Wall clock time and date at job start Wed Apr 1 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00339 * 2 1 4 4 C 1.52998 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47051 * 180.02562 * 4 3 2 6 6 C 1.53011 * 109.46979 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46735 * 304.99628 * 6 5 4 8 8 C 1.53000 * 109.47012 * 64.99874 * 6 5 4 9 9 C 1.50700 * 109.46933 * 185.00036 * 6 5 4 10 10 O 1.21281 * 119.99990 * 359.97438 * 9 6 5 11 11 N 1.34778 * 119.99797 * 180.02562 * 9 6 5 12 12 C 1.46496 * 119.99677 * 179.97438 * 11 9 6 13 13 H 1.08998 * 110.28152 * 327.08866 * 12 11 9 14 14 C 1.54597 * 110.30748 * 89.28447 * 12 11 9 15 15 C 1.54940 * 102.92214 * 140.86865 * 14 12 11 16 16 N 1.48527 * 103.22612 * 322.58629 * 15 14 12 17 17 C 1.46902 * 110.99964 * 159.71987 * 16 15 14 18 18 C 1.50702 * 109.47027 * 52.60122 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18 24 24 N 1.31411 * 119.99899 * 180.27617 * 23 21 20 25 25 Si 1.86800 * 120.00160 * 0.27431 * 23 21 20 26 26 H 1.48508 * 109.46685 * 89.99768 * 25 23 21 27 27 H 1.48494 * 109.47357 * 209.99847 * 25 23 21 28 28 H 1.48494 * 109.47227 * 330.00365 * 25 23 21 29 29 C 1.47896 * 105.82134 * 39.20939 * 16 15 14 30 30 H 1.08999 * 109.46880 * 300.00336 * 1 2 3 31 31 H 1.09000 * 109.46425 * 59.99946 * 1 2 3 32 32 H 1.08995 * 109.47212 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47161 * 59.99480 * 3 2 1 34 34 H 1.08998 * 109.47011 * 300.00046 * 3 2 1 35 35 H 1.09000 * 109.47190 * 59.99369 * 4 3 2 36 36 H 1.08998 * 109.46959 * 299.99843 * 4 3 2 37 37 H 1.08995 * 109.47476 * 60.00042 * 5 4 3 38 38 H 1.08998 * 109.47094 * 299.99740 * 5 4 3 39 39 H 1.09000 * 109.46861 * 60.00047 * 8 6 5 40 40 H 1.09004 * 109.46725 * 180.02562 * 8 6 5 41 41 H 1.09001 * 109.46930 * 299.99988 * 8 6 5 42 42 H 0.96993 * 119.99542 * 359.97438 * 11 9 6 43 43 H 1.09001 * 110.72499 * 259.22730 * 14 12 11 44 44 H 1.09008 * 110.72586 * 22.33508 * 14 12 11 45 45 H 1.09002 * 110.66618 * 204.14629 * 15 14 12 46 46 H 1.09002 * 110.66469 * 81.02379 * 15 14 12 47 47 H 1.09004 * 109.47131 * 292.60366 * 17 16 15 48 48 H 1.08994 * 109.47471 * 172.60116 * 17 16 15 49 49 H 0.97000 * 119.99715 * 359.97438 * 20 18 17 50 50 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.92297 * 94.01998 * 29 16 15 52 52 H 1.09002 * 109.91586 * 215.31906 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6832 2.4613 0.0000 7 1 5.9987 1.8447 0.8416 8 6 6.1434 1.8139 -1.3076 9 6 6.2957 3.8326 0.1245 10 8 5.5826 4.8103 0.2048 11 7 7.6361 3.9725 0.1455 12 6 8.2315 5.3056 0.2660 13 1 7.6045 6.0457 -0.2311 14 6 8.4235 5.6749 1.7548 15 6 9.7910 6.4033 1.7575 16 7 10.5848 5.6396 0.7613 17 6 11.7174 6.4351 0.2690 18 6 12.5136 6.9532 1.4389 19 8 12.1716 6.6856 2.5714 20 7 13.6058 7.7140 1.2268 21 6 14.3304 8.1848 2.2911 22 1 14.0263 7.9458 3.2995 23 6 15.4597 8.9643 2.0723 24 7 16.1574 9.4111 3.0924 25 14 15.9863 9.3769 0.3282 26 1 15.3352 10.6414 -0.0992 27 1 17.4615 9.5395 0.2819 28 1 15.5804 8.2781 -0.5844 29 6 9.6487 5.3144 -0.3365 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8568 0.6437 -0.8908 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1226 0.8904 38 1 3.8360 3.1237 -0.8895 39 1 5.8278 2.4306 -2.1491 40 1 7.2300 1.7274 -1.3074 41 1 5.7003 0.8221 -1.3976 42 1 8.2063 3.1906 0.0809 43 1 7.6304 6.3422 2.0921 44 1 8.4600 4.7779 2.3732 45 1 10.2543 6.3482 2.7427 46 1 9.6749 7.4406 1.4435 47 1 11.3440 7.2751 -0.3169 48 1 12.3553 5.8109 -0.3567 49 1 13.8796 7.9276 0.3211 50 1 16.9456 9.9555 2.9397 51 1 9.7152 6.0715 -1.1179 52 1 9.8839 4.3322 -0.7464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318293000.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:48 Heat of formation + Delta-G solvation = -117.384553 kcal Electronic energy + Delta-G solvation = -29289.524666 eV Core-core repulsion = 25096.046320 eV Total energy + Delta-G solvation = -4193.478346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.42949 -39.20504 -38.41891 -37.65634 -35.86115 -34.58076 -33.88294 -32.00960 -31.71216 -30.73406 -28.47105 -27.56355 -26.71220 -26.01224 -24.25408 -23.75277 -21.77497 -21.20402 -20.69049 -20.11679 -19.44407 -18.31702 -17.35004 -16.88684 -16.65269 -16.51149 -15.95911 -15.71831 -15.49400 -15.39769 -14.95087 -14.77474 -14.47712 -14.30077 -13.99394 -13.74312 -13.38376 -13.18595 -13.15586 -12.71501 -12.60766 -12.52496 -12.30864 -12.13966 -12.06177 -11.97187 -11.76747 -11.69520 -11.60200 -11.53318 -11.21465 -11.17522 -11.07323 -11.00975 -10.69943 -10.58178 -10.11385 -10.00542 -9.88121 -9.58723 -9.22287 -8.51404 -8.23572 -8.07940 -6.34226 -3.85794 2.45930 2.90784 3.00195 3.04447 3.13046 3.34334 3.68613 4.00548 4.07872 4.29057 4.40406 4.45256 4.50579 4.67897 4.72957 4.73397 4.88328 4.89074 4.90522 4.98088 5.03779 5.08811 5.14627 5.19444 5.21132 5.27593 5.33681 5.38322 5.40537 5.49033 5.53445 5.59712 5.62871 5.65648 5.71920 5.81092 5.87975 5.89398 5.95062 6.00427 6.20442 6.40498 6.59929 6.70311 7.07896 7.10837 7.33698 7.54612 8.05136 8.11326 8.56117 8.91767 9.38695 9.78642 10.78727 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043008 B = 0.001494 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.886517 B =18742.826934 C =19002.139600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.098 4.098 6 C -0.110 4.110 7 H 0.100 0.900 8 C -0.147 4.147 9 C 0.517 3.483 10 O -0.542 6.542 11 N -0.718 5.718 12 C 0.134 3.866 13 H 0.093 0.907 14 C -0.134 4.134 15 C 0.037 3.963 16 N -0.494 5.494 17 C 0.033 3.967 18 C 0.450 3.550 19 O -0.562 6.562 20 N -0.588 5.588 21 C -0.306 4.306 22 H 0.120 0.880 23 C 0.043 3.957 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 C 0.027 3.973 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.402 0.598 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.122 0.878 46 H 0.039 0.961 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.371 0.629 50 H 0.274 0.726 51 H 0.053 0.947 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.865 -16.305 -12.379 32.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.131 4.131 7 H 0.118 0.882 8 C -0.204 4.204 9 C 0.303 3.697 10 O -0.419 6.419 11 N -0.370 5.370 12 C 0.029 3.971 13 H 0.111 0.889 14 C -0.174 4.174 15 C -0.090 4.090 16 N -0.218 5.218 17 C -0.099 4.099 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.227 5.227 21 C -0.435 4.435 22 H 0.138 0.862 23 C -0.160 4.160 24 N -0.520 5.520 25 Si 0.705 3.295 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.102 4.102 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.237 0.763 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.140 0.860 46 H 0.057 0.943 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.071 0.929 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.064 -16.269 -11.247 31.928 hybrid contribution 0.472 1.099 -1.821 2.179 sum -24.593 -15.170 -13.068 31.713 Atomic orbital electron populations 1.22740 0.80974 1.02757 1.00042 1.87860 1.19777 1.28283 1.95458 1.22562 0.94226 0.84491 1.00398 1.21585 0.92969 0.97603 1.03573 1.21293 0.92376 0.96022 1.03870 1.21300 0.96787 0.94176 1.00848 0.88227 1.21849 1.01569 1.01291 0.95724 1.20646 0.82217 0.91298 0.75508 1.90699 1.61007 1.40753 1.49415 1.46138 1.06705 1.09488 1.74660 1.21858 0.93506 0.84618 0.97095 0.88872 1.22989 0.97719 1.01354 0.95307 1.23509 0.91124 0.94252 1.00123 1.64641 1.06566 1.40894 1.09729 1.22149 0.94225 0.96603 0.96919 1.19590 0.83438 0.83345 0.90006 1.90484 1.69442 1.60715 1.23822 1.42195 1.25283 1.46908 1.08296 1.19435 1.06306 1.28499 0.89216 0.86214 1.25037 0.96215 0.97071 0.97719 1.69621 1.17622 1.34795 1.29932 0.86680 0.79377 0.79158 0.84235 1.19639 1.20121 1.19470 1.23191 0.90833 1.02015 0.94124 0.94032 0.94070 0.89625 0.93170 0.93239 0.90729 0.90951 0.90776 0.91046 0.92016 0.91974 0.91032 0.76282 0.90885 0.90448 0.86046 0.94255 0.93097 0.89030 0.79668 0.91571 0.92869 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.66 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.12 -0.75 5.34 -26.73 -0.14 -0.90 16 5 C -0.10 -0.71 4.03 -26.73 -0.11 -0.81 16 6 C -0.11 -0.76 2.72 -91.77 -0.25 -1.01 16 7 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 8 C -0.15 -0.77 8.84 37.16 0.33 -0.45 16 9 C 0.52 5.31 7.15 -10.98 -0.08 5.23 16 10 O -0.54 -7.69 15.57 5.56 0.09 -7.61 16 11 N -0.72 -6.69 4.95 -52.49 -0.26 -6.95 16 12 C 0.13 1.54 3.34 -66.57 -0.22 1.31 16 13 H 0.09 1.16 7.56 -51.93 -0.39 0.76 16 14 C -0.13 -1.78 6.78 -24.87 -0.17 -1.95 16 15 C 0.04 0.60 5.30 -1.90 -0.01 0.59 16 16 N -0.49 -7.58 5.26 -231.89 -1.22 -8.80 16 17 C 0.03 0.54 5.52 -4.97 -0.03 0.51 16 18 C 0.45 9.96 7.49 -10.98 -0.08 9.88 16 19 O -0.56 -14.43 13.10 5.55 0.07 -14.36 16 20 N -0.59 -13.74 5.09 -10.96 -0.06 -13.80 16 21 C -0.31 -8.53 10.16 -14.93 -0.15 -8.68 16 22 H 0.12 3.81 7.39 -52.49 -0.39 3.43 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.47 13.96 55.50 0.77 -24.69 16 25 Si 0.88 19.12 27.74 -169.99 -4.72 14.40 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.27 -5.32 6.51 56.52 0.37 -4.95 16 29 C 0.03 0.31 6.47 -2.76 -0.02 0.29 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.44 6.57 -51.93 -0.34 0.10 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.63 7.95 -51.93 -0.41 0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.06 0.28 7.56 -51.93 -0.39 -0.12 16 41 H 0.07 0.31 6.57 -51.93 -0.34 -0.03 16 42 H 0.40 2.87 7.77 -40.82 -0.32 2.55 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.03 8.06 -51.92 -0.42 0.61 16 45 H 0.12 2.39 5.97 -51.93 -0.31 2.08 16 46 H 0.04 0.64 8.02 -51.93 -0.42 0.23 16 47 H 0.05 0.73 7.81 -51.93 -0.41 0.33 16 48 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.37 7.61 5.76 -40.82 -0.24 7.37 16 50 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.05 0.57 7.57 -51.93 -0.39 0.17 16 52 H 0.08 0.80 7.65 -51.93 -0.40 0.40 16 LS Contribution 412.76 15.07 6.22 6.22 Total: -1.00 -34.04 412.76 -8.15 -42.19 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -8.98 Total: 10.07 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.31 Total: 7.00 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.76 Total: -54.24 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.22 Total: -25.63 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.72 Total: 14.40 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.04 -8.15 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318293000.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.197 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds