Wall clock time and date at job start Wed Apr 1 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00139 * 2 1 4 4 C 1.52997 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47196 * 55.00329 * 6 5 4 8 8 C 1.53000 * 109.47341 * 295.00521 * 6 5 4 9 9 C 1.50701 * 109.47011 * 175.00045 * 6 5 4 10 10 O 1.21280 * 119.99974 * 0.02562 * 9 6 5 11 11 N 1.34771 * 119.99782 * 179.97438 * 9 6 5 12 12 C 1.46503 * 120.00040 * 180.02562 * 11 9 6 13 13 H 1.09000 * 110.27258 * 327.08880 * 12 11 9 14 14 C 1.54592 * 110.30879 * 89.28537 * 12 11 9 15 15 C 1.54929 * 102.92351 * 96.96064 * 14 12 11 16 16 N 1.48534 * 103.22875 * 37.41594 * 15 14 12 17 17 C 1.46900 * 111.00211 * 200.28226 * 16 15 14 18 18 C 1.50704 * 109.47129 * 307.39184 * 17 16 15 19 19 O 1.21300 * 119.99699 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00175 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00043 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00294 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99814 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00452 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99586 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47318 * 60.00204 * 25 23 21 27 27 H 1.48504 * 109.46827 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47277 * 299.99805 * 25 23 21 29 29 C 1.47904 * 105.81784 * 320.79401 * 16 15 14 30 30 H 1.08999 * 109.47074 * 299.99302 * 1 2 3 31 31 H 1.08991 * 109.47312 * 60.00333 * 1 2 3 32 32 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47098 * 59.99755 * 3 2 1 34 34 H 1.09004 * 109.47055 * 300.00254 * 3 2 1 35 35 H 1.09001 * 109.46832 * 60.00112 * 4 3 2 36 36 H 1.08993 * 109.47194 * 299.99633 * 4 3 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 5 4 3 38 38 H 1.09001 * 109.46998 * 59.99868 * 5 4 3 39 39 H 1.09004 * 109.47031 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.46818 * 300.00038 * 8 6 5 41 41 H 1.08994 * 109.47281 * 59.99487 * 8 6 5 42 42 H 0.97002 * 120.00454 * 0.02562 * 11 9 6 43 43 H 1.09007 * 110.72442 * 215.31919 * 14 12 11 44 44 H 1.09001 * 110.72600 * 338.60072 * 14 12 11 45 45 H 1.09003 * 110.67049 * 278.97758 * 15 14 12 46 46 H 1.09010 * 110.81214 * 155.91596 * 15 14 12 47 47 H 1.09001 * 109.47371 * 67.39173 * 17 16 15 48 48 H 1.08994 * 109.47030 * 187.39208 * 17 16 15 49 49 H 0.96998 * 120.00480 * 359.97438 * 20 18 17 50 50 H 0.96994 * 120.00416 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.91743 * 265.97762 * 29 16 15 52 52 H 1.08994 * 110.08373 * 144.77697 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6830 2.4616 -0.0026 7 1 5.9979 1.8453 -0.8447 8 6 6.1444 1.8136 1.3044 9 6 6.2954 3.8329 -0.1270 10 8 5.5821 4.8106 -0.2064 11 7 7.6356 3.9729 -0.1491 12 6 8.2310 5.3060 -0.2696 13 1 7.5961 5.9496 -0.8785 14 6 8.4432 5.9273 1.1300 15 6 9.9303 5.6108 1.4278 16 7 10.5841 5.7735 0.1040 17 6 11.8725 5.0691 0.0630 18 6 12.7173 5.4984 1.2348 19 8 12.2881 6.3109 2.0265 20 7 13.9497 4.9795 1.4030 21 6 14.7180 5.3697 2.4694 22 1 14.3359 6.0931 3.1743 23 6 15.9888 4.8351 2.6425 24 7 16.4541 3.9552 1.7845 25 14 17.0359 5.3673 4.0951 26 1 16.3322 5.0365 5.3602 27 1 18.3387 4.6556 4.0533 28 1 17.2692 6.8322 4.0268 29 6 9.6396 5.2089 -0.8842 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8357 3.1230 -0.8913 38 1 3.8365 3.1235 0.8887 39 1 7.2311 1.7279 1.3036 40 1 5.8294 2.4299 2.1464 41 1 5.7014 0.8218 1.3944 42 1 8.2061 3.1909 -0.0853 43 1 8.2759 7.0041 1.1035 44 1 7.7932 5.4529 1.8653 45 1 10.0413 4.5882 1.7886 46 1 10.3401 6.3183 2.1487 47 1 11.7006 3.9939 0.1136 48 1 12.3895 5.3110 -0.8656 49 1 14.2929 4.3295 0.7702 50 1 17.3411 3.5818 1.9056 51 1 9.8877 4.1659 -1.0811 52 1 9.6807 5.7814 -1.8108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318293004.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:51 Heat of formation + Delta-G solvation = -124.097142 kcal Electronic energy + Delta-G solvation = -29524.156030 eV Core-core repulsion = 25330.386604 eV Total energy + Delta-G solvation = -4193.769426 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44011 -39.09070 -38.38836 -37.53072 -35.82662 -34.47169 -33.81170 -31.94077 -31.34979 -30.59077 -28.45406 -27.52736 -26.56106 -25.97850 -24.35445 -23.82926 -21.83230 -21.25040 -20.57839 -19.94677 -19.24040 -17.90007 -17.35309 -16.89666 -16.62277 -16.54640 -15.88844 -15.59795 -15.49227 -15.28887 -14.87767 -14.62556 -14.51682 -14.14432 -13.92767 -13.76385 -13.56012 -13.32993 -13.08065 -12.67296 -12.56984 -12.27518 -12.18740 -11.99459 -11.91923 -11.82005 -11.67382 -11.56842 -11.55818 -11.25179 -11.18556 -11.09796 -10.98591 -10.86585 -10.76143 -10.45333 -10.24946 -10.09538 -9.85808 -9.52241 -9.17658 -8.42459 -8.05558 -7.93569 -6.45468 -3.86487 2.47461 2.91941 3.17542 3.23804 3.28013 3.35924 3.84975 4.05919 4.25899 4.33511 4.44559 4.48609 4.59795 4.70743 4.75712 4.79513 4.90177 4.92265 4.99820 5.05136 5.07289 5.14637 5.17424 5.22100 5.23287 5.29542 5.37751 5.42989 5.52215 5.55556 5.56998 5.66407 5.70590 5.72736 5.87298 5.91234 5.97184 5.98063 6.03251 6.18995 6.25202 6.42980 6.66934 6.72244 7.17258 7.22574 7.33649 7.51660 8.01806 8.06371 8.57369 9.14010 9.49356 10.01024 10.72014 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.001643 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.631404 B =17040.016985 C =17701.870347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.110 4.110 7 H 0.098 0.902 8 C -0.148 4.148 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.722 5.722 12 C 0.132 3.868 13 H 0.097 0.903 14 C -0.133 4.133 15 C 0.038 3.962 16 N -0.493 5.493 17 C 0.037 3.963 18 C 0.441 3.559 19 O -0.580 6.580 20 N -0.560 5.560 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.024 3.976 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.273 1.273 29 C 0.028 3.972 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.120 0.880 47 H 0.048 0.952 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.048 0.952 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.806 -8.737 -6.737 27.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.158 4.158 5 C -0.135 4.135 6 C -0.131 4.131 7 H 0.116 0.884 8 C -0.205 4.205 9 C 0.304 3.696 10 O -0.417 6.417 11 N -0.374 5.374 12 C 0.028 3.972 13 H 0.115 0.885 14 C -0.172 4.172 15 C -0.089 4.089 16 N -0.218 5.218 17 C -0.095 4.095 18 C 0.226 3.774 19 O -0.465 6.465 20 N -0.197 5.197 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.198 1.198 29 C -0.100 4.100 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.233 0.767 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.052 0.948 46 H 0.138 0.862 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.066 0.934 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.163 -7.194 -6.385 26.939 hybrid contribution 0.876 -1.309 0.369 1.617 sum -24.288 -8.503 -6.016 26.427 Atomic orbital electron populations 1.22739 0.80985 1.02756 1.00031 1.87861 1.19768 1.28285 1.95455 1.22562 0.94219 0.84486 1.00389 1.21588 0.92972 0.97613 1.03581 1.21292 0.92347 0.96017 1.03870 1.21300 0.96810 0.94151 1.00827 0.88379 1.21856 1.01615 1.01315 0.95755 1.20634 0.82162 0.91295 0.75506 1.90699 1.60957 1.40753 1.49261 1.46245 1.06790 1.09532 1.74815 1.21851 0.93916 0.83704 0.97775 0.88451 1.22967 0.97080 1.01641 0.95545 1.23509 0.91564 1.01117 0.92669 1.64650 1.01309 1.51375 1.04461 1.22107 0.91525 0.96005 0.99839 1.19689 0.83543 0.86096 0.88051 1.90445 1.72063 1.36836 1.47148 1.41835 1.13046 1.39077 1.25692 1.19659 0.96130 1.23526 1.03727 0.87915 1.25261 0.97423 0.96326 0.98789 1.69597 1.19097 1.29117 1.36399 0.85917 0.78550 0.78821 0.80931 1.19919 1.20960 1.19839 1.23226 0.90763 0.98775 0.97282 0.94042 0.94068 0.89631 0.93183 0.93223 0.91012 0.90674 0.90832 0.90964 0.92000 0.91881 0.90993 0.76684 0.90032 0.91157 0.94790 0.86241 0.93451 0.89147 0.77461 0.91777 0.93379 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.40 10.70 -35.23 -0.38 -3.78 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.12 -0.80 5.34 -26.73 -0.14 -0.95 16 5 C -0.10 -0.74 4.03 -26.73 -0.11 -0.85 16 6 C -0.11 -0.82 2.72 -91.77 -0.25 -1.07 16 7 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 8 C -0.15 -0.98 8.85 37.16 0.33 -0.65 16 9 C 0.52 5.56 7.15 -10.99 -0.08 5.48 16 10 O -0.54 -7.81 15.57 5.56 0.09 -7.72 16 11 N -0.72 -7.17 4.95 -52.49 -0.26 -7.43 16 12 C 0.13 1.58 3.34 -66.57 -0.22 1.35 16 13 H 0.10 1.24 7.56 -51.93 -0.39 0.84 16 14 C -0.13 -1.81 6.78 -24.88 -0.17 -1.98 16 15 C 0.04 0.63 5.31 -1.90 -0.01 0.62 16 16 N -0.49 -7.98 5.26 -231.89 -1.22 -9.20 16 17 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 18 C 0.44 10.10 7.49 -10.99 -0.08 10.02 16 19 O -0.58 -15.06 13.09 5.54 0.07 -14.98 16 20 N -0.56 -13.87 5.29 -10.96 -0.06 -13.92 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 23 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.09 13.05 55.50 0.72 -23.36 16 25 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 C 0.03 0.34 6.47 -2.75 -0.02 0.33 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.49 6.57 -51.93 -0.34 0.15 16 37 H 0.07 0.63 7.96 -51.93 -0.41 0.21 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.39 7.56 -51.93 -0.39 -0.01 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.40 6.57 -51.93 -0.34 0.06 16 42 H 0.40 3.20 7.75 -40.82 -0.32 2.89 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.94 8.05 -51.93 -0.42 0.52 16 45 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 46 H 0.12 2.40 5.96 -51.92 -0.31 2.09 16 47 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 48 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 49 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 50 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 51 H 0.05 0.51 7.06 -51.93 -0.37 0.15 16 52 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 415.84 15.07 6.27 6.27 Total: -1.00 -32.49 415.84 -8.49 -40.99 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -9.02 Total: 10.42 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 0.31 Total: 7.00 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.81 Total: -53.92 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -0.22 Total: -26.49 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.49 -8.49 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318293004.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.109 kcal (2) G-P(sol) polarization free energy of solvation -32.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds