620 * 1 2 3 31 31 H 1.09002 * 109.46902 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47050 * 239.99637 * 2 1 3 33 33 H 1.09000 * 109.47252 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47073 * 299.99862 * 3 2 1 35 35 H 1.09000 * 109.47134 * 60.00260 * 3 2 1 36 36 H 1.09002 * 109.47352 * 60.00490 * 5 4 2 37 37 H 1.08990 * 109.47420 * 299.99570 * 5 4 2 38 38 H 1.09005 * 109.47221 * 59.99760 * 6 5 4 39 39 H 1.09002 * 109.47388 * 300.00230 * 6 5 4 40 40 H 0.97004 * 119.99496 * 0.02562 * 9 7 6 41 41 H 1.09001 * 109.52275 * 297.51451 * 12 10 9 42 42 H 1.08998 * 109.52411 * 57.65019 * 12 10 9 43 43 H 1.09000 * 109.50882 * 62.29017 * 13 12 10 44 44 H 1.09004 * 109.50314 * 182.36060 * 13 12 10 45 45 H 1.09006 * 109.45914 * 299.16864 * 14 13 12 46 46 H 1.08994 * 109.46274 * 179.19714 * 14 13 12 47 47 H 1.08994 * 109.47346 * 174.21494 * 16 15 14 48 48 H 1.08998 * 109.47279 * 54.21166 * 16 15 14 49 49 H 0.97000 * 120.00140 * 0.02562 * 19 17 16 50 50 H 0.97004 * 120.00486 * 179.97438 * 23 22 20 51 51 H 1.09006 * 109.46143 * 181.75446 * 28 15 14 52 52 H 1.08993 * 109.46424 * 301.72482 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 3.2660 -1.3246 0.9885 6 6 3.6761 -2.0082 2.2944 7 6 5.0047 -2.6941 2.1067 8 8 5.5684 -2.6410 1.0342 9 7 5.5671 -3.3658 3.1310 10 6 6.8585 -4.0330 2.9484 11 1 6.9247 -4.4258 1.9338 12 6 7.9909 -3.0296 3.1832 13 6 9.3358 -3.7492 3.0488 14 6 9.3915 -4.9069 4.0482 15 7 8.2885 -5.8390 3.7815 16 6 8.3907 -7.0327 4.6314 17 6 9.6247 -7.8122 4.2563 18 8 10.3476 -7.4129 3.3679 19 7 9.9251 -8.9531 4.9079 20 6 11.0480 -9.6620 4.5670 21 1 11.6916 -9.3064 3.7760 22 6 11.3545 -10.8413 5.2349 23 7 12.4278 -11.5236 4.9045 24 14 10.2409 -11.4567 6.6026 25 1 9.1972 -12.3442 6.0295 26 1 11.0462 -12.2151 7.5932 27 1 9.5937 -10.3000 7.2722 28 6 6.9859 -5.1825 3.9507 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 4.0201 -0.5875 0.7124 37 1 3.1809 -2.0707 0.1986 38 1 2.9221 -2.7453 2.5711 39 1 3.7613 -1.2618 3.0842 40 1 5.1164 -3.4079 3.9890 41 1 7.9295 -2.2313 2.4435 42 1 7.9014 -2.6068 4.1838 43 1 9.4412 -4.1376 2.0358 44 1 10.1453 -3.0494 3.2562 45 1 9.2999 -4.5164 5.0618 46 1 10.3421 -5.4301 3.9452 47 1 7.5090 -7.6572 4.4883 48 1 8.4559 -6.7301 5.6765 49 1 9.3468 -9.2727 5.6181 50 1 12.6421 -12.3467 5.3710 51 1 6.1893 -5.9060 3.7768 52 1 6.9056 -4.7908 4.9646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317956310.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:16 Heat of formation + Delta-G solvation = -149.952998 kcal Electronic energy + Delta-G solvation = -29508.736952 eV Core-core repulsion = 25313.846333 eV Total energy + Delta-G solvation = -4194.890620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.27796 -40.51992 -39.42800 -38.95767 -36.17755 -35.61964 -34.34115 -33.90335 -33.60640 -32.02458 -30.36945 -29.05805 -28.11356 -26.38262 -25.26555 -24.00884 -23.41752 -22.27774 -21.42150 -21.24902 -20.80288 -20.17154 -18.46550 -17.75261 -17.53835 -17.24522 -17.01898 -16.72553 -16.33577 -16.27471 -15.93681 -15.70947 -15.50846 -15.21858 -14.89046 -14.81758 -14.69471 -14.54571 -14.39245 -14.07287 -13.82780 -13.67983 -13.46765 -13.36013 -13.08707 -13.04971 -12.74613 -12.69431 -12.39751 -12.38291 -12.35804 -12.10921 -11.98830 -11.89350 -11.81818 -11.61265 -11.58350 -11.42274 -10.95960 -10.56229 -10.32628 -10.20924 -10.09050 -9.19521 -8.39455 -6.00279 1.31035 1.37289 1.45868 1.60640 1.87067 1.98775 2.24747 2.61975 2.91872 3.16390 3.25240 3.67135 3.77504 3.85638 3.95245 4.01792 4.04257 4.09819 4.15738 4.21103 4.29387 4.30019 4.34087 4.40731 4.49483 4.49868 4.61292 4.62280 4.71804 4.72198 4.77389 4.83287 4.90067 4.92011 4.93588 4.98997 5.00411 5.05956 5.24882 5.28349 5.33362 5.35588 5.45313 5.55581 5.91447 6.04047 6.21611 6.23997 6.55094 6.62239 6.91066 7.25676 7.42489 8.00731 8.78368 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027296 B = 0.001622 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.528259 B =17261.008716 C =17798.746731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.395 6.395 5 C 0.078 3.922 6 C -0.127 4.127 7 C 0.517 3.483 8 O -0.587 6.587 9 N -0.707 5.707 10 C 0.153 3.847 11 H 0.062 0.938 12 C -0.117 4.117 13 C -0.107 4.107 14 C 0.054 3.946 15 N -0.540 5.540 16 C 0.058 3.942 17 C 0.450 3.550 18 O -0.606 6.606 19 N -0.592 5.592 20 C -0.327 4.327 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.258 1.258 26 H -0.277 1.277 27 H -0.229 1.229 28 C 0.057 3.943 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.420 0.580 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.123 0.877 48 H 0.084 0.916 49 H 0.390 0.610 50 H 0.278 0.722 51 H 0.094 0.906 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.485 23.537 2.058 36.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.315 6.315 5 C 0.001 3.999 6 C -0.167 4.167 7 C 0.305 3.695 8 O -0.467 6.467 9 N -0.359 5.359 10 C 0.048 3.952 11 H 0.081 0.919 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.074 4.074 15 N -0.266 5.266 16 C -0.073 4.073 17 C 0.237 3.763 18 O -0.490 6.490 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.071 0.929 22 C -0.214 4.214 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.182 1.182 26 H -0.202 1.202 27 H -0.152 1.152 28 C -0.071 4.071 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.102 0.898 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.141 0.859 48 H 0.102 0.898 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.542 23.523 0.421 35.468 hybrid contribution 0.463 -0.709 1.087 1.378 sum -26.079 22.814 1.507 34.682 Atomic orbital electron populations 1.21867 0.92352 1.02836 1.03316 1.22292 0.95925 0.92745 0.87596 1.22287 1.01156 0.96343 1.03305 1.87820 1.36485 1.70316 1.36872 1.22077 0.85337 0.95518 0.96969 1.21425 0.93590 1.02004 0.99681 1.20907 0.87200 0.78111 0.83294 1.90737 1.65750 1.62179 1.27995 1.45771 1.21587 1.53277 1.15314 1.20698 0.82703 0.92021 0.99813 0.91938 1.21865 0.93606 0.97620 1.02510 1.21442 0.97769 0.96271 0.99090 1.22168 0.94947 0.92940 0.97333 1.61238 1.02865 1.06626 1.55870 1.21794 0.96398 0.92506 0.96584 1.20950 0.88949 0.82394 0.83966 1.90533 1.54226 1.70019 1.34229 1.42020 1.23943 1.22635 1.34800 1.18992 1.02219 1.05185 1.19271 0.92867 1.26120 0.98465 0.95594 1.01230 1.69811 1.27474 1.16958 1.43505 0.85354 0.78447 0.79988 0.77643 1.18238 1.20185 1.15169 1.22276 0.90907 0.95786 0.98098 0.91792 0.89652 0.92219 0.92240 0.93250 0.90189 0.91750 0.93631 0.93653 0.85797 0.85774 0.74257 0.92568 0.89839 0.93580 0.90221 0.93484 0.92239 0.85881 0.89823 0.77473 0.91223 0.88724 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 71.98 0.69 -0.69 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.17 -1.90 9.53 71.98 0.69 -1.21 16 4 O -0.39 -6.29 9.99 -148.98 -1.49 -7.77 16 5 C 0.08 1.27 5.04 71.98 0.36 1.63 16 6 C -0.13 -1.48 6.07 29.85 0.18 -1.30 16 7 C 0.52 9.50 7.80 87.66 0.68 10.19 16 8 O -0.59 -16.86 15.64 -3.02 -0.05 -16.91 16 9 N -0.71 -10.04 5.08 -442.28 -2.25 -12.29 16 10 C 0.15 3.20 2.62 45.04 0.12 3.32 16 11 H 0.06 1.82 7.58 -2.39 -0.02 1.80 16 12 C -0.12 -2.51 5.58 30.67 0.17 -2.34 16 13 C -0.11 -2.88 6.09 30.65 0.19 -2.70 16 14 C 0.05 1.62 5.11 86.33 0.44 2.06 16 15 N -0.54 -15.70 4.40 -900.94 -3.96 -19.66 16 16 C 0.06 1.69 5.45 85.56 0.47 2.16 16 17 C 0.45 20.02 7.46 87.66 0.65 20.68 16 18 O -0.61 -33.51 13.90 -3.07 -0.04 -33.55 16 19 N -0.59 -27.52 5.09 -306.98 -1.56 -29.09 16 20 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 21 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 22 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 23 N -0.94 -56.66 13.96 21.66 0.30 -56.36 16 24 Si 0.97 38.31 27.73 68.60 1.90 40.21 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 28 C 0.06 1.08 4.93 86.33 0.43 1.51 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.76 7.79 -2.38 -0.02 0.75 16 33 H 0.05 0.62 7.87 -2.39 -0.02 0.60 16 34 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.06 0.69 8.14 -2.39 -0.02 0.68 16 36 H 0.05 0.83 7.83 -2.39 -0.02 0.81 16 37 H 0.05 0.84 8.04 -2.39 -0.02 0.82 16 38 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.42 2.66 8.60 -92.71 -0.80 1.86 16 41 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 45 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.06 2.37 5.78 -2.39 -0.01 2.36 16 47 H 0.12 2.84 7.99 -2.39 -0.02 2.82 16 48 H 0.08 1.93 8.12 -2.39 -0.02 1.91 16 49 H 0.39 14.78 5.77 -92.71 -0.53 14.25 16 50 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 51 H 0.09 1.54 8.02 -2.38 -0.02 1.52 16 52 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -84.07 415.68 -1.14 -85.20 By element: Atomic # 1 Polarization: 35.09 SS G_CDS: -0.48 Total: 34.61 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.49 Total: 15.61 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -7.47 Total: -117.40 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -1.58 Total: -58.23 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Total: -84.07 -1.14 -85.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317956310.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.748 kcal (2) G-P(sol) polarization free energy of solvation -84.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds