Wall clock time and date at job start Wed Apr 1 2020 01:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52391 * 2 1 4 4 C 1.53093 * 109.57608 * 239.84434 * 2 1 3 5 5 O 1.42910 * 109.41170 * 297.67292 * 4 2 1 6 6 C 1.42899 * 114.09723 * 298.84034 * 5 4 2 7 7 C 1.53105 * 109.48707 * 61.10982 * 6 5 4 8 8 C 1.53176 * 109.15987 * 302.52471 * 7 6 5 9 9 H 1.08995 * 109.54342 * 296.93808 * 8 7 6 10 10 C 1.50700 * 109.54281 * 176.75649 * 8 7 6 11 11 O 1.21275 * 119.99892 * 246.05178 * 10 8 7 12 12 N 1.34779 * 120.00030 * 66.05755 * 10 8 7 13 13 C 1.46504 * 119.99452 * 359.97438 * 12 10 8 14 14 C 1.46496 * 120.00018 * 180.02562 * 12 10 8 15 15 C 1.52995 * 109.47363 * 89.99653 * 14 12 10 16 16 N 1.46896 * 109.47046 * 179.97438 * 15 14 12 17 17 C 1.46900 * 111.00267 * 293.95549 * 16 15 14 18 18 C 1.46903 * 110.99977 * 169.99992 * 16 15 14 19 19 C 1.50694 * 109.47245 * 190.00278 * 18 16 15 20 20 O 1.21291 * 120.00226 * 359.97438 * 19 18 16 21 21 N 1.34779 * 120.00408 * 180.02562 * 19 18 16 22 22 C 1.37088 * 120.00391 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00304 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99977 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00128 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99997 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47434 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47577 * 120.00451 * 26 24 22 29 29 H 1.48503 * 109.47233 * 240.00146 * 26 24 22 30 30 H 1.09003 * 109.46859 * 308.74031 * 1 2 3 31 31 H 1.09004 * 109.47290 * 68.73334 * 1 2 3 32 32 H 1.09000 * 109.47512 * 188.73670 * 1 2 3 33 33 H 1.08996 * 109.48070 * 57.65356 * 4 2 1 34 34 H 1.08996 * 109.48301 * 177.69060 * 4 2 1 35 35 H 1.08996 * 109.48179 * 181.13960 * 6 5 4 36 36 H 1.09006 * 109.47843 * 301.17671 * 6 5 4 37 37 H 1.09007 * 109.59381 * 182.57592 * 7 6 5 38 38 H 1.08998 * 109.45044 * 62.39156 * 7 6 5 39 39 H 1.08999 * 109.47130 * 269.99748 * 13 12 10 40 40 H 1.08999 * 109.47607 * 30.00364 * 13 12 10 41 41 H 1.09005 * 109.46529 * 150.00655 * 13 12 10 42 42 H 1.08998 * 109.46748 * 329.99527 * 14 12 10 43 43 H 1.09006 * 109.46642 * 210.00284 * 14 12 10 44 44 H 1.08994 * 109.47102 * 299.99864 * 15 14 12 45 45 H 1.09000 * 109.46832 * 59.99949 * 15 14 12 46 46 H 1.08996 * 109.47155 * 60.00093 * 17 16 15 47 47 H 1.09005 * 109.46750 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.46767 * 299.99713 * 17 16 15 49 49 H 1.08999 * 109.46908 * 310.00390 * 18 16 15 50 50 H 1.09004 * 109.47023 * 70.00114 * 18 16 15 51 51 H 0.97001 * 119.99518 * 359.97438 * 21 19 18 52 52 H 0.96997 * 119.99989 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0429 -0.7246 -1.2472 5 8 1.6122 -2.0869 -1.2159 6 6 2.0995 -2.8272 -0.0949 7 6 1.5908 -2.1876 1.1998 8 6 2.0419 -0.7246 1.2487 9 1 3.1306 -0.6794 1.2759 10 6 1.4789 -0.0645 2.4809 11 8 0.6610 0.8244 2.3727 12 7 1.8845 -0.4618 3.7033 13 6 2.8723 -1.5358 3.8339 14 6 1.3369 0.1795 4.9012 15 6 0.0834 -0.5717 5.3540 16 7 -0.4654 0.0711 6.5555 17 6 0.4543 -0.0662 7.6927 18 6 -1.7916 -0.4696 6.8827 19 6 -2.4254 0.3721 7.9600 20 8 -1.8308 1.3281 8.4113 21 7 -3.6527 0.0621 8.4229 22 6 -4.2291 0.8276 9.4033 23 1 -3.6996 1.6788 9.8051 24 6 -5.4946 0.5082 9.8801 25 7 -6.1387 -0.5278 9.3915 26 14 -6.2803 1.5516 11.2155 27 1 -5.3559 2.6509 11.5930 28 1 -7.5531 2.1260 10.7104 29 1 -6.5563 0.7071 12.4054 30 1 -0.3633 0.6431 0.8016 31 1 -0.3634 0.3728 -0.9577 32 1 -0.3634 -1.0157 0.1561 33 1 1.6467 -0.2386 -2.1387 34 1 3.1321 -0.6881 -1.2667 35 1 1.7441 -3.8558 -0.1563 36 1 3.1895 -2.8181 -0.0994 37 1 1.9985 -2.7234 2.0570 38 1 0.5021 -2.2342 1.2242 39 1 2.3596 -2.4959 3.8923 40 1 3.5333 -1.5290 2.9673 41 1 3.4589 -1.3816 4.7397 42 1 1.0783 1.2137 4.6736 43 1 2.0811 0.1579 5.6973 44 1 -0.6607 -0.5500 4.5579 45 1 0.3419 -1.6059 5.5816 46 1 1.4066 0.4044 7.4487 47 1 0.0232 0.4180 8.5691 48 1 0.6150 -1.1234 7.9044 49 1 -2.4201 -0.4539 5.9923 50 1 -1.6885 -1.4955 7.2366 51 1 -4.1281 -0.7026 8.0623 52 1 -7.0219 -0.7510 9.7246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320042571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:00 Heat of formation + Delta-G solvation = -101.592288 kcal Electronic energy + Delta-G solvation = -30774.181299 eV Core-core repulsion = 26581.387757 eV Total energy + Delta-G solvation = -4192.793542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09023 -39.14503 -38.52871 -36.82543 -35.57820 -34.53557 -33.81837 -32.28112 -31.22539 -30.04612 -27.78472 -27.65203 -26.83106 -26.16467 -25.07225 -23.80056 -23.50409 -21.31786 -20.12845 -19.15961 -18.98266 -17.82035 -17.46047 -16.98630 -16.41289 -16.34226 -15.89489 -15.68107 -15.27153 -15.15994 -14.66857 -14.58857 -14.46432 -14.09580 -13.89695 -13.70307 -13.54722 -13.39808 -13.26368 -13.00308 -12.83707 -12.61221 -12.22252 -12.09096 -12.02307 -11.88157 -11.61436 -11.49895 -11.31112 -11.28458 -11.23262 -10.92793 -10.90470 -10.78376 -10.66136 -10.32227 -10.20389 -10.19715 -9.46330 -9.43982 -8.96280 -8.40032 -7.95359 -7.83651 -6.39242 -3.79820 2.38978 2.68834 3.18104 3.28508 3.35881 3.49349 3.93329 4.02872 4.10984 4.20736 4.30473 4.34132 4.53502 4.58400 4.74137 4.80646 4.90763 4.95728 4.98590 5.08093 5.12424 5.15100 5.19197 5.23492 5.27969 5.29931 5.36424 5.45325 5.45969 5.53537 5.65524 5.68099 5.71539 5.82410 5.88221 5.90735 5.98549 6.04137 6.08510 6.24314 6.31577 6.46071 6.54024 6.80732 7.12695 7.26694 7.40845 7.57945 8.00754 8.09323 8.64700 9.20897 9.57366 10.09292 10.78694 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.001974 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.162506 B =14179.750488 C =14736.110048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 H 0.083 0.917 4 C 0.065 3.935 5 O -0.378 6.378 6 C 0.064 3.936 7 C -0.156 4.156 8 C -0.103 4.103 9 H 0.094 0.906 10 C 0.517 3.483 11 O -0.519 6.519 12 N -0.616 5.616 13 C 0.075 3.925 14 C 0.119 3.881 15 C 0.045 3.955 16 N -0.516 5.516 17 C 0.020 3.980 18 C 0.048 3.952 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.297 4.297 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.097 0.903 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.097 0.903 48 H 0.013 0.987 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.796 -7.979 -18.894 29.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.125 4.125 3 H 0.102 0.898 4 C -0.012 4.012 5 O -0.297 6.297 6 C -0.013 4.013 7 C -0.194 4.194 8 C -0.125 4.125 9 H 0.112 0.888 10 C 0.305 3.695 11 O -0.395 6.395 12 N -0.350 5.350 13 C -0.068 4.068 14 C -0.004 4.004 15 C -0.085 4.085 16 N -0.240 5.240 17 C -0.128 4.128 18 C -0.083 4.083 19 C 0.231 3.769 20 O -0.461 6.461 21 N -0.202 5.202 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 20.398 -6.496 -18.822 28.506 hybrid contribution -0.420 -0.973 0.922 1.405 sum 19.979 -7.469 -17.900 27.845 Atomic orbital electron populations 1.22108 0.93333 1.02923 1.03017 1.21564 0.98547 0.99542 0.92853 0.89820 1.22694 0.98075 0.82275 0.98113 1.87956 1.74187 1.22491 1.45040 1.22551 0.97887 0.95752 0.85108 1.22381 1.03510 0.93893 0.99566 1.21382 1.01185 0.96322 0.93562 0.88828 1.20554 0.81761 0.82985 0.84196 1.90652 1.32564 1.30503 1.85768 1.47874 1.43126 1.37774 1.06207 1.21935 0.91696 0.90153 1.03001 1.21501 0.94982 0.98458 0.85445 1.22418 0.97131 0.95193 0.93749 1.61452 1.02050 1.56609 1.03870 1.22596 0.96132 0.98460 0.95584 1.21850 0.90794 0.96253 0.99441 1.19717 0.83360 0.87751 0.86107 1.90480 1.63212 1.30709 1.61693 1.41873 1.14648 1.28452 1.35220 1.19747 0.99270 1.10174 1.13449 0.87851 1.25266 0.96619 0.97082 0.99097 1.69623 1.14445 1.26923 1.43403 0.85800 0.78950 0.79583 0.80007 1.19221 1.20750 1.20826 0.89007 0.93273 0.92811 0.88492 0.93295 0.88520 0.93117 0.89861 0.89898 0.92348 0.90986 0.90849 0.88672 0.90410 0.90669 0.95351 0.92193 0.88468 0.96840 0.89427 0.93547 0.77513 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.35 37.15 0.31 -1.36 16 2 C -0.11 -0.91 2.50 -90.48 -0.23 -1.13 16 3 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 4 C 0.07 0.46 6.25 37.21 0.23 0.70 16 5 O -0.38 -3.24 10.36 -35.23 -0.36 -3.61 16 6 C 0.06 0.39 6.84 37.21 0.25 0.64 16 7 C -0.16 -1.03 4.80 -26.59 -0.13 -1.16 16 8 C -0.10 -0.80 1.57 -91.59 -0.14 -0.94 16 9 H 0.09 0.54 7.09 -51.93 -0.37 0.17 16 10 C 0.52 5.68 6.79 -10.98 -0.07 5.60 16 11 O -0.52 -7.78 12.90 5.56 0.07 -7.70 16 12 N -0.62 -5.90 2.87 -181.57 -0.52 -6.42 16 13 C 0.08 0.42 8.99 59.85 0.54 0.96 16 14 C 0.12 1.41 5.37 -4.05 -0.02 1.39 16 15 C 0.04 0.61 5.28 -3.83 -0.02 0.59 16 16 N -0.52 -8.88 4.50 -244.38 -1.10 -9.98 16 17 C 0.02 0.32 8.96 60.06 0.54 0.86 16 18 C 0.05 0.90 5.45 -4.98 -0.03 0.87 16 19 C 0.45 10.75 7.47 -10.99 -0.08 10.67 16 20 O -0.58 -15.75 13.91 5.55 0.08 -15.67 16 21 N -0.57 -14.60 5.29 -10.97 -0.06 -14.66 16 22 C -0.30 -8.38 9.68 -14.94 -0.14 -8.53 16 23 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.89 13.05 55.50 0.72 -24.16 16 26 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.09 1.22 5.39 -51.93 -0.28 0.94 16 31 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 32 H 0.05 0.59 6.01 -51.93 -0.31 0.27 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 37 H 0.08 0.41 5.32 -51.92 -0.28 0.13 16 38 H 0.08 0.71 6.45 -51.93 -0.34 0.38 16 39 H 0.06 0.29 7.10 -51.93 -0.37 -0.08 16 40 H 0.07 0.27 6.07 -51.93 -0.31 -0.04 16 41 H 0.07 0.35 7.89 -51.93 -0.41 -0.06 16 42 H 0.09 1.39 7.42 -51.93 -0.39 1.00 16 43 H 0.08 0.80 6.30 -51.93 -0.33 0.48 16 44 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.06 0.81 6.47 -51.93 -0.34 0.48 16 47 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 48 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.09 1.54 7.93 -51.93 -0.41 1.13 16 50 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 51 H 0.39 9.70 7.90 -40.82 -0.32 9.38 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 397.36 15.07 5.99 5.99 Total: -1.00 -33.97 397.36 -7.77 -41.74 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.48 Total: 8.57 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 0.91 Total: 9.62 kcal Atomic # 7 Polarization: -54.27 SS G_CDS: -0.96 Total: -55.23 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.22 Total: -26.99 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.97 -7.77 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320042571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.852 kcal (2) G-P(sol) polarization free energy of solvation -33.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds