Wall clock time and date at job start Wed Apr 1 2020 00:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 O 1.42907 * 109.47084 * 120.00076 * 2 1 3 5 5 C 1.42900 * 114.00159 * 90.00043 * 4 2 1 6 6 C 1.50695 * 109.47073 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99921 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00025 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47077 * 176.03430 * 9 8 6 11 11 N 1.46898 * 110.01508 * 303.76166 * 10 9 8 12 12 C 1.46898 * 110.99806 * 305.54597 * 11 10 9 13 13 C 1.50695 * 109.46914 * 185.17149 * 12 11 10 14 14 O 1.21296 * 120.00290 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99886 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46852 * 59.99992 * 20 18 16 22 22 H 1.48500 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46970 * 299.99799 * 20 18 16 24 24 C 1.54263 * 110.02930 * 182.31402 * 10 9 8 25 25 C 1.54887 * 104.19615 * 217.10415 * 24 10 9 26 26 C 1.54892 * 102.75013 * 37.94767 * 25 24 10 27 27 C 1.53882 * 110.03099 * 65.15077 * 10 9 8 28 28 H 1.08995 * 109.46820 * 59.99983 * 1 2 3 29 29 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46638 * 300.00087 * 1 2 3 31 31 H 1.09006 * 109.47376 * 239.99620 * 2 1 3 32 32 H 1.08991 * 109.47801 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47043 * 300.00222 * 3 2 1 34 34 H 1.08998 * 109.47410 * 59.99508 * 3 2 1 35 35 H 1.08998 * 109.46873 * 60.00006 * 5 4 2 36 36 H 1.09004 * 109.47065 * 299.99960 * 5 4 2 37 37 H 0.97003 * 120.00144 * 359.97438 * 8 6 5 38 38 H 1.08992 * 109.47583 * 56.03299 * 9 8 6 39 39 H 1.09007 * 109.46845 * 296.03008 * 9 8 6 40 40 H 1.00896 * 111.00361 * 69.50588 * 11 10 9 41 41 H 1.08994 * 109.47559 * 305.17352 * 12 11 10 42 42 H 1.09006 * 109.46908 * 65.17333 * 12 11 10 43 43 H 0.97001 * 119.99877 * 0.02562 * 15 13 12 44 44 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 45 45 H 1.08995 * 110.49367 * 335.78490 * 24 10 9 46 46 H 1.09007 * 110.48049 * 98.43043 * 24 10 9 47 47 H 1.09008 * 110.75970 * 279.63544 * 25 24 10 48 48 H 1.09004 * 110.75773 * 156.26357 * 25 24 10 49 49 H 1.09002 * 110.48752 * 203.38225 * 26 25 24 50 50 H 1.09001 * 110.48395 * 80.73526 * 26 25 24 51 51 H 1.08991 * 110.03244 * 238.56899 * 27 10 9 52 52 H 1.09003 * 110.02934 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7015 -2.6832 2.2746 7 8 2.8761 -1.9806 3.2477 8 7 2.9557 -4.0050 2.3433 9 6 3.4426 -4.5932 3.5936 10 6 3.5554 -6.1107 3.4334 11 7 2.2608 -6.6705 3.0230 12 6 1.1968 -6.2744 3.9551 13 6 -0.0866 -6.9676 3.5763 14 8 -0.1122 -7.7182 2.6239 15 7 -1.2059 -6.7535 4.2959 16 6 -2.3734 -7.3845 3.9516 17 1 -2.3961 -8.0528 3.1035 18 6 -3.5275 -7.1634 4.6931 19 7 -3.5001 -6.3490 5.7241 20 14 -5.1183 -8.0226 4.2236 21 1 -4.9250 -9.4934 4.2908 22 1 -6.1944 -7.6207 5.1647 23 1 -5.5003 -7.6362 2.8416 24 6 4.0119 -6.7497 4.7611 25 6 4.9540 -7.8993 4.3253 26 6 5.7054 -7.2861 3.1176 27 6 4.6322 -6.4517 2.3883 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 2.9320 -2.2467 0.1987 36 1 1.2538 -2.5434 0.7125 37 1 2.8157 -4.5669 1.5652 38 1 2.7449 -4.3638 4.3990 39 1 4.4223 -4.1792 3.8326 40 1 2.0330 -6.4001 2.0781 41 1 1.4776 -6.5586 4.9692 42 1 1.0546 -5.1947 3.9066 43 1 -1.1856 -6.1530 5.0574 44 1 -4.3057 -6.1950 6.2420 45 1 4.5520 -6.0233 5.3683 46 1 3.1559 -7.1447 5.3084 47 1 4.3801 -8.7741 4.0194 48 1 5.6499 -8.1527 5.1251 49 1 6.0854 -8.0726 2.4654 50 1 6.5191 -6.6464 3.4594 51 1 4.1944 -7.0334 1.5772 52 1 5.0747 -5.5361 1.9957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319339969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:37 Heat of formation + Delta-G solvation = -127.904049 kcal Electronic energy + Delta-G solvation = -30830.441855 eV Core-core repulsion = 26636.507350 eV Total energy + Delta-G solvation = -4193.934505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37878 -39.23182 -38.09752 -37.82746 -34.83542 -34.04295 -33.28946 -32.99745 -31.20744 -29.66575 -28.87687 -27.90771 -27.38976 -26.20889 -24.54374 -23.69047 -21.58405 -21.18363 -20.34070 -19.28569 -19.00058 -17.86468 -17.62938 -17.25036 -16.62336 -16.19090 -15.71688 -15.52194 -15.17623 -15.03019 -14.68513 -14.60915 -14.39414 -14.13982 -13.73629 -13.53186 -13.50515 -13.11451 -13.06109 -12.96467 -12.65514 -12.44489 -12.23448 -12.16905 -11.71379 -11.63154 -11.57228 -11.37630 -11.23042 -11.14563 -11.05845 -10.98763 -10.85399 -10.78621 -10.56793 -10.44372 -10.20904 -9.92234 -9.86002 -9.49443 -9.21645 -8.50536 -8.07436 -7.95574 -6.40774 -3.81972 2.50945 2.62678 3.19840 3.25807 3.29769 3.71675 3.91071 4.05398 4.27524 4.40978 4.45691 4.55027 4.68545 4.74628 4.77832 4.86578 4.89577 5.00547 5.08406 5.14059 5.25143 5.25524 5.34248 5.40976 5.42395 5.43410 5.55682 5.57395 5.61986 5.66497 5.69878 5.80180 5.82947 5.86014 5.90816 5.97336 5.99261 6.01199 6.07836 6.15400 6.26538 6.30302 6.38276 6.85624 7.17464 7.31592 7.55169 7.56097 8.06246 8.10013 8.61714 9.18208 9.55015 10.06336 10.76756 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006345 B = 0.003585 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4411.821909 B = 7808.910889 C =11445.247277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.357 6.357 5 C 0.043 3.957 6 C 0.515 3.485 7 O -0.518 6.518 8 N -0.727 5.727 9 C 0.092 3.908 10 C 0.101 3.899 11 N -0.645 5.645 12 C 0.044 3.956 13 C 0.442 3.558 14 O -0.584 6.584 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.023 3.977 19 N -0.901 5.901 20 Si 0.930 3.070 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C -0.111 4.111 25 C -0.117 4.117 26 C -0.119 4.119 27 C -0.117 4.117 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.399 0.601 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.343 0.657 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.501 8.565 -9.090 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.022 3.978 3 C -0.206 4.206 4 O -0.276 6.276 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.392 6.392 8 N -0.382 5.382 9 C -0.033 4.033 10 C 0.009 3.991 11 N -0.277 5.277 12 C -0.089 4.089 13 C 0.227 3.773 14 O -0.468 6.468 15 N -0.200 5.200 16 C -0.430 4.430 17 H 0.120 0.880 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.200 1.200 24 C -0.149 4.149 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.155 4.155 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.163 0.837 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.094 0.906 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.572 8.141 -8.404 20.286 hybrid contribution -1.238 0.525 -0.526 1.444 sum 15.334 8.666 -8.930 19.748 Atomic orbital electron populations 1.22327 0.95612 1.02793 1.02842 1.22181 0.93995 0.93932 0.87734 1.21848 1.01767 0.94308 1.02680 1.88064 1.86587 1.17573 1.35345 1.22229 1.01435 0.84364 0.95660 1.20226 0.77873 0.82071 0.89830 1.90738 1.50444 1.60480 1.37538 1.45837 1.68773 1.08237 1.15349 1.22238 1.00224 0.94404 0.86427 1.21957 0.90956 0.89401 0.96764 1.60325 0.99905 1.61941 1.05539 1.21774 0.91628 0.97659 0.97806 1.19772 0.84627 0.86630 0.86247 1.90516 1.85257 1.40517 1.30505 1.41865 1.08039 1.41690 1.28384 1.19635 0.85750 1.23996 1.13626 0.88015 1.25263 0.99662 0.97207 0.95764 1.69610 1.30175 1.36080 1.18303 0.85928 0.80546 0.79548 0.78248 1.19886 1.20968 1.19952 1.22406 0.99822 0.97548 0.95138 1.22411 0.97578 0.98341 0.97114 1.22285 0.97263 0.98829 0.97320 1.22290 0.95256 1.00025 0.97963 0.91505 0.92216 0.91460 0.92084 0.91992 0.91143 0.91545 0.90370 0.90027 0.76676 0.90680 0.91158 0.83698 0.89337 0.93583 0.77498 0.91799 0.91318 0.90249 0.90642 0.91909 0.91681 0.91975 0.90377 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.53 37.16 0.35 -1.25 16 2 C 0.08 0.73 3.34 -26.73 -0.09 0.64 16 3 C -0.15 -1.19 9.56 37.16 0.36 -0.84 16 4 O -0.36 -4.56 9.52 -55.14 -0.52 -5.09 16 5 C 0.04 0.46 6.23 36.00 0.22 0.68 16 6 C 0.51 6.92 7.91 -10.99 -0.09 6.83 16 7 O -0.52 -9.31 16.50 -14.36 -0.24 -9.55 16 8 N -0.73 -8.07 5.06 -60.29 -0.31 -8.37 16 9 C 0.09 1.09 3.56 -4.04 -0.01 1.07 16 10 C 0.10 1.14 0.55 -130.48 -0.07 1.07 16 11 N -0.65 -9.39 5.47 -100.08 -0.55 -9.94 16 12 C 0.04 0.75 5.28 -4.98 -0.03 0.73 16 13 C 0.44 10.26 7.83 -10.99 -0.09 10.17 16 14 O -0.58 -15.44 15.89 5.54 0.09 -15.36 16 15 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 19 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 20 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C -0.11 -1.23 5.83 -25.07 -0.15 -1.37 16 25 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 26 C -0.12 -1.05 6.83 -25.07 -0.17 -1.23 16 27 C -0.12 -1.11 5.74 -25.61 -0.15 -1.25 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.45 7.79 -51.93 -0.40 0.04 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 36 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 37 H 0.40 3.60 7.17 -40.82 -0.29 3.30 16 38 H 0.07 1.04 6.73 -51.93 -0.35 0.69 16 39 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 40 H 0.34 4.95 7.34 -39.29 -0.29 4.66 16 41 H 0.09 1.44 6.24 -51.93 -0.32 1.12 16 42 H 0.05 0.77 6.66 -51.93 -0.35 0.43 16 43 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.07 0.67 7.85 -51.93 -0.41 0.27 16 46 H 0.08 1.00 6.18 -51.93 -0.32 0.68 16 47 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 52 H 0.06 0.55 7.54 -51.93 -0.39 0.16 16 LS Contribution 415.89 15.07 6.27 6.27 Total: -1.00 -34.28 415.89 -8.76 -43.04 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: -8.83 Total: 15.37 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -0.32 Total: 5.90 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.19 Total: -56.68 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.67 Total: -29.99 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.28 -8.76 -43.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319339969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.863 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds