Wall clock time and date at job start Wed Apr 1 2020 00:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46973 * 2 1 4 4 O 1.42899 * 109.47069 * 179.97438 * 3 2 1 5 5 C 1.42904 * 114.00329 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47382 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99809 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99935 * 179.97438 * 6 5 4 9 9 C 1.46508 * 120.00041 * 0.02562 * 8 6 5 10 10 C 1.52997 * 109.47138 * 269.99849 * 9 8 6 11 11 C 1.46501 * 120.00405 * 180.02562 * 8 6 5 12 12 H 1.08992 * 110.76771 * 176.80185 * 11 8 6 13 13 C 1.55139 * 110.70406 * 53.59783 * 11 8 6 14 14 C 1.54899 * 101.65439 * 205.96940 * 13 11 8 15 15 N 1.47851 * 104.79852 * 37.07026 * 14 13 11 16 16 C 1.46898 * 111.00086 * 213.63671 * 15 14 13 17 17 C 1.50696 * 109.47176 * 290.84181 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31412 * 119.99962 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99686 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47350 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46893 * 120.00104 * 24 22 20 27 27 H 1.48493 * 109.47057 * 240.00163 * 24 22 20 28 28 C 1.47443 * 108.56266 * 335.90482 * 15 14 13 29 29 H 1.08992 * 109.47517 * 300.00595 * 1 2 3 30 30 H 1.09001 * 109.46518 * 60.00981 * 1 2 3 31 31 H 1.09000 * 109.46885 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47760 * 239.99118 * 2 1 3 33 33 H 1.09005 * 109.46822 * 119.99417 * 2 1 3 34 34 H 1.08992 * 109.47485 * 59.99385 * 3 2 1 35 35 H 1.09001 * 109.46697 * 299.98909 * 3 2 1 36 36 H 1.09004 * 109.46757 * 59.99676 * 5 4 3 37 37 H 1.08996 * 109.46901 * 300.00149 * 5 4 3 38 38 H 1.09000 * 109.46608 * 30.00316 * 9 8 6 39 39 H 1.08996 * 109.46767 * 149.99489 * 9 8 6 40 40 H 1.08993 * 109.47417 * 299.99953 * 10 9 8 41 41 H 1.08998 * 109.47083 * 60.00260 * 10 9 8 42 42 H 1.09002 * 109.47038 * 179.97438 * 10 9 8 43 43 H 1.09004 * 110.99230 * 324.05785 * 13 11 8 44 44 H 1.08996 * 110.99204 * 87.83471 * 13 11 8 45 45 H 1.09002 * 110.37467 * 278.24423 * 14 13 11 46 46 H 1.09002 * 110.38059 * 155.90263 * 14 13 11 47 47 H 1.09000 * 109.46741 * 170.84122 * 16 15 14 48 48 H 1.09002 * 109.46898 * 50.84113 * 16 15 14 49 49 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99308 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.88572 * 120.39640 * 28 15 14 52 52 H 1.08998 * 109.88803 * 241.42011 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7393 0.0007 9 6 5.6863 5.0620 -0.0009 10 6 5.4677 5.5210 -1.4439 11 6 7.7769 3.6238 0.0014 12 1 8.2424 4.6076 -0.0562 13 6 8.2562 2.7209 -1.1656 14 6 9.6048 2.1911 -0.6177 15 7 9.3711 1.9870 0.8279 16 6 10.5881 2.2648 1.6022 17 6 11.6171 1.2008 1.3198 18 8 11.3620 0.2998 0.5488 19 7 12.8213 1.2508 1.9231 20 6 13.7573 0.2824 1.6665 21 1 13.5298 -0.5202 0.9807 22 6 15.0008 0.3372 2.2842 23 7 15.2795 1.3168 3.1145 24 14 16.2764 -0.9819 1.9340 25 1 15.7198 -1.9655 0.9707 26 1 17.4909 -0.3544 1.3539 27 1 16.6327 -1.6739 3.1986 28 6 8.2632 2.8624 1.2524 29 1 -0.3634 0.5139 0.8898 30 1 -0.3632 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9564 0.8898 35 1 1.6767 1.9562 -0.8901 36 1 3.7282 3.2894 0.8896 37 1 3.7290 3.2884 -0.8903 38 1 4.7264 5.0077 0.5126 39 1 6.3333 5.7732 0.5126 40 1 6.4275 5.5753 -1.9574 41 1 4.8206 4.8098 -1.9573 42 1 4.9985 6.5049 -1.4450 43 1 7.5569 1.9029 -1.3390 44 1 8.4052 3.3037 -2.0745 45 1 10.3934 2.9271 -0.7744 46 1 9.8648 1.2473 -1.0971 47 1 10.3495 2.2664 2.6658 48 1 10.9854 3.2392 1.3175 49 1 13.0254 1.9716 2.5394 50 1 16.1474 1.3547 3.5459 51 1 7.4506 2.2608 1.6597 52 1 8.6155 3.5677 2.0051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318460325.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:02 Heat of formation + Delta-G solvation = -129.301178 kcal Electronic energy + Delta-G solvation = -30414.492451 eV Core-core repulsion = 26220.497361 eV Total energy + Delta-G solvation = -4193.995089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.63651 -40.33745 -39.19428 -38.33505 -36.83699 -35.91588 -34.59572 -33.39089 -32.89122 -31.10108 -30.06846 -28.99427 -27.80995 -26.51813 -25.89314 -24.21626 -22.67899 -22.47169 -22.35479 -20.99919 -19.90359 -19.87882 -18.29948 -18.09814 -17.62387 -17.45437 -16.94456 -16.75297 -16.27890 -16.15430 -15.96042 -15.83093 -15.52595 -14.99420 -14.88220 -14.74852 -14.53726 -14.35643 -14.32948 -13.90387 -13.54603 -13.36479 -13.29835 -13.12436 -13.00385 -12.98396 -12.88246 -12.73734 -12.52252 -12.42649 -12.40221 -12.18691 -12.15163 -12.10349 -11.85533 -11.80182 -11.67821 -11.50100 -10.65038 -10.48996 -10.30376 -10.00786 -9.74350 -9.09069 -8.47042 -5.95470 1.35370 1.39977 1.54681 1.60373 1.68067 2.05537 2.28519 2.77343 2.90561 3.19170 3.35787 3.52101 3.66605 3.77993 3.94828 4.02671 4.08733 4.13141 4.20892 4.24638 4.26275 4.29856 4.36155 4.41353 4.42320 4.44210 4.49946 4.55766 4.62595 4.63526 4.65382 4.80961 4.83863 4.88880 4.98738 4.99947 5.11185 5.16633 5.21339 5.22544 5.34945 5.40656 5.42036 5.68577 5.91057 6.05332 6.11238 6.18257 6.45159 6.61699 7.13395 7.24453 7.56374 8.13833 8.70728 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016495 B = 0.002042 C = 0.001885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.046428 B =13709.418061 C =14854.391722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.058 3.942 4 O -0.405 6.405 5 C 0.049 3.951 6 C 0.499 3.501 7 O -0.553 6.553 8 N -0.599 5.599 9 C 0.095 3.905 10 C -0.171 4.171 11 C 0.141 3.859 12 H 0.131 0.869 13 C -0.135 4.135 14 C 0.062 3.938 15 N -0.530 5.530 16 C 0.055 3.945 17 C 0.440 3.560 18 O -0.619 6.619 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.075 0.925 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.277 1.277 26 H -0.268 1.268 27 H -0.270 1.270 28 C 0.042 3.958 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.048 0.952 46 H 0.045 0.955 47 H 0.106 0.894 48 H 0.077 0.923 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.059 0.941 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.044 16.470 -5.211 33.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.018 4.018 4 O -0.325 6.325 5 C -0.030 4.030 6 C 0.287 3.713 7 O -0.430 6.430 8 N -0.333 5.333 9 C -0.026 4.026 10 C -0.229 4.229 11 C 0.036 3.964 12 H 0.149 0.851 13 C -0.174 4.174 14 C -0.066 4.066 15 N -0.255 5.255 16 C -0.076 4.076 17 C 0.227 3.773 18 O -0.504 6.504 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.093 0.907 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.202 1.202 26 H -0.193 1.193 27 H -0.195 1.195 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.124 0.876 48 H 0.095 0.905 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.078 0.922 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -28.815 14.655 -5.506 32.793 hybrid contribution 1.299 0.195 0.086 1.317 sum -27.516 14.850 -5.420 31.734 Atomic orbital electron populations 1.21655 0.92672 1.02809 1.02856 1.21505 0.97279 0.95598 1.02322 1.22797 0.78843 0.98387 1.01771 1.88002 1.21605 1.27140 1.95739 1.22420 0.89398 0.86397 1.04756 1.20962 0.90087 0.84038 0.76172 1.90809 1.75181 1.28470 1.48537 1.47963 1.05070 1.06970 1.73292 1.22015 1.00067 0.81950 0.98531 1.22225 1.02246 1.02489 0.95935 1.22270 0.80202 1.00068 0.93836 0.85107 1.23049 0.95905 1.00020 0.98402 1.22752 0.96805 0.99258 0.87800 1.62974 1.04909 1.53846 1.03805 1.21986 0.89773 0.95709 1.00150 1.20848 0.83667 0.88903 0.83882 1.90497 1.79974 1.39511 1.40437 1.41910 1.12154 1.25879 1.41279 1.19672 0.94276 1.06048 1.26228 0.90736 1.26021 0.99456 1.00046 0.95709 1.69676 1.24417 1.32559 1.29422 0.84875 0.77538 0.77653 0.78266 1.20166 1.19294 1.19494 1.23114 0.93547 0.94292 0.97723 0.91562 0.91523 0.91817 0.92454 0.92507 0.91417 0.91414 0.87513 0.87725 0.88005 0.87979 0.92986 0.93043 0.89078 0.91370 0.88973 0.93361 0.93620 0.87642 0.90482 0.76950 0.91282 0.92223 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.13 -1.99 6.30 30.59 0.19 -1.80 16 3 C 0.06 0.82 5.94 71.98 0.43 1.25 16 4 O -0.41 -9.39 9.88 -129.94 -1.28 -10.67 16 5 C 0.05 0.78 4.97 71.24 0.35 1.14 16 6 C 0.50 12.10 6.86 87.66 0.60 12.70 16 7 O -0.55 -20.58 12.85 16.00 0.21 -20.38 16 8 N -0.60 -10.47 2.54 -791.30 -2.01 -12.48 16 9 C 0.10 0.66 5.91 86.38 0.51 1.17 16 10 C -0.17 -1.02 10.24 71.98 0.74 -0.28 16 11 C 0.14 3.08 3.43 46.17 0.16 3.24 16 12 H 0.13 1.96 7.90 -2.39 -0.02 1.94 16 13 C -0.14 -3.88 6.38 31.98 0.20 -3.67 16 14 C 0.06 2.28 5.74 86.77 0.50 2.78 16 15 N -0.53 -20.40 4.86 -890.10 -4.33 -24.73 16 16 C 0.06 2.11 5.05 85.56 0.43 2.54 16 17 C 0.44 22.78 7.58 87.66 0.66 23.44 16 18 O -0.62 -37.66 14.61 -3.05 -0.04 -37.70 16 19 N -0.57 -31.15 5.29 -306.99 -1.62 -32.77 16 20 C -0.33 -19.85 9.68 84.04 0.81 -19.04 16 21 H 0.07 4.79 7.16 -2.92 -0.02 4.77 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 23 N -0.92 -50.88 13.05 21.66 0.28 -50.60 16 24 Si 0.99 44.68 29.55 68.60 2.03 46.70 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 C 0.04 1.20 6.13 86.65 0.53 1.73 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.99 7.40 -2.39 -0.02 0.97 16 37 H 0.11 1.02 7.18 -2.39 -0.02 1.01 16 38 H 0.10 0.26 6.44 -2.39 -0.02 0.25 16 39 H 0.10 0.40 7.98 -2.39 -0.02 0.38 16 40 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.05 0.38 7.22 -2.39 -0.02 0.36 16 42 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.07 2.45 5.69 -2.39 -0.01 2.43 16 44 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.65 7.62 -2.39 -0.02 1.63 16 46 H 0.05 2.09 7.38 -2.39 -0.02 2.08 16 47 H 0.11 3.62 8.03 -2.39 -0.02 3.60 16 48 H 0.08 2.48 7.85 -2.39 -0.02 2.46 16 49 H 0.40 20.17 7.90 -92.70 -0.73 19.44 16 50 H 0.28 14.29 8.31 -92.71 -0.77 13.51 16 51 H 0.06 2.04 6.40 -2.39 -0.02 2.03 16 52 H 0.08 1.81 7.55 -2.39 -0.02 1.79 16 Total: -1.00 -86.43 413.00 0.71 -85.72 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.18 Total: 32.60 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 7.31 Total: 24.31 kcal Atomic # 7 Polarization: -112.91 SS G_CDS: -7.68 Total: -120.58 kcal Atomic # 8 Polarization: -67.63 SS G_CDS: -1.12 Total: -68.75 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Total: -86.43 0.71 -85.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318460325.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.583 kcal (2) G-P(sol) polarization free energy of solvation -86.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds