Wall clock time and date at job start Wed Apr 1 2020 01:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.57423 * 2 1 4 4 C 1.53093 * 109.52199 * 239.84700 * 2 1 3 5 5 O 1.42896 * 109.41422 * 182.48591 * 4 2 1 6 6 C 1.42907 * 114.10102 * 61.15279 * 5 4 2 7 7 C 1.53092 * 109.41498 * 298.84580 * 6 5 4 8 8 C 1.53171 * 109.52094 * 120.15771 * 2 1 3 9 9 H 1.08997 * 109.54495 * 56.93429 * 8 2 1 10 10 C 1.50694 * 109.54410 * 296.75358 * 8 2 1 11 11 O 1.21282 * 120.00144 * 347.85167 * 10 8 2 12 12 N 1.34786 * 119.99862 * 167.85228 * 10 8 2 13 13 C 1.46498 * 119.99790 * 353.30556 * 12 10 8 14 14 C 1.46498 * 119.99742 * 173.30587 * 12 10 8 15 15 C 1.52995 * 109.47152 * 90.00143 * 14 12 10 16 16 N 1.46898 * 109.47355 * 179.97438 * 15 14 12 17 17 C 1.46893 * 111.00060 * 293.95401 * 16 15 14 18 18 C 1.46909 * 111.00283 * 169.99751 * 16 15 14 19 19 C 1.50698 * 109.47033 * 189.99798 * 18 16 15 20 20 O 1.21294 * 120.00424 * 0.02562 * 19 18 16 21 21 N 1.34780 * 119.99801 * 180.02562 * 19 18 16 22 22 C 1.37094 * 119.99808 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00270 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99654 * 179.97438 * 22 21 19 25 25 N 1.31416 * 120.00286 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99977 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46833 * 60.00111 * 26 24 22 28 28 H 1.48499 * 109.47150 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47122 * 300.00228 * 26 24 22 30 30 H 1.08996 * 109.47352 * 299.84073 * 1 2 3 31 31 H 1.09005 * 109.46964 * 59.84109 * 1 2 3 32 32 H 1.09004 * 109.47088 * 179.83698 * 1 2 3 33 33 H 1.09007 * 109.47775 * 302.46601 * 4 2 1 34 34 H 1.08995 * 109.48314 * 62.49932 * 4 2 1 35 35 H 1.09002 * 109.47531 * 58.82773 * 6 5 4 36 36 H 1.08995 * 109.48455 * 178.84313 * 6 5 4 37 37 H 1.08997 * 109.52229 * 297.70199 * 7 6 5 38 38 H 1.09004 * 109.52011 * 177.50736 * 7 6 5 39 39 H 1.08993 * 109.46895 * 269.93209 * 13 12 10 40 40 H 1.08999 * 109.47399 * 29.93879 * 13 12 10 41 41 H 1.09003 * 109.46454 * 149.93860 * 13 12 10 42 42 H 1.09000 * 109.47491 * 330.00078 * 14 12 10 43 43 H 1.08998 * 109.47092 * 209.99643 * 14 12 10 44 44 H 1.09004 * 109.47682 * 59.99546 * 15 14 12 45 45 H 1.09004 * 109.47387 * 299.99745 * 15 14 12 46 46 H 1.08994 * 109.47399 * 59.99804 * 17 16 15 47 47 H 1.09008 * 109.47781 * 180.02562 * 17 16 15 48 48 H 1.09007 * 109.47319 * 300.00019 * 17 16 15 49 49 H 1.09001 * 109.46871 * 310.00438 * 18 16 15 50 50 H 1.09003 * 109.46361 * 70.00284 * 18 16 15 51 51 H 0.97003 * 119.99921 * 359.97438 * 21 19 18 52 52 H 0.96993 * 119.99890 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 3.4694 -0.7742 -1.2164 6 6 4.0044 -1.4815 -0.0958 7 6 3.5716 -0.7871 1.1982 8 6 2.0419 -0.7253 1.2483 9 1 1.6355 -1.7363 1.2749 10 6 1.6078 0.0252 2.4809 11 8 1.1501 1.1438 2.3801 12 7 1.7283 -0.5468 3.6954 13 6 2.1419 -1.9477 3.8075 14 6 1.4455 0.2325 4.9033 15 6 -0.0340 0.0913 5.2665 16 7 -0.3174 0.8722 6.4780 17 6 0.3830 0.3120 7.6413 18 6 -1.7634 0.9560 6.7242 19 6 -2.0293 1.9567 7.8191 20 8 -1.1055 2.5429 8.3426 21 7 -3.2939 2.2004 8.2167 22 6 -3.5359 3.1111 9.2124 23 1 -2.7133 3.6330 9.6785 24 6 -4.8397 3.3627 9.6219 25 7 -5.8407 2.7280 9.0544 26 14 -5.1695 4.6031 10.9791 27 1 -4.6596 5.9355 10.5666 28 1 -6.6311 4.6882 11.2275 29 1 -4.4800 4.1723 12.2217 30 1 -0.3634 0.5113 0.8914 31 1 -0.3633 0.5163 -0.8886 32 1 -0.3633 -1.0277 -0.0029 33 1 1.6431 -1.7392 -1.2678 34 1 1.7159 -0.1884 -2.1389 35 1 3.6316 -2.5058 -0.1008 36 1 5.0926 -1.4905 -0.1573 37 1 3.9779 0.2240 1.2224 38 1 3.9416 -1.3501 2.0550 39 1 1.2606 -2.5888 3.7958 40 1 2.7889 -2.2038 2.9685 41 1 2.6842 -2.0926 4.7419 42 1 1.6763 1.2821 4.7209 43 1 2.0583 -0.1367 5.7256 44 1 -0.2649 -0.9582 5.4489 45 1 -0.6469 0.4605 4.4442 46 1 1.4576 0.3261 7.4599 47 1 0.1554 0.9087 8.5247 48 1 0.0553 -0.7150 7.8029 49 1 -2.2694 1.2722 5.8120 50 1 -2.1375 -0.0220 7.0270 51 1 -4.0328 1.7319 7.7977 52 1 -6.7508 2.9034 9.3405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320042567.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:55 Heat of formation + Delta-G solvation = -134.827443 kcal Electronic energy + Delta-G solvation = -30554.465714 eV Core-core repulsion = 26360.230988 eV Total energy + Delta-G solvation = -4194.234726 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.72365 -40.42966 -39.69060 -38.15318 -36.56282 -35.84948 -35.36169 -33.32965 -33.24820 -31.10626 -29.22582 -28.16162 -27.57764 -27.18045 -26.55872 -25.12553 -23.31158 -22.61257 -21.35360 -21.02127 -20.07382 -19.85682 -18.28239 -17.91735 -17.53768 -17.11787 -16.74390 -16.68054 -16.54556 -16.38330 -15.95069 -15.74201 -15.53803 -15.38983 -15.02778 -14.96503 -14.86416 -14.27400 -14.11957 -13.90070 -13.74930 -13.46202 -13.40892 -13.28574 -13.10035 -13.03915 -12.99514 -12.62815 -12.59969 -12.52450 -12.44699 -12.43506 -12.13354 -11.95865 -11.86777 -11.59694 -11.46888 -11.41222 -10.90721 -10.35477 -10.32402 -10.01975 -9.71920 -9.23251 -8.47361 -5.96315 1.38734 1.40383 1.51570 1.56804 1.88530 2.03001 2.28438 2.82884 2.97890 3.18875 3.39311 3.42950 3.58994 3.71393 3.89174 3.90744 4.03860 4.16170 4.19420 4.25374 4.28246 4.33946 4.41189 4.44840 4.46658 4.48212 4.58005 4.59225 4.63142 4.63739 4.65606 4.72964 4.80530 4.81539 4.90118 4.92189 4.95733 5.10109 5.15777 5.19767 5.30546 5.33197 5.39631 5.49445 5.83495 6.04184 6.16998 6.27790 6.37867 6.59197 7.11412 7.16485 7.54319 8.10197 8.69909 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.001886 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.170968 B =14840.910672 C =15511.410539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 H 0.056 0.944 4 C 0.070 3.930 5 O -0.405 6.405 6 C 0.060 3.940 7 C -0.145 4.145 8 C -0.098 4.098 9 H 0.123 0.877 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.613 5.613 13 C 0.062 3.938 14 C 0.127 3.873 15 C 0.054 3.946 16 N -0.541 5.541 17 C 0.026 3.974 18 C 0.061 3.939 19 C 0.441 3.559 20 O -0.613 6.613 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.995 3.005 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.270 1.270 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.110 0.890 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.097 0.903 50 H 0.071 0.929 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.362 -18.847 -19.184 32.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.127 4.127 3 H 0.074 0.926 4 C -0.006 4.006 5 O -0.324 6.324 6 C -0.016 4.016 7 C -0.182 4.182 8 C -0.119 4.119 9 H 0.141 0.859 10 C 0.300 3.700 11 O -0.455 6.455 12 N -0.346 5.346 13 C -0.079 4.079 14 C 0.003 3.997 15 C -0.074 4.074 16 N -0.266 5.266 17 C -0.121 4.121 18 C -0.071 4.071 19 C 0.229 3.771 20 O -0.499 6.499 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.818 3.182 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.195 1.195 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.125 0.875 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.115 0.885 50 H 0.089 0.911 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.829 -17.326 -19.061 31.327 hybrid contribution -1.488 0.077 1.051 1.824 sum 16.340 -17.250 -18.010 29.815 Atomic orbital electron populations 1.21768 0.94091 1.02458 1.02071 1.21564 0.96785 0.99743 0.94572 0.92574 1.22724 0.80311 1.00604 0.97003 1.87932 1.21100 1.77040 1.46352 1.22776 1.00208 0.95107 0.83509 1.22280 0.92274 1.02585 1.01102 1.21480 0.98148 1.01058 0.91195 0.85903 1.21209 0.77011 0.86310 0.85442 1.90720 1.45930 1.22144 1.86717 1.47947 1.67578 1.14044 1.05037 1.22298 1.01436 0.78907 1.05244 1.21290 0.94843 0.96599 0.86930 1.22358 0.97797 0.95835 0.91437 1.61384 1.07362 1.53353 1.04458 1.22484 0.99345 0.97043 0.93270 1.21691 0.90093 0.97537 0.97752 1.20700 0.82792 0.86885 0.86750 1.90456 1.44197 1.54852 1.60363 1.41932 1.06769 1.38227 1.34234 1.19631 0.93460 1.18987 1.14178 0.90252 1.26074 0.94396 1.00033 1.00934 1.69671 0.99965 1.43113 1.43448 0.84969 0.77481 0.77940 0.77815 1.19882 1.19420 1.19495 0.94091 0.91810 0.90999 0.90761 0.88198 0.90425 0.87198 0.92717 0.87511 0.91365 0.88348 0.89233 0.92387 0.88160 0.92935 0.92462 0.89742 0.92611 0.94621 0.88455 0.91131 0.77096 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.94 71.98 0.64 -1.93 16 2 C -0.11 -1.82 2.04 -10.70 -0.02 -1.84 16 3 H 0.06 1.33 7.87 -2.39 -0.02 1.31 16 4 C 0.07 0.87 6.13 72.01 0.44 1.31 16 5 O -0.41 -6.14 10.77 -148.98 -1.60 -7.74 16 6 C 0.06 0.51 6.84 72.01 0.49 1.01 16 7 C -0.14 -1.54 5.12 30.69 0.16 -1.38 16 8 C -0.10 -1.37 1.25 -11.42 -0.01 -1.38 16 9 H 0.12 1.01 7.38 -2.39 -0.02 1.00 16 10 C 0.51 11.27 6.39 87.65 0.56 11.83 16 11 O -0.58 -18.90 14.08 -3.04 -0.04 -18.95 16 12 N -0.61 -10.89 2.87 -846.78 -2.43 -13.32 16 13 C 0.06 0.47 9.99 127.77 1.28 1.74 16 14 C 0.13 2.93 5.33 86.38 0.46 3.39 16 15 C 0.05 1.45 5.28 86.30 0.46 1.90 16 16 N -0.54 -18.54 4.50 -927.03 -4.17 -22.72 16 17 C 0.03 0.82 8.96 127.69 1.14 1.96 16 18 C 0.06 2.26 5.45 85.55 0.47 2.73 16 19 C 0.44 21.95 7.47 87.66 0.66 22.61 16 20 O -0.61 -34.84 13.91 -3.07 -0.04 -34.88 16 21 N -0.57 -30.54 5.29 -306.98 -1.62 -32.16 16 22 C -0.33 -19.38 9.68 84.04 0.81 -18.57 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 25 N -0.92 -50.74 13.05 21.66 0.28 -50.45 16 26 Si 0.99 43.81 29.55 68.60 2.03 45.84 16 27 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 29 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 30 H 0.04 1.01 6.26 -2.39 -0.01 0.99 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.59 6.04 -2.38 -0.01 0.58 16 39 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.10 0.29 4.48 -2.39 -0.01 0.28 16 41 H 0.09 0.45 7.89 -2.39 -0.02 0.44 16 42 H 0.06 1.77 7.52 -2.39 -0.02 1.75 16 43 H 0.10 1.84 6.30 -2.39 -0.02 1.83 16 44 H 0.05 1.16 8.12 -2.38 -0.02 1.14 16 45 H 0.06 1.74 7.93 -2.39 -0.02 1.72 16 46 H 0.08 2.16 6.47 -2.39 -0.02 2.14 16 47 H 0.06 2.23 5.83 -2.38 -0.01 2.22 16 48 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.10 3.44 7.93 -2.39 -0.02 3.42 16 50 H 0.07 2.30 8.12 -2.39 -0.02 2.28 16 51 H 0.40 20.02 7.90 -92.71 -0.73 19.28 16 52 H 0.28 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -79.05 404.51 0.58 -78.47 By element: Atomic # 1 Polarization: 32.67 SS G_CDS: 0.19 Total: 32.86 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 8.00 Total: 23.05 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.94 Total: -118.65 kcal Atomic # 8 Polarization: -59.88 SS G_CDS: -1.69 Total: -61.56 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.05 0.58 -78.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320042567.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.358 kcal (2) G-P(sol) polarization free energy of solvation -79.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds