Wall clock time and date at job start Wed Apr 1 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09007 * 109.52391 * 2 1 4 4 C 1.53093 * 109.57608 * 239.84434 * 2 1 3 5 5 O 1.42910 * 109.41170 * 297.67292 * 4 2 1 6 6 C 1.42899 * 114.09723 * 298.84034 * 5 4 2 7 7 C 1.53105 * 109.48707 * 61.10982 * 6 5 4 8 8 C 1.53176 * 109.15987 * 302.52471 * 7 6 5 9 9 H 1.08995 * 109.54342 * 296.93808 * 8 7 6 10 10 C 1.50700 * 109.54281 * 176.75649 * 8 7 6 11 11 O 1.21275 * 119.99892 * 246.05178 * 10 8 7 12 12 N 1.34779 * 120.00030 * 66.05755 * 10 8 7 13 13 C 1.46504 * 119.99452 * 359.97438 * 12 10 8 14 14 C 1.46496 * 120.00018 * 180.02562 * 12 10 8 15 15 C 1.52995 * 109.47363 * 89.99653 * 14 12 10 16 16 N 1.46896 * 109.47046 * 179.97438 * 15 14 12 17 17 C 1.46900 * 111.00267 * 293.95549 * 16 15 14 18 18 C 1.46903 * 110.99977 * 169.99992 * 16 15 14 19 19 C 1.50694 * 109.47245 * 190.00278 * 18 16 15 20 20 O 1.21291 * 120.00226 * 359.97438 * 19 18 16 21 21 N 1.34779 * 120.00408 * 180.02562 * 19 18 16 22 22 C 1.37088 * 120.00391 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00304 * 359.97438 * 22 21 19 24 24 C 1.38952 * 119.99977 * 179.97438 * 22 21 19 25 25 N 1.31414 * 120.00128 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99997 * 180.02562 * 24 22 21 27 27 H 1.48502 * 109.47434 * 359.97438 * 26 24 22 28 28 H 1.48495 * 109.47577 * 120.00451 * 26 24 22 29 29 H 1.48503 * 109.47233 * 240.00146 * 26 24 22 30 30 H 1.09003 * 109.46859 * 308.74031 * 1 2 3 31 31 H 1.09004 * 109.47290 * 68.73334 * 1 2 3 32 32 H 1.09000 * 109.47512 * 188.73670 * 1 2 3 33 33 H 1.08996 * 109.48070 * 57.65356 * 4 2 1 34 34 H 1.08996 * 109.48301 * 177.69060 * 4 2 1 35 35 H 1.08996 * 109.48179 * 181.13960 * 6 5 4 36 36 H 1.09006 * 109.47843 * 301.17671 * 6 5 4 37 37 H 1.09007 * 109.59381 * 182.57592 * 7 6 5 38 38 H 1.08998 * 109.45044 * 62.39156 * 7 6 5 39 39 H 1.08999 * 109.47130 * 269.99748 * 13 12 10 40 40 H 1.08999 * 109.47607 * 30.00364 * 13 12 10 41 41 H 1.09005 * 109.46529 * 150.00655 * 13 12 10 42 42 H 1.08998 * 109.46748 * 329.99527 * 14 12 10 43 43 H 1.09006 * 109.46642 * 210.00284 * 14 12 10 44 44 H 1.08994 * 109.47102 * 299.99864 * 15 14 12 45 45 H 1.09000 * 109.46832 * 59.99949 * 15 14 12 46 46 H 1.08996 * 109.47155 * 60.00093 * 17 16 15 47 47 H 1.09005 * 109.46750 * 180.02562 * 17 16 15 48 48 H 1.09002 * 109.46767 * 299.99713 * 17 16 15 49 49 H 1.08999 * 109.46908 * 310.00390 * 18 16 15 50 50 H 1.09004 * 109.47023 * 70.00114 * 18 16 15 51 51 H 0.97001 * 119.99518 * 359.97438 * 21 19 18 52 52 H 0.96997 * 119.99989 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0429 -0.7246 -1.2472 5 8 1.6122 -2.0869 -1.2159 6 6 2.0995 -2.8272 -0.0949 7 6 1.5908 -2.1876 1.1998 8 6 2.0419 -0.7246 1.2487 9 1 3.1306 -0.6794 1.2759 10 6 1.4789 -0.0645 2.4809 11 8 0.6610 0.8244 2.3727 12 7 1.8845 -0.4618 3.7033 13 6 2.8723 -1.5358 3.8339 14 6 1.3369 0.1795 4.9012 15 6 0.0834 -0.5717 5.3540 16 7 -0.4654 0.0711 6.5555 17 6 0.4543 -0.0662 7.6927 18 6 -1.7916 -0.4696 6.8827 19 6 -2.4254 0.3721 7.9600 20 8 -1.8308 1.3281 8.4113 21 7 -3.6527 0.0621 8.4229 22 6 -4.2291 0.8276 9.4033 23 1 -3.6996 1.6788 9.8051 24 6 -5.4946 0.5082 9.8801 25 7 -6.1387 -0.5278 9.3915 26 14 -6.2803 1.5516 11.2155 27 1 -5.3559 2.6509 11.5930 28 1 -7.5531 2.1260 10.7104 29 1 -6.5563 0.7071 12.4054 30 1 -0.3633 0.6431 0.8016 31 1 -0.3634 0.3728 -0.9577 32 1 -0.3634 -1.0157 0.1561 33 1 1.6467 -0.2386 -2.1387 34 1 3.1321 -0.6881 -1.2667 35 1 1.7441 -3.8558 -0.1563 36 1 3.1895 -2.8181 -0.0994 37 1 1.9985 -2.7234 2.0570 38 1 0.5021 -2.2342 1.2242 39 1 2.3596 -2.4959 3.8923 40 1 3.5333 -1.5290 2.9673 41 1 3.4589 -1.3816 4.7397 42 1 1.0783 1.2137 4.6736 43 1 2.0811 0.1579 5.6973 44 1 -0.6607 -0.5500 4.5579 45 1 0.3419 -1.6059 5.5816 46 1 1.4066 0.4044 7.4487 47 1 0.0232 0.4180 8.5691 48 1 0.6150 -1.1234 7.9044 49 1 -2.4201 -0.4539 5.9923 50 1 -1.6885 -1.4955 7.2366 51 1 -4.1281 -0.7026 8.0623 52 1 -7.0219 -0.7510 9.7246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320042571.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:59 Heat of formation + Delta-G solvation = -127.203250 kcal Electronic energy + Delta-G solvation = -30775.291874 eV Core-core repulsion = 26581.387757 eV Total energy + Delta-G solvation = -4193.904116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.80806 -40.43630 -39.71448 -38.15497 -36.59134 -35.85283 -35.19863 -33.30553 -32.89985 -31.08841 -29.23077 -28.33273 -27.57274 -27.13684 -26.54256 -25.09562 -24.05748 -22.50661 -21.06233 -20.82777 -19.88373 -19.69322 -18.20527 -17.91229 -17.66227 -17.04565 -16.86162 -16.67444 -16.59432 -16.35183 -15.97547 -15.79459 -15.64188 -15.21303 -15.06134 -15.04235 -14.55635 -14.36523 -14.14997 -13.99908 -13.78966 -13.51739 -13.43961 -13.31187 -13.15665 -13.00719 -12.74354 -12.63239 -12.54333 -12.49351 -12.41029 -12.24547 -12.12196 -11.99776 -11.83309 -11.51099 -11.48042 -11.27940 -10.83209 -10.35176 -10.17117 -10.01816 -9.70009 -9.22940 -8.47799 -5.96542 1.35414 1.40465 1.54897 1.58755 1.91361 2.02835 2.28321 2.82950 3.02217 3.18626 3.39521 3.44408 3.62618 3.76128 3.90909 3.98737 4.03711 4.12477 4.19739 4.24694 4.31970 4.35595 4.42065 4.46910 4.49457 4.55660 4.59251 4.60444 4.64315 4.68030 4.71640 4.77810 4.80403 4.83775 4.93146 4.95283 4.98381 5.12176 5.19864 5.20356 5.30688 5.39985 5.43510 5.59532 5.83661 6.04347 6.17350 6.32645 6.40260 6.59057 7.11602 7.21391 7.54361 8.10180 8.70003 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.001974 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.162506 B =14179.750488 C =14736.110048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 H 0.078 0.922 4 C 0.069 3.931 5 O -0.402 6.402 6 C 0.061 3.939 7 C -0.150 4.150 8 C -0.096 4.096 9 H 0.125 0.875 10 C 0.508 3.492 11 O -0.571 6.571 12 N -0.612 5.612 13 C 0.065 3.935 14 C 0.126 3.874 15 C 0.055 3.945 16 N -0.540 5.540 17 C 0.026 3.974 18 C 0.060 3.940 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.922 5.922 26 Si 0.994 3.006 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.269 1.269 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.097 0.903 50 H 0.071 0.929 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.015 -10.008 -19.434 31.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.008 4.008 5 O -0.321 6.321 6 C -0.015 4.015 7 C -0.188 4.188 8 C -0.117 4.117 9 H 0.143 0.857 10 C 0.298 3.702 11 O -0.450 6.450 12 N -0.345 5.345 13 C -0.076 4.076 14 C 0.002 3.998 15 C -0.074 4.074 16 N -0.265 5.265 17 C -0.121 4.121 18 C -0.071 4.071 19 C 0.229 3.771 20 O -0.498 6.498 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.215 4.215 25 N -0.563 5.563 26 Si 0.818 3.182 27 H -0.198 1.198 28 H -0.197 1.197 29 H -0.194 1.194 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.124 0.876 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.074 0.926 48 H 0.054 0.946 49 H 0.115 0.885 50 H 0.089 0.911 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 22.649 -8.580 -19.376 31.016 hybrid contribution -1.075 -0.349 1.068 1.555 sum 21.574 -8.929 -18.308 29.670 Atomic orbital electron populations 1.22004 0.95507 1.01639 1.01777 1.21562 0.96706 0.99840 0.94495 0.90411 1.22711 0.99360 0.81606 0.97084 1.87933 1.74944 1.23028 1.46148 1.22736 0.99348 0.95728 0.83727 1.22365 1.01997 0.93251 1.01145 1.21409 1.02658 0.96454 0.91155 0.85688 1.21242 0.81093 0.82415 0.85450 1.90649 1.34884 1.32884 1.86552 1.47956 1.43298 1.38287 1.04943 1.22276 0.91276 0.89077 1.04968 1.21282 0.94925 0.96634 0.86952 1.22354 0.97166 0.96404 0.91469 1.61381 1.01784 1.57985 1.05378 1.22484 0.96411 0.99608 0.93633 1.21690 0.91673 0.96073 0.97646 1.20701 0.82561 0.87542 0.86266 1.90457 1.63933 1.32455 1.63004 1.41943 1.15397 1.28567 1.35327 1.19697 1.00340 1.10707 1.15301 0.90275 1.26070 0.96448 0.98113 1.00835 1.69683 1.14857 1.27616 1.44112 0.84851 0.77891 0.77923 0.77542 1.19774 1.19702 1.19419 0.92120 0.93131 0.93466 0.88354 0.90872 0.87590 0.90579 0.87556 0.92532 0.91056 0.88527 0.89466 0.92152 0.88285 0.92529 0.92899 0.89737 0.92634 0.94616 0.88452 0.91128 0.77104 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.35 71.98 0.60 -2.81 16 2 C -0.11 -1.75 2.50 -10.70 -0.03 -1.78 16 3 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 4 C 0.07 0.84 6.25 72.01 0.45 1.29 16 5 O -0.40 -6.06 10.36 -148.98 -1.54 -7.61 16 6 C 0.06 0.54 6.84 72.02 0.49 1.03 16 7 C -0.15 -1.61 4.80 30.69 0.15 -1.46 16 8 C -0.10 -1.29 1.57 -11.42 -0.02 -1.30 16 9 H 0.13 0.91 7.09 -2.39 -0.02 0.90 16 10 C 0.51 10.84 6.79 87.66 0.60 11.43 16 11 O -0.57 -17.96 12.90 -3.02 -0.04 -18.00 16 12 N -0.61 -10.53 2.87 -846.76 -2.43 -12.97 16 13 C 0.07 0.46 8.99 127.77 1.15 1.61 16 14 C 0.13 2.85 5.37 86.38 0.46 3.31 16 15 C 0.05 1.43 5.28 86.30 0.46 1.88 16 16 N -0.54 -18.37 4.50 -927.07 -4.17 -22.54 16 17 C 0.03 0.81 8.96 127.69 1.14 1.96 16 18 C 0.06 2.25 5.45 85.55 0.47 2.71 16 19 C 0.44 21.92 7.47 87.65 0.66 22.58 16 20 O -0.61 -34.77 13.91 -3.06 -0.04 -34.81 16 21 N -0.57 -30.54 5.29 -306.99 -1.62 -32.16 16 22 C -0.33 -19.25 9.68 84.04 0.81 -18.44 16 23 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 24 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 25 N -0.92 -50.79 13.05 21.66 0.28 -50.51 16 26 Si 0.99 43.85 29.55 68.60 2.03 45.88 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 28 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H 0.06 1.77 5.39 -2.39 -0.01 1.76 16 31 H 0.05 1.05 8.13 -2.38 -0.02 1.03 16 32 H 0.05 1.08 6.01 -2.39 -0.01 1.07 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 37 H 0.11 0.63 5.32 -2.38 -0.01 0.61 16 38 H 0.06 0.93 6.45 -2.39 -0.02 0.91 16 39 H 0.07 0.37 7.10 -2.39 -0.02 0.35 16 40 H 0.10 0.23 6.07 -2.39 -0.01 0.22 16 41 H 0.09 0.43 7.89 -2.38 -0.02 0.42 16 42 H 0.06 1.81 7.42 -2.39 -0.02 1.80 16 43 H 0.10 1.80 6.30 -2.38 -0.02 1.78 16 44 H 0.06 1.69 7.93 -2.39 -0.02 1.67 16 45 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 46 H 0.08 2.14 6.47 -2.39 -0.02 2.13 16 47 H 0.05 2.22 5.82 -2.38 -0.01 2.20 16 48 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.10 3.42 7.93 -2.39 -0.02 3.40 16 50 H 0.07 2.29 8.12 -2.38 -0.02 2.27 16 51 H 0.40 20.00 7.90 -92.71 -0.73 19.27 16 52 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -78.21 397.36 0.51 -77.69 By element: Atomic # 1 Polarization: 33.17 SS G_CDS: 0.20 Total: 33.37 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 7.86 Total: 21.66 kcal Atomic # 7 Polarization: -110.24 SS G_CDS: -7.94 Total: -118.18 kcal Atomic # 8 Polarization: -58.80 SS G_CDS: -1.62 Total: -60.42 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -78.21 0.51 -77.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320042571.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.510 kcal (2) G-P(sol) polarization free energy of solvation -78.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds