Wall clock time and date at job start Wed Apr 1 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00139 * 2 1 4 4 C 1.52997 * 109.47269 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47127 * 180.02562 * 5 4 3 7 7 H 1.09002 * 109.47196 * 55.00329 * 6 5 4 8 8 C 1.53000 * 109.47341 * 295.00521 * 6 5 4 9 9 C 1.50701 * 109.47011 * 175.00045 * 6 5 4 10 10 O 1.21280 * 119.99974 * 0.02562 * 9 6 5 11 11 N 1.34771 * 119.99782 * 179.97438 * 9 6 5 12 12 C 1.46503 * 120.00040 * 180.02562 * 11 9 6 13 13 H 1.09000 * 110.27258 * 327.08880 * 12 11 9 14 14 C 1.54592 * 110.30879 * 89.28537 * 12 11 9 15 15 C 1.54929 * 102.92351 * 96.96064 * 14 12 11 16 16 N 1.48534 * 103.22875 * 37.41594 * 15 14 12 17 17 C 1.46900 * 111.00211 * 200.28226 * 16 15 14 18 18 C 1.50704 * 109.47129 * 307.39184 * 17 16 15 19 19 O 1.21300 * 119.99699 * 0.02562 * 18 17 16 20 20 N 1.34768 * 120.00175 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00043 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00294 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99814 * 180.02562 * 21 20 18 24 24 N 1.31409 * 120.00452 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99586 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47318 * 60.00204 * 25 23 21 27 27 H 1.48504 * 109.46827 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47277 * 299.99805 * 25 23 21 29 29 C 1.47904 * 105.81784 * 320.79401 * 16 15 14 30 30 H 1.08999 * 109.47074 * 299.99302 * 1 2 3 31 31 H 1.08991 * 109.47312 * 60.00333 * 1 2 3 32 32 H 1.09004 * 109.46865 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47098 * 59.99755 * 3 2 1 34 34 H 1.09004 * 109.47055 * 300.00254 * 3 2 1 35 35 H 1.09001 * 109.46832 * 60.00112 * 4 3 2 36 36 H 1.08993 * 109.47194 * 299.99633 * 4 3 2 37 37 H 1.09001 * 109.46801 * 300.00272 * 5 4 3 38 38 H 1.09001 * 109.46998 * 59.99868 * 5 4 3 39 39 H 1.09004 * 109.47031 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.46818 * 300.00038 * 8 6 5 41 41 H 1.08994 * 109.47281 * 59.99487 * 8 6 5 42 42 H 0.97002 * 120.00454 * 0.02562 * 11 9 6 43 43 H 1.09007 * 110.72442 * 215.31919 * 14 12 11 44 44 H 1.09001 * 110.72600 * 338.60072 * 14 12 11 45 45 H 1.09003 * 110.67049 * 278.97758 * 15 14 12 46 46 H 1.09010 * 110.81214 * 155.91596 * 15 14 12 47 47 H 1.09001 * 109.47371 * 67.39173 * 17 16 15 48 48 H 1.08994 * 109.47030 * 187.39208 * 17 16 15 49 49 H 0.96998 * 120.00480 * 359.97438 * 20 18 17 50 50 H 0.96994 * 120.00416 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.91743 * 265.97762 * 29 16 15 52 52 H 1.08994 * 110.08373 * 144.77697 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 -0.0013 6 6 5.6830 2.4616 -0.0026 7 1 5.9979 1.8453 -0.8447 8 6 6.1444 1.8136 1.3044 9 6 6.2954 3.8329 -0.1270 10 8 5.5821 4.8106 -0.2064 11 7 7.6356 3.9729 -0.1491 12 6 8.2310 5.3060 -0.2696 13 1 7.5961 5.9496 -0.8785 14 6 8.4432 5.9273 1.1300 15 6 9.9303 5.6108 1.4278 16 7 10.5841 5.7735 0.1040 17 6 11.8725 5.0691 0.0630 18 6 12.7173 5.4984 1.2348 19 8 12.2881 6.3109 2.0265 20 7 13.9497 4.9795 1.4030 21 6 14.7180 5.3697 2.4694 22 1 14.3359 6.0931 3.1743 23 6 15.9888 4.8351 2.6425 24 7 16.4541 3.9552 1.7845 25 14 17.0359 5.3673 4.0951 26 1 16.3322 5.0365 5.3602 27 1 18.3387 4.6556 4.0533 28 1 17.2692 6.8322 4.0268 29 6 9.6396 5.2089 -0.8842 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8567 0.6438 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8357 3.1230 -0.8913 38 1 3.8365 3.1235 0.8887 39 1 7.2311 1.7279 1.3036 40 1 5.8294 2.4299 2.1464 41 1 5.7014 0.8218 1.3944 42 1 8.2061 3.1909 -0.0853 43 1 8.2759 7.0041 1.1035 44 1 7.7932 5.4529 1.8653 45 1 10.0413 4.5882 1.7886 46 1 10.3401 6.3183 2.1487 47 1 11.7006 3.9939 0.1136 48 1 12.3895 5.3110 -0.8656 49 1 14.2929 4.3295 0.7702 50 1 17.3411 3.5818 1.9056 51 1 9.8877 4.1659 -1.0811 52 1 9.6807 5.7814 -1.8108 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318293004.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:50 Heat of formation + Delta-G solvation = -148.853321 kcal Electronic energy + Delta-G solvation = -29525.229538 eV Core-core repulsion = 25330.386604 eV Total energy + Delta-G solvation = -4194.842934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.39856 -40.47771 -39.13989 -38.82807 -36.51541 -36.03584 -35.25402 -33.34126 -32.67388 -31.66245 -29.55820 -28.17423 -27.93707 -26.54389 -25.99504 -24.62339 -22.72569 -22.30321 -21.56136 -21.02258 -20.70624 -19.84133 -18.15218 -17.96109 -17.43360 -17.20288 -17.14038 -16.69452 -16.46040 -16.32509 -16.20295 -15.94438 -15.72859 -15.39331 -15.12774 -14.75752 -14.65811 -14.35548 -14.12493 -13.69342 -13.61325 -13.41594 -13.20159 -13.15813 -12.93358 -12.76865 -12.74202 -12.62201 -12.46299 -12.41071 -12.32451 -12.23260 -12.10973 -12.07722 -11.90448 -11.73294 -11.55963 -11.45460 -10.74724 -10.61597 -10.24921 -10.05367 -9.98375 -9.32101 -8.46066 -5.94394 1.39813 1.42348 1.52629 1.63772 2.05183 2.10708 2.29668 2.81629 2.91619 3.21203 3.31678 3.55440 3.68227 3.80163 3.88827 3.92637 4.08697 4.17389 4.25230 4.28350 4.31989 4.37842 4.39826 4.50077 4.51141 4.52175 4.53406 4.58324 4.64189 4.70265 4.74299 4.84001 4.84536 4.85829 4.96979 5.01895 5.03150 5.07051 5.17630 5.27124 5.36043 5.41251 5.42009 5.49222 5.84985 5.95118 6.11063 6.22282 6.53463 6.61611 7.13885 7.24880 7.56593 8.12876 8.70922 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021261 B = 0.001643 C = 0.001581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.631404 B =17040.016985 C =17701.870347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.056 3.944 4 C -0.112 4.112 5 C -0.092 4.092 6 C -0.102 4.102 7 H 0.123 0.877 8 C -0.146 4.146 9 C 0.516 3.484 10 O -0.581 6.581 11 N -0.712 5.712 12 C 0.142 3.858 13 H 0.093 0.907 14 C -0.124 4.124 15 C 0.045 3.955 16 N -0.512 5.512 17 C 0.049 3.951 18 C 0.437 3.563 19 O -0.615 6.615 20 N -0.571 5.571 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.990 3.010 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.034 3.966 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.411 0.589 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.077 0.923 47 H 0.075 0.925 48 H 0.111 0.889 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.073 0.927 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.126 -10.471 -7.808 28.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.149 4.149 5 C -0.130 4.130 6 C -0.123 4.123 7 H 0.141 0.859 8 C -0.203 4.203 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.365 5.365 12 C 0.036 3.964 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.083 4.083 16 N -0.238 5.238 17 C -0.082 4.082 18 C 0.225 3.775 19 O -0.502 6.502 20 N -0.208 5.208 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.210 4.210 24 N -0.560 5.560 25 Si 0.814 3.186 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.199 1.199 29 C -0.094 4.094 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.248 0.752 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.051 0.949 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.129 0.871 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.091 0.909 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -25.479 -8.964 -7.477 28.026 hybrid contribution 0.887 -0.734 0.693 1.344 sum -24.592 -9.698 -6.784 27.292 Atomic orbital electron populations 1.22911 0.79725 1.03768 1.00723 1.87818 1.21305 1.28964 1.95597 1.22626 0.94547 0.84208 1.00645 1.21508 0.92641 0.96832 1.03964 1.21210 0.92654 0.96366 1.02757 1.21316 0.96300 0.92400 1.02274 0.85950 1.21862 1.02165 1.01692 0.94605 1.21220 0.82013 0.92073 0.74305 1.90687 1.61848 1.42371 1.51124 1.46140 1.06846 1.09226 1.74241 1.21632 0.94017 0.84564 0.96179 0.88927 1.22853 0.95113 1.01475 0.96935 1.23236 0.93048 0.99696 0.92286 1.64603 1.01723 1.52450 1.04987 1.22012 0.91220 0.97458 0.97553 1.20760 0.83181 0.84726 0.88878 1.90452 1.72712 1.38138 1.48857 1.41892 1.13714 1.39711 1.25478 1.19615 0.97465 1.24389 1.04871 0.90351 1.25983 0.97885 0.96055 1.01079 1.69653 1.19547 1.29375 1.37377 0.85028 0.77321 0.78379 0.77852 1.19763 1.19502 1.19870 1.23257 0.89404 1.00338 0.96375 0.93410 0.93328 0.88544 0.93048 0.92920 0.90464 0.90333 0.91863 0.92250 0.91270 0.93165 0.89488 0.75185 0.90772 0.91042 0.94906 0.90525 0.90722 0.87055 0.76967 0.91308 0.90886 0.87924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.72 10.70 -148.98 -1.59 -8.32 16 3 C 0.06 0.75 5.94 71.98 0.43 1.18 16 4 C -0.11 -1.32 5.34 30.60 0.16 -1.16 16 5 C -0.09 -1.30 4.03 30.60 0.12 -1.17 16 6 C -0.10 -1.31 2.72 -11.54 -0.03 -1.34 16 7 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 8 C -0.15 -1.61 8.85 71.98 0.64 -0.98 16 9 C 0.52 10.27 7.15 87.66 0.63 10.90 16 10 O -0.58 -16.48 15.57 -3.03 -0.05 -16.53 16 11 N -0.71 -12.53 4.95 -438.38 -2.17 -14.70 16 12 C 0.14 3.12 3.34 45.87 0.15 3.28 16 13 H 0.09 2.22 7.56 -2.39 -0.02 2.20 16 14 C -0.12 -3.35 6.78 31.80 0.22 -3.13 16 15 C 0.04 1.48 5.31 86.65 0.46 1.94 16 16 N -0.51 -15.87 5.26 -887.57 -4.67 -20.54 16 17 C 0.05 1.59 5.52 85.56 0.47 2.07 16 18 C 0.44 20.16 7.49 87.66 0.66 20.82 16 19 O -0.62 -32.95 13.09 -3.09 -0.04 -32.99 16 20 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 16 21 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 22 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 23 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 24 N -0.92 -48.65 13.05 21.66 0.28 -48.37 16 25 Si 0.99 42.41 29.55 68.60 2.03 44.44 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 29 C 0.03 0.73 6.47 86.45 0.56 1.29 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.08 0.88 6.57 -2.39 -0.02 0.87 16 37 H 0.06 1.03 7.96 -2.39 -0.02 1.01 16 38 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.07 0.67 7.56 -2.39 -0.02 0.66 16 40 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.73 6.57 -2.39 -0.02 0.71 16 42 H 0.41 5.27 7.75 -92.71 -0.72 4.55 16 43 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.07 1.89 8.05 -2.39 -0.02 1.87 16 45 H 0.03 1.06 8.02 -2.39 -0.02 1.05 16 46 H 0.08 3.22 5.96 -2.38 -0.01 3.20 16 47 H 0.07 2.06 7.81 -2.39 -0.02 2.04 16 48 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 49 H 0.40 18.73 7.90 -92.71 -0.73 18.00 16 50 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 51 H 0.07 1.24 7.06 -2.39 -0.02 1.22 16 52 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -71.92 415.84 -1.37 -73.29 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.53 Total: 36.58 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 6.99 Total: 17.29 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -8.18 Total: -113.75 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -1.68 Total: -57.84 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -71.92 -1.37 -73.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318293004.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.567 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds