Wall clock time and date at job start Wed Apr 1 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42898 * 114.00339 * 2 1 4 4 C 1.52998 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47051 * 180.02562 * 4 3 2 6 6 C 1.53011 * 109.46979 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.46735 * 304.99628 * 6 5 4 8 8 C 1.53000 * 109.47012 * 64.99874 * 6 5 4 9 9 C 1.50700 * 109.46933 * 185.00036 * 6 5 4 10 10 O 1.21281 * 119.99990 * 359.97438 * 9 6 5 11 11 N 1.34778 * 119.99797 * 180.02562 * 9 6 5 12 12 C 1.46496 * 119.99677 * 179.97438 * 11 9 6 13 13 H 1.08998 * 110.28152 * 327.08866 * 12 11 9 14 14 C 1.54597 * 110.30748 * 89.28447 * 12 11 9 15 15 C 1.54940 * 102.92214 * 140.86865 * 14 12 11 16 16 N 1.48527 * 103.22612 * 322.58629 * 15 14 12 17 17 C 1.46902 * 110.99964 * 159.71987 * 16 15 14 18 18 C 1.50702 * 109.47027 * 52.60122 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34783 * 120.00004 * 180.02562 * 18 17 16 21 21 C 1.37092 * 119.99804 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00499 * 0.02562 * 21 20 18 23 23 C 1.38956 * 119.99671 * 179.72159 * 21 20 18 24 24 N 1.31411 * 119.99899 * 180.27617 * 23 21 20 25 25 Si 1.86800 * 120.00160 * 0.27431 * 23 21 20 26 26 H 1.48508 * 109.46685 * 89.99768 * 25 23 21 27 27 H 1.48494 * 109.47357 * 209.99847 * 25 23 21 28 28 H 1.48494 * 109.47227 * 330.00365 * 25 23 21 29 29 C 1.47896 * 105.82134 * 39.20939 * 16 15 14 30 30 H 1.08999 * 109.46880 * 300.00336 * 1 2 3 31 31 H 1.09000 * 109.46425 * 59.99946 * 1 2 3 32 32 H 1.08995 * 109.47212 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47161 * 59.99480 * 3 2 1 34 34 H 1.08998 * 109.47011 * 300.00046 * 3 2 1 35 35 H 1.09000 * 109.47190 * 59.99369 * 4 3 2 36 36 H 1.08998 * 109.46959 * 299.99843 * 4 3 2 37 37 H 1.08995 * 109.47476 * 60.00042 * 5 4 3 38 38 H 1.08998 * 109.47094 * 299.99740 * 5 4 3 39 39 H 1.09000 * 109.46861 * 60.00047 * 8 6 5 40 40 H 1.09004 * 109.46725 * 180.02562 * 8 6 5 41 41 H 1.09001 * 109.46930 * 299.99988 * 8 6 5 42 42 H 0.96993 * 119.99542 * 359.97438 * 11 9 6 43 43 H 1.09001 * 110.72499 * 259.22730 * 14 12 11 44 44 H 1.09008 * 110.72586 * 22.33508 * 14 12 11 45 45 H 1.09002 * 110.66618 * 204.14629 * 15 14 12 46 46 H 1.09002 * 110.66469 * 81.02379 * 15 14 12 47 47 H 1.09004 * 109.47131 * 292.60366 * 17 16 15 48 48 H 1.08994 * 109.47471 * 172.60116 * 17 16 15 49 49 H 0.97000 * 119.99715 * 359.97438 * 20 18 17 50 50 H 0.97005 * 120.00019 * 180.02562 * 24 23 21 51 51 H 1.09003 * 109.92297 * 94.01998 * 29 16 15 52 52 H 1.09002 * 109.91586 * 215.31906 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6832 2.4613 0.0000 7 1 5.9987 1.8447 0.8416 8 6 6.1434 1.8139 -1.3076 9 6 6.2957 3.8326 0.1245 10 8 5.5826 4.8103 0.2048 11 7 7.6361 3.9725 0.1455 12 6 8.2315 5.3056 0.2660 13 1 7.6045 6.0457 -0.2311 14 6 8.4235 5.6749 1.7548 15 6 9.7910 6.4033 1.7575 16 7 10.5848 5.6396 0.7613 17 6 11.7174 6.4351 0.2690 18 6 12.5136 6.9532 1.4389 19 8 12.1716 6.6856 2.5714 20 7 13.6058 7.7140 1.2268 21 6 14.3304 8.1848 2.2911 22 1 14.0263 7.9458 3.2995 23 6 15.4597 8.9643 2.0723 24 7 16.1574 9.4111 3.0924 25 14 15.9863 9.3769 0.3282 26 1 15.3352 10.6414 -0.0992 27 1 17.4615 9.5395 0.2819 28 1 15.5804 8.2781 -0.5844 29 6 9.6487 5.3144 -0.3365 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8464 0.8899 34 1 1.6887 1.8463 -0.8900 35 1 3.8568 0.6437 -0.8908 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1226 0.8904 38 1 3.8360 3.1237 -0.8895 39 1 5.8278 2.4306 -2.1491 40 1 7.2300 1.7274 -1.3074 41 1 5.7003 0.8221 -1.3976 42 1 8.2063 3.1906 0.0809 43 1 7.6304 6.3422 2.0921 44 1 8.4600 4.7779 2.3732 45 1 10.2543 6.3482 2.7427 46 1 9.6749 7.4406 1.4435 47 1 11.3440 7.2751 -0.3169 48 1 12.3553 5.8109 -0.3567 49 1 13.8796 7.9276 0.3211 50 1 16.9456 9.9555 2.9397 51 1 9.7152 6.0715 -1.1179 52 1 9.8839 4.3322 -0.7464 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318293000.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:47 Heat of formation + Delta-G solvation = -144.962320 kcal Electronic energy + Delta-G solvation = -29290.720528 eV Core-core repulsion = 25096.046320 eV Total energy + Delta-G solvation = -4194.674208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34902 -40.58247 -39.17724 -38.84875 -36.50554 -36.08231 -35.33555 -33.78454 -32.72479 -31.70818 -29.52943 -28.27173 -27.93714 -26.51181 -25.83171 -24.55939 -22.57885 -22.31792 -21.61030 -21.30690 -20.80644 -20.18431 -18.17548 -17.67015 -17.56729 -17.25311 -17.12994 -16.91053 -16.57764 -16.33809 -16.13428 -15.94155 -15.54926 -15.16680 -15.10993 -14.91154 -14.62944 -14.44079 -14.21823 -14.02097 -13.73009 -13.39343 -13.24563 -13.15457 -13.08617 -12.76549 -12.68506 -12.65945 -12.57537 -12.40448 -12.28788 -12.26974 -12.06048 -11.97956 -11.82532 -11.71246 -11.54874 -11.47440 -10.72006 -10.61363 -10.37226 -10.24677 -9.97005 -9.36527 -8.41177 -6.01992 1.30432 1.35588 1.44747 1.66521 1.94731 2.15244 2.23204 2.68216 2.84679 3.15184 3.18180 3.54508 3.70900 3.76857 3.91090 3.94144 4.10320 4.16290 4.19539 4.26853 4.29900 4.39524 4.40298 4.43246 4.51342 4.53488 4.53683 4.55050 4.66031 4.70670 4.74212 4.80330 4.85185 4.88924 4.91419 5.03461 5.05637 5.09253 5.20084 5.23494 5.37862 5.44758 5.52767 5.54976 5.83809 5.90666 6.04211 6.22270 6.58923 6.59914 6.88847 7.28837 7.39360 7.96756 8.76410 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043008 B = 0.001494 C = 0.001473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.886517 B =18742.826934 C =19002.139600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.056 3.944 4 C -0.111 4.111 5 C -0.093 4.093 6 C -0.103 4.103 7 H 0.117 0.883 8 C -0.143 4.143 9 C 0.515 3.485 10 O -0.585 6.585 11 N -0.707 5.707 12 C 0.143 3.857 13 H 0.086 0.914 14 C -0.126 4.126 15 C 0.040 3.960 16 N -0.509 5.509 17 C 0.043 3.957 18 C 0.448 3.552 19 O -0.605 6.605 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.963 3.037 26 H -0.259 1.259 27 H -0.276 1.276 28 H -0.229 1.229 29 C 0.034 3.966 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.416 0.584 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.032 0.968 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.072 0.928 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.320 -17.931 -16.632 35.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.149 4.149 5 C -0.131 4.131 6 C -0.124 4.124 7 H 0.135 0.865 8 C -0.201 4.201 9 C 0.303 3.697 10 O -0.465 6.465 11 N -0.359 5.359 12 C 0.037 3.963 13 H 0.104 0.896 14 C -0.165 4.165 15 C -0.088 4.088 16 N -0.234 5.234 17 C -0.088 4.088 18 C 0.236 3.764 19 O -0.490 6.490 20 N -0.232 5.232 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.575 5.575 25 Si 0.783 3.217 26 H -0.183 1.183 27 H -0.201 1.201 28 H -0.152 1.152 29 C -0.094 4.094 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.254 0.746 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.050 0.950 47 H 0.099 0.901 48 H 0.143 0.857 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.090 0.910 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -25.531 -17.945 -15.522 34.854 hybrid contribution 0.500 1.562 -0.337 1.674 sum -25.031 -16.383 -15.859 33.860 Atomic orbital electron populations 1.22911 0.79740 1.03773 1.00705 1.87818 1.21286 1.28952 1.95594 1.22630 0.94628 0.84207 1.00599 1.21505 0.92555 0.96839 1.03991 1.21214 0.92886 0.96329 1.02639 1.21323 0.96127 0.92341 1.02651 0.86549 1.21856 1.02550 1.01540 0.94121 1.21255 0.82126 0.92067 0.74283 1.90687 1.61976 1.42459 1.51400 1.46024 1.06706 1.09231 1.73967 1.21640 0.93905 0.85576 0.95204 0.89555 1.22868 0.95811 1.00766 0.97103 1.23243 0.92509 0.94550 0.98503 1.64618 1.07212 1.40340 1.11206 1.22133 0.94216 0.98284 0.94164 1.20864 0.82703 0.81506 0.91346 1.90501 1.70279 1.61633 1.26559 1.42018 1.25590 1.47626 1.07924 1.19005 1.08055 1.30406 0.88271 0.92629 1.26099 0.95350 0.95940 1.03844 1.69806 1.18445 1.35804 1.33493 0.85384 0.78654 0.80364 0.77252 1.18316 1.20076 1.15220 1.23261 0.89219 1.03981 0.92966 0.93516 0.93272 0.88519 0.93271 0.92810 0.89898 0.90820 0.92497 0.91878 0.92672 0.90579 0.89697 0.74619 0.91384 0.90707 0.90460 0.94964 0.90098 0.85668 0.77479 0.91172 0.90979 0.87211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.50 10.70 -148.98 -1.59 -8.09 16 3 C 0.06 0.72 5.94 71.98 0.43 1.14 16 4 C -0.11 -1.24 5.34 30.59 0.16 -1.07 16 5 C -0.09 -1.25 4.03 30.60 0.12 -1.12 16 6 C -0.10 -1.21 2.72 -11.54 -0.03 -1.25 16 7 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 8 C -0.14 -1.07 8.84 71.98 0.64 -0.43 16 9 C 0.51 9.75 7.15 87.66 0.63 10.37 16 10 O -0.59 -16.35 15.57 -3.03 -0.05 -16.40 16 11 N -0.71 -11.39 4.95 -438.38 -2.17 -13.56 16 12 C 0.14 2.95 3.34 45.87 0.15 3.11 16 13 H 0.09 1.98 7.56 -2.39 -0.02 1.97 16 14 C -0.13 -3.30 6.78 31.80 0.22 -3.09 16 15 C 0.04 1.30 5.30 86.65 0.46 1.76 16 16 N -0.51 -14.51 5.26 -887.57 -4.67 -19.18 16 17 C 0.04 1.27 5.52 85.56 0.47 1.74 16 18 C 0.45 19.75 7.49 87.66 0.66 20.40 16 19 O -0.61 -32.56 13.10 -3.07 -0.04 -32.60 16 20 N -0.59 -27.33 5.09 -306.97 -1.56 -28.89 16 21 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 22 H 0.06 3.85 7.39 -2.91 -0.02 3.83 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 24 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 25 Si 0.96 38.27 27.74 68.60 1.90 40.18 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 28 H -0.23 -7.55 6.51 99.48 0.65 -6.91 16 29 C 0.03 0.63 6.47 86.45 0.56 1.19 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.79 6.57 -2.39 -0.02 0.78 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.37 7.56 -2.39 -0.02 0.36 16 41 H 0.08 0.45 6.57 -2.39 -0.02 0.43 16 42 H 0.42 4.45 7.77 -92.71 -0.72 3.73 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.98 8.06 -2.38 -0.02 1.96 16 45 H 0.08 3.23 5.97 -2.39 -0.01 3.22 16 46 H 0.03 1.07 8.02 -2.39 -0.02 1.05 16 47 H 0.08 1.96 7.81 -2.38 -0.02 1.94 16 48 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 49 H 0.39 14.84 5.76 -92.71 -0.53 14.30 16 50 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 51 H 0.07 1.17 7.57 -2.39 -0.02 1.15 16 52 H 0.11 1.55 7.65 -2.39 -0.02 1.53 16 Total: -1.00 -81.33 412.76 -1.24 -82.56 By element: Atomic # 1 Polarization: 36.51 SS G_CDS: -0.39 Total: 36.11 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 7.03 Total: 15.76 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -8.10 Total: -117.53 kcal Atomic # 8 Polarization: -55.41 SS G_CDS: -1.68 Total: -57.09 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 1.90 Total: 40.18 kcal Total: -81.33 -1.24 -82.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318293000.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.398 kcal (2) G-P(sol) polarization free energy of solvation -81.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds