Wall clock time and date at job start Wed Apr 1 2020 00:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47550 * 2 1 4 4 O 1.42907 * 109.47084 * 120.00076 * 2 1 3 5 5 C 1.42900 * 114.00159 * 90.00043 * 4 2 1 6 6 C 1.50695 * 109.47073 * 179.97438 * 5 4 2 7 7 O 1.21286 * 119.99921 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 4 9 9 C 1.46500 * 120.00025 * 180.02562 * 8 6 5 10 10 C 1.53009 * 109.47077 * 176.03430 * 9 8 6 11 11 N 1.46898 * 110.01508 * 303.76166 * 10 9 8 12 12 C 1.46898 * 110.99806 * 305.54597 * 11 10 9 13 13 C 1.50695 * 109.46914 * 185.17149 * 12 11 10 14 14 O 1.21296 * 120.00290 * 0.02562 * 13 12 11 15 15 N 1.34778 * 120.00208 * 180.02562 * 13 12 11 16 16 C 1.37100 * 120.00252 * 180.02562 * 15 13 12 17 17 H 1.08001 * 119.99886 * 359.97438 * 16 15 13 18 18 C 1.38953 * 119.99902 * 180.02562 * 16 15 13 19 19 N 1.31411 * 119.99966 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99944 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46852 * 59.99992 * 20 18 16 22 22 H 1.48500 * 109.46875 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46970 * 299.99799 * 20 18 16 24 24 C 1.54263 * 110.02930 * 182.31402 * 10 9 8 25 25 C 1.54887 * 104.19615 * 217.10415 * 24 10 9 26 26 C 1.54892 * 102.75013 * 37.94767 * 25 24 10 27 27 C 1.53882 * 110.03099 * 65.15077 * 10 9 8 28 28 H 1.08995 * 109.46820 * 59.99983 * 1 2 3 29 29 H 1.09000 * 109.46790 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46638 * 300.00087 * 1 2 3 31 31 H 1.09006 * 109.47376 * 239.99620 * 2 1 3 32 32 H 1.08991 * 109.47801 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.47043 * 300.00222 * 3 2 1 34 34 H 1.08998 * 109.47410 * 59.99508 * 3 2 1 35 35 H 1.08998 * 109.46873 * 60.00006 * 5 4 2 36 36 H 1.09004 * 109.47065 * 299.99960 * 5 4 2 37 37 H 0.97003 * 120.00144 * 359.97438 * 8 6 5 38 38 H 1.08992 * 109.47583 * 56.03299 * 9 8 6 39 39 H 1.09007 * 109.46845 * 296.03008 * 9 8 6 40 40 H 1.00896 * 111.00361 * 69.50588 * 11 10 9 41 41 H 1.08994 * 109.47559 * 305.17352 * 12 11 10 42 42 H 1.09006 * 109.46908 * 65.17333 * 12 11 10 43 43 H 0.97001 * 119.99877 * 0.02562 * 15 13 12 44 44 H 0.97007 * 119.99667 * 180.02562 * 19 18 16 45 45 H 1.08995 * 110.49367 * 335.78490 * 24 10 9 46 46 H 1.09007 * 110.48049 * 98.43043 * 24 10 9 47 47 H 1.09008 * 110.75970 * 279.63544 * 25 24 10 48 48 H 1.09004 * 110.75773 * 156.26357 * 25 24 10 49 49 H 1.09002 * 110.48752 * 203.38225 * 26 25 24 50 50 H 1.09001 * 110.48395 * 80.73526 * 26 25 24 51 51 H 1.08991 * 110.03244 * 238.56899 * 27 10 9 52 52 H 1.09003 * 110.02934 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2001 -2.0782 0.9887 6 6 2.7015 -2.6832 2.2746 7 8 2.8761 -1.9806 3.2477 8 7 2.9557 -4.0050 2.3433 9 6 3.4426 -4.5932 3.5936 10 6 3.5554 -6.1107 3.4334 11 7 2.2608 -6.6705 3.0230 12 6 1.1968 -6.2744 3.9551 13 6 -0.0866 -6.9676 3.5763 14 8 -0.1122 -7.7182 2.6239 15 7 -1.2059 -6.7535 4.2959 16 6 -2.3734 -7.3845 3.9516 17 1 -2.3961 -8.0528 3.1035 18 6 -3.5275 -7.1634 4.6931 19 7 -3.5001 -6.3490 5.7241 20 14 -5.1183 -8.0226 4.2236 21 1 -4.9250 -9.4934 4.2908 22 1 -6.1944 -7.6207 5.1647 23 1 -5.5003 -7.6362 2.8416 24 6 4.0119 -6.7497 4.7611 25 6 4.9540 -7.8993 4.3253 26 6 5.7054 -7.2861 3.1176 27 6 4.6322 -6.4517 2.3883 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 2.9320 -2.2467 0.1987 36 1 1.2538 -2.5434 0.7125 37 1 2.8157 -4.5669 1.5652 38 1 2.7449 -4.3638 4.3990 39 1 4.4223 -4.1792 3.8326 40 1 2.0330 -6.4001 2.0781 41 1 1.4776 -6.5586 4.9692 42 1 1.0546 -5.1947 3.9066 43 1 -1.1856 -6.1530 5.0574 44 1 -4.3057 -6.1950 6.2420 45 1 4.5520 -6.0233 5.3683 46 1 3.1559 -7.1447 5.3084 47 1 4.3801 -8.7741 4.0194 48 1 5.6499 -8.1527 5.1251 49 1 6.0854 -8.0726 2.4654 50 1 6.5191 -6.6464 3.4594 51 1 4.1944 -7.0334 1.5772 52 1 5.0747 -5.5361 1.9957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319339969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:37 Heat of formation + Delta-G solvation = -153.090852 kcal Electronic energy + Delta-G solvation = -30831.534037 eV Core-core repulsion = 26636.507350 eV Total energy + Delta-G solvation = -4195.026687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42215 -40.36324 -39.62277 -38.88296 -36.07495 -35.74893 -34.58495 -33.74381 -33.24867 -30.71823 -29.71466 -28.93329 -28.12518 -27.63403 -26.02233 -24.89785 -22.28533 -22.17204 -21.36055 -20.85918 -20.11942 -19.84338 -18.63779 -18.10451 -17.91570 -17.17842 -17.02047 -16.67482 -16.43047 -16.30555 -15.92231 -15.85842 -15.51175 -15.46755 -15.14649 -14.75583 -14.53932 -14.15868 -14.00513 -13.94148 -13.80346 -13.52855 -13.47738 -13.09537 -13.07425 -12.93769 -12.80777 -12.44612 -12.38672 -12.33511 -12.20378 -12.09517 -11.90701 -11.79519 -11.69249 -11.67279 -11.49769 -11.32848 -10.95129 -10.69522 -10.35886 -10.22568 -10.02600 -9.37627 -8.46903 -5.96265 1.39024 1.40646 1.48375 1.51973 1.74178 2.04069 2.27804 2.81412 2.98578 3.19860 3.44302 3.57631 3.59616 3.74470 3.88194 3.97813 4.06723 4.14621 4.21570 4.23512 4.27019 4.31650 4.35668 4.38405 4.48133 4.56657 4.64069 4.70459 4.72147 4.80630 4.85656 4.86817 4.92450 4.93612 5.03153 5.11559 5.15263 5.24622 5.26412 5.29359 5.30411 5.37552 5.39724 5.58934 5.88685 6.08356 6.09936 6.38495 6.43767 6.58258 7.11353 7.11468 7.54930 8.09421 8.70302 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006345 B = 0.003585 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4411.821909 B = 7808.910889 C =11445.247277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.392 6.392 5 C 0.043 3.957 6 C 0.510 3.490 7 O -0.571 6.571 8 N -0.714 5.714 9 C 0.097 3.903 10 C 0.108 3.892 11 N -0.651 5.651 12 C 0.063 3.937 13 C 0.442 3.558 14 O -0.616 6.616 15 N -0.575 5.575 16 C -0.333 4.333 17 H 0.082 0.918 18 C -0.015 4.015 19 N -0.923 5.923 20 Si 0.994 3.006 21 H -0.271 1.271 22 H -0.272 1.272 23 H -0.270 1.270 24 C -0.115 4.115 25 C -0.116 4.116 26 C -0.114 4.114 27 C -0.112 4.112 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.411 0.589 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.344 0.656 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.393 0.607 44 H 0.277 0.723 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.075 0.925 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.568 8.599 -10.507 22.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.205 4.205 4 O -0.312 6.312 5 C -0.036 4.036 6 C 0.297 3.703 7 O -0.449 6.449 8 N -0.369 5.369 9 C -0.029 4.029 10 C 0.017 3.983 11 N -0.284 5.284 12 C -0.069 4.069 13 C 0.229 3.771 14 O -0.503 6.503 15 N -0.212 5.212 16 C -0.462 4.462 17 H 0.100 0.900 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.817 3.183 21 H -0.196 1.196 22 H -0.197 1.197 23 H -0.195 1.195 24 C -0.153 4.153 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.150 4.150 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.248 0.752 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.164 0.836 41 H 0.118 0.882 42 H 0.071 0.929 43 H 0.226 0.774 44 H 0.086 0.914 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.660 8.157 -9.841 21.801 hybrid contribution -1.512 0.500 -0.097 1.595 sum 16.149 8.657 -9.939 20.845 Atomic orbital electron populations 1.22337 0.95802 1.02379 1.03005 1.22426 0.93918 0.94478 0.87622 1.21875 1.01754 0.93783 1.03069 1.88033 1.86998 1.18615 1.37513 1.22360 1.02849 0.83614 0.94779 1.20840 0.76959 0.82270 0.90241 1.90711 1.52969 1.61756 1.39499 1.45757 1.67716 1.07832 1.15570 1.22165 1.00016 0.94588 0.86114 1.22020 0.89701 0.88817 0.97789 1.60319 1.00330 1.62617 1.05104 1.21521 0.89461 0.97046 0.98867 1.20755 0.85741 0.85643 0.84961 1.90484 1.86085 1.41900 1.31785 1.41963 1.08322 1.42041 1.28912 1.19644 0.87450 1.25131 1.14014 0.90031 1.26076 1.02385 0.97543 0.95404 1.69686 1.31205 1.36659 1.18796 0.84980 0.76665 0.78422 0.78234 1.19586 1.19686 1.19499 1.22459 0.99580 0.98324 0.94960 1.22390 0.97531 0.97185 0.98259 1.22288 0.97186 0.99082 0.96649 1.22274 0.94641 1.00903 0.97194 0.89321 0.92889 0.93311 0.89572 0.92011 0.88751 0.93146 0.86672 0.88944 0.75220 0.92919 0.90320 0.83559 0.88239 0.92944 0.77359 0.91364 0.89785 0.92212 0.92608 0.90476 0.90868 0.90446 0.90654 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 9.53 71.98 0.69 -2.37 16 2 C 0.07 1.24 3.34 30.59 0.10 1.34 16 3 C -0.15 -2.19 9.56 71.98 0.69 -1.51 16 4 O -0.39 -9.79 9.52 -129.94 -1.24 -11.03 16 5 C 0.04 0.86 6.23 71.23 0.44 1.30 16 6 C 0.51 13.40 7.91 87.66 0.69 14.09 16 7 O -0.57 -20.84 16.50 15.99 0.26 -20.58 16 8 N -0.71 -14.95 5.06 -463.05 -2.34 -17.29 16 9 C 0.10 2.17 3.56 86.38 0.31 2.48 16 10 C 0.11 2.28 0.55 4.26 0.00 2.28 16 11 N -0.65 -18.54 5.47 -470.56 -2.58 -21.12 16 12 C 0.06 2.19 5.28 85.56 0.45 2.64 16 13 C 0.44 20.89 7.83 87.66 0.69 21.57 16 14 O -0.62 -33.21 15.89 -3.08 -0.05 -33.26 16 15 N -0.58 -29.96 5.29 -306.98 -1.62 -31.58 16 16 C -0.33 -19.00 9.68 84.04 0.81 -18.18 16 17 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 19 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 20 Si 0.99 43.19 29.55 68.60 2.03 45.22 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 C -0.11 -2.40 5.83 31.67 0.18 -2.22 16 25 C -0.12 -2.14 6.91 31.89 0.22 -1.92 16 26 C -0.11 -1.71 6.83 31.67 0.22 -1.49 16 27 C -0.11 -1.83 5.74 31.32 0.18 -1.66 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.05 0.96 7.87 -2.39 -0.02 0.94 16 30 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.09 1.02 7.79 -2.38 -0.02 1.00 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 35 H 0.12 1.38 8.08 -2.39 -0.02 1.36 16 36 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 37 H 0.41 6.63 7.17 -92.71 -0.66 5.97 16 38 H 0.05 1.45 6.73 -2.39 -0.02 1.43 16 39 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 40 H 0.34 9.61 7.34 -89.70 -0.66 8.96 16 41 H 0.10 3.25 6.24 -2.39 -0.01 3.24 16 42 H 0.05 1.77 6.66 -2.38 -0.02 1.75 16 43 H 0.39 19.93 7.90 -92.71 -0.73 19.20 16 44 H 0.28 14.36 8.31 -92.70 -0.77 13.59 16 45 H 0.08 1.50 7.85 -2.39 -0.02 1.48 16 46 H 0.06 1.49 6.18 -2.38 -0.01 1.48 16 47 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 48 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 49 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 51 H 0.07 1.32 7.85 -2.39 -0.02 1.30 16 52 H 0.08 1.10 7.54 -2.39 -0.02 1.09 16 Total: -1.00 -76.16 415.89 -0.22 -76.38 By element: Atomic # 1 Polarization: 48.91 SS G_CDS: -1.11 Total: 47.80 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 6.14 Total: 16.05 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -6.26 Total: -120.58 kcal Atomic # 8 Polarization: -63.85 SS G_CDS: -1.02 Total: -64.87 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -76.16 -0.22 -76.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319339969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.709 kcal (2) G-P(sol) polarization free energy of solvation -76.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds