Wall clock time and date at job start Wed Apr 1 2020 00:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 O 1.42899 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.42904 * 114.00329 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47382 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.46508 * 120.00041 * 0.02562 * 8 6 5 10 10 C 1.52997 * 109.47138 * 269.99849 * 9 8 6 11 11 C 1.46501 * 120.00405 * 180.02562 * 8 6 5 12 12 H 1.08992 * 110.76771 * 176.80185 * 11 8 6 13 13 C 1.55139 * 110.70406 * 53.59783 * 11 8 6 14 14 C 1.54899 * 101.65439 * 205.96940 * 13 11 8 15 15 N 1.47851 * 104.79852 * 37.07026 * 14 13 11 16 16 C 1.46898 * 111.00086 * 213.63671 * 15 14 13 17 17 C 1.50696 * 109.47176 * 290.84181 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47350 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46893 * 120.00104 * 24 22 20 27 27 H 1.48493 * 109.47057 * 240.00163 * 24 22 20 28 28 C 1.47443 * 108.56266 * 335.90482 * 15 14 13 29 29 H 1.08992 * 109.47517 * 300.00595 * 1 2 3 30 30 H 1.09001 * 109.46518 * 60.00981 * 1 2 3 31 31 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47760 * 239.99118 * 2 1 3 33 33 H 1.09005 * 109.46822 * 119.99417 * 2 1 3 34 34 H 1.08992 * 109.47485 * 59.99385 * 3 2 1 35 35 H 1.09001 * 109.46697 * 299.98909 * 3 2 1 36 36 H 1.09004 * 109.46757 * 59.99676 * 5 4 3 37 37 H 1.08996 * 109.46901 * 300.00149 * 5 4 3 38 38 H 1.09000 * 109.46608 * 30.00316 * 9 8 6 39 39 H 1.08996 * 109.46767 * 149.99489 * 9 8 6 40 40 H 1.08993 * 109.47417 * 299.99953 * 10 9 8 41 41 H 1.08998 * 109.47083 * 60.00260 * 10 9 8 42 42 H 1.09002 * 109.47038 * 179.97438 * 10 9 8 43 43 H 1.09004 * 110.99230 * 324.05785 * 13 11 8 44 44 H 1.08996 * 110.99204 * 87.83471 * 13 11 8 45 45 H 1.09002 * 110.37467 * 278.24423 * 14 13 11 46 46 H 1.09002 * 110.38059 * 155.90263 * 14 13 11 47 47 H 1.09000 * 109.46741 * 170.84122 * 16 15 14 48 48 H 1.09002 * 109.46898 * 50.84113 * 16 15 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.88572 * 120.39640 * 28 15 14 52 52 H 1.08998 * 109.88803 * 241.42011 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7393 0.0007 9 6 5.6863 5.0620 -0.0009 10 6 5.4677 5.5210 -1.4439 11 6 7.7769 3.6238 0.0014 12 1 8.2424 4.6076 -0.0562 13 6 8.2562 2.7209 -1.1656 14 6 9.6048 2.1911 -0.6177 15 7 9.3711 1.9870 0.8279 16 6 10.5881 2.2648 1.6022 17 6 11.6171 1.2008 1.3198 18 8 11.3620 0.2998 0.5488 19 7 12.8213 1.2508 1.9231 20 6 13.7573 0.2824 1.6665 21 1 13.5298 -0.5202 0.9807 22 6 15.0008 0.3372 2.2842 23 7 15.2795 1.3168 3.1145 24 14 16.2764 -0.9819 1.9340 25 1 15.7198 -1.9655 0.9707 26 1 17.4909 -0.3544 1.3539 27 1 16.6327 -1.6739 3.1986 28 6 8.2632 2.8624 1.2524 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6767 1.9562 -0.8901 36 1 3.7282 3.2894 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 4.7264 5.0077 0.5126 39 1 6.3333 5.7732 0.5126 40 1 6.4275 5.5753 -1.9574 41 1 4.8206 4.8098 -1.9573 42 1 4.9985 6.5049 -1.4450 43 1 7.5569 1.9029 -1.3390 44 1 8.4052 3.3037 -2.0745 45 1 10.3934 2.9271 -0.7744 46 1 9.8648 1.2473 -1.0971 47 1 10.3495 2.2664 2.6658 48 1 10.9854 3.2392 1.3175 49 1 13.0254 1.9716 2.5394 50 1 16.1474 1.3547 3.5459 51 1 7.4506 2.2608 1.6597 52 1 8.6155 3.5677 2.0051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318460325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:03 Heat of formation + Delta-G solvation = -102.305183 kcal Electronic energy + Delta-G solvation = -30413.321816 eV Core-core repulsion = 26220.497361 eV Total energy + Delta-G solvation = -4192.824455 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.67352 -38.81272 -38.07426 -37.04201 -35.96475 -34.02628 -33.79292 -31.93011 -31.09750 -30.28407 -29.11903 -27.81835 -26.48174 -25.71069 -24.11982 -23.67871 -21.93515 -21.65291 -20.92906 -19.09122 -19.02674 -17.80230 -17.44194 -17.24609 -16.79960 -16.06029 -15.83716 -15.41613 -15.26621 -14.90263 -14.44720 -14.33655 -14.27163 -14.21854 -13.82608 -13.69071 -13.56692 -13.35352 -12.84625 -12.76803 -12.58887 -12.40708 -12.35839 -12.26716 -11.96358 -11.82935 -11.62057 -11.48153 -11.43478 -11.31155 -11.27352 -11.18561 -11.02138 -10.82907 -10.63524 -10.27745 -10.14124 -10.01273 -9.49431 -9.41895 -8.86676 -8.30538 -7.87159 -7.66317 -6.33513 -3.73542 2.42534 2.48129 3.22216 3.31983 3.40064 3.45065 4.02200 4.16414 4.22600 4.37369 4.42784 4.56987 4.61545 4.65118 4.73182 4.76965 4.88387 4.90266 4.93488 4.99492 5.01256 5.07063 5.09505 5.24020 5.26855 5.33018 5.33587 5.34236 5.50549 5.59896 5.62984 5.68753 5.74856 5.76686 5.86288 5.88423 5.95091 5.98648 6.05379 6.28171 6.40724 6.61901 6.65626 6.74391 7.18284 7.43063 7.46220 7.63646 8.09447 8.16317 8.72261 9.27813 9.64725 10.17810 10.84708 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.002042 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.046428 B =13709.418061 C =14854.391722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.362 6.362 5 C 0.046 3.954 6 C 0.508 3.492 7 O -0.486 6.486 8 N -0.607 5.607 9 C 0.102 3.898 10 C -0.174 4.174 11 C 0.130 3.870 12 H 0.094 0.906 13 C -0.145 4.145 14 C 0.060 3.940 15 N -0.495 5.495 16 C 0.040 3.960 17 C 0.447 3.553 18 O -0.573 6.573 19 N -0.569 5.569 20 C -0.294 4.294 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.905 5.905 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.283 1.283 27 H -0.282 1.282 28 C 0.039 3.961 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.039 0.961 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.046 0.954 49 H 0.391 0.609 50 H 0.269 0.731 51 H 0.085 0.915 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.724 13.057 -5.726 31.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.280 6.280 5 C -0.034 4.034 6 C 0.294 3.706 7 O -0.358 6.358 8 N -0.343 5.343 9 C -0.021 4.021 10 C -0.232 4.232 11 C 0.026 3.974 12 H 0.112 0.888 13 C -0.184 4.184 14 C -0.068 4.068 15 N -0.219 5.219 16 C -0.092 4.092 17 C 0.232 3.768 18 O -0.456 6.456 19 N -0.207 5.207 20 C -0.424 4.424 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.547 5.547 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.209 1.209 27 H -0.208 1.208 28 C -0.091 4.091 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.085 0.915 45 H 0.057 0.943 46 H 0.113 0.887 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.224 0.776 50 H 0.079 0.921 51 H 0.103 0.897 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -27.465 11.155 -6.041 30.253 hybrid contribution 0.923 1.258 0.243 1.580 sum -26.541 12.413 -5.798 29.869 Atomic orbital electron populations 1.21693 0.94702 1.02368 1.01861 1.21458 0.95529 0.95374 1.03907 1.22623 0.80564 0.98370 1.00029 1.88043 1.19464 1.25173 1.95354 1.22282 0.92170 0.86870 1.02045 1.20182 0.88368 0.84482 0.77547 1.90827 1.73797 1.25835 1.45337 1.47881 1.06048 1.05646 1.74748 1.21636 0.98772 0.84229 0.97466 1.22250 1.02726 1.01440 0.96785 1.22375 0.78520 0.99538 0.96992 0.88823 1.23204 0.98666 1.00166 0.96352 1.22920 0.94495 1.01306 0.88069 1.63204 1.04207 1.51147 1.03369 1.22139 0.91099 0.96950 0.98983 1.19760 0.83296 0.88360 0.85384 1.90520 1.79109 1.37281 1.38681 1.41868 1.11831 1.26080 1.40898 1.19754 0.92517 1.05206 1.24918 0.87917 1.25239 0.98330 0.98072 0.96485 1.69626 1.23589 1.31812 1.29646 0.85811 0.79979 0.80407 0.78220 1.19244 1.20881 1.20821 1.23163 0.95678 0.94496 0.95717 0.92570 0.92600 0.91900 0.90870 0.90812 0.93270 0.93315 0.90632 0.90609 0.90444 0.89897 0.91882 0.92447 0.91361 0.88251 0.91507 0.94307 0.88733 0.89545 0.93571 0.77606 0.92085 0.89707 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.91 37.16 0.37 -0.43 16 2 C -0.13 -0.95 6.30 -26.73 -0.17 -1.12 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 O -0.36 -4.24 9.88 -55.14 -0.54 -4.78 16 5 C 0.05 0.41 4.97 36.00 0.18 0.59 16 6 C 0.51 6.31 6.86 -10.99 -0.08 6.23 16 7 O -0.49 -8.58 12.85 -14.35 -0.18 -8.77 16 8 N -0.61 -6.02 2.54 -164.04 -0.42 -6.43 16 9 C 0.10 0.57 5.91 -4.04 -0.02 0.55 16 10 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 11 C 0.13 1.55 3.43 -66.11 -0.23 1.33 16 12 H 0.09 0.91 7.90 -51.93 -0.41 0.50 16 13 C -0.15 -2.07 6.38 -24.60 -0.16 -2.23 16 14 C 0.06 1.06 5.74 -2.30 -0.01 1.05 16 15 N -0.50 -9.37 4.86 -232.69 -1.13 -10.50 16 16 C 0.04 0.77 5.05 -4.98 -0.03 0.75 16 17 C 0.45 11.20 7.58 -10.99 -0.08 11.12 16 18 O -0.57 -16.47 14.61 5.55 0.08 -16.39 16 19 N -0.57 -15.05 5.29 -10.96 -0.06 -15.11 16 20 C -0.29 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.13 7.16 -52.49 -0.38 2.75 16 22 C 0.02 0.54 5.50 -17.47 -0.10 0.45 16 23 N -0.90 -25.28 13.05 55.50 0.72 -24.56 16 24 Si 0.93 21.74 29.55 -169.99 -5.02 16.72 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 C 0.04 0.58 6.13 -2.84 -0.02 0.56 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.49 7.40 -51.93 -0.38 0.10 16 37 H 0.08 0.49 7.18 -51.93 -0.37 0.12 16 38 H 0.08 0.30 6.44 -51.93 -0.33 -0.04 16 39 H 0.08 0.38 7.98 -51.93 -0.41 -0.03 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.31 7.22 -51.93 -0.37 -0.07 16 42 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.10 1.68 5.69 -51.93 -0.30 1.39 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.66 7.62 -51.93 -0.40 0.26 16 46 H 0.09 1.99 7.38 -51.93 -0.38 1.60 16 47 H 0.09 1.54 8.03 -51.93 -0.42 1.12 16 48 H 0.05 0.79 7.85 -51.93 -0.41 0.39 16 49 H 0.39 9.85 7.90 -40.82 -0.32 9.52 16 50 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 51 H 0.08 1.43 6.40 -51.93 -0.33 1.10 16 52 H 0.05 0.66 7.55 -51.93 -0.39 0.27 16 LS Contribution 413.00 15.07 6.22 6.22 Total: -1.00 -36.47 413.00 -9.19 -45.66 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -8.98 Total: 7.53 kcal Atomic # 6 Polarization: 10.29 SS G_CDS: 0.12 Total: 10.41 kcal Atomic # 7 Polarization: -55.72 SS G_CDS: -0.88 Total: -56.60 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.65 Total: -29.94 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.47 -9.19 -45.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318460325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.646 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds